Oncorhynchus gorbuscha (pink salmon): 124012984
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Entry
124012984 CDS
T07892
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124012984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124012984
03036 Chromosome and associated proteins [BR:
ogo03036
]
124012984
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124012984
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124012984
PBAF complex
124012984
GBAF(ncBAF) complex
124012984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
Omp_AT
DUF919
Motif
Other DBs
NCBI-GeneID:
124012984
NCBI-ProteinID:
XP_046183041
LinkDB
All DBs
Position
LG24:44390316..44417258
Genome browser
AA seq
979 aa
AA seq
DB search
MATTSGGPNIGTPGTSQSPHTTTAQRKKDGNPSARYWESHDSLVQLETVRQWIGKHYKKY
VQADSPSCQALASLTLQMLQFQEEVFGRRAEIRTHTKLPSQCFLDLRPGGGLCHILGTAY
KFKTDQGWRRFDLQNSSRTDRNVEMFTTLEKTLVQNSCLSRPIVYVDQEVDQNLNSRLAD
IITKHQGSLTEDRTQASHHIYPRPAVTDQDWEWVRPVMRKDNYVLVHWGRHPDSYDSWLS
TSDVEGEVQEPPHTHRPWRVHAGWVLDTEVYNEWMNEEDYLVDDRNVPLILRRRVHVTDQ
QDRKFTPLKKRRRSPSPLSSDGKKKGGKKSGGFKRRGPKEEEEDVEEDLTKDMEDPTPVP
NMEEIILPKNVNPKKDSENTPVKGGMMTDLDEIEDDSLLPGGREDEEGREGLRLSDGEDN
ITEQTHHIIVPSYTAWFNYNCIHQIEKRALPEFFNGQNKSKSPEIYLAYRNFMIDSYRLN
PQEYLSSTSCRRNLTGDVCAVMRVHALLEQWGLVNYQVDAESRPLPMGPPPTPHFNTLAD
TPSGLAPLQHRPLQVSSSQQMLFFPERSVEKPSDSQNFGLRTDLYARKHPKSKGASSGRD
WTEQETLLLLEALEVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSASSLGPLA
YQPVPFSQSENPVMSTVAFLASVVDPRVASAAAKAALEEFCRVREEADKVLEFPALNEAE
KADVMDGEKMETDSGSQQSLQADRQTVLEPSGGERLVEGERVKRENAEMTVTEERDCDSG
GNRESDRGEKEEIAGRWREVEQDEGRRLAELELVDGTVTTAAAAALGAAATKAKHLAAVE
ERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLSERQSFHSEQLK
HAEMKILQQREQQAPYTPQQHTGQSMPSQMMPTGGNSLTMAPRHPGAPNGMYPPPQPDGI
APTQPGPPSTAIHSRGAET
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcgacaacgtcagggggacccaacatcgggactcccgggaccagccagagtccacac
accaccacggcacagcggaaaaaagacgggaatccgtccgcgaggtactgggagagccac
gactccctggttcagctcgagacggtgcgacagtggatcggaaagcactacaaaaagtat
gtgcaggcagattctccatcctgccaggctctagcctccctcacccttcagatgcttcag
ttccaggaggaagtgttcggcagacgggctgaaatccgcacacacaccaaactaccttct
cagtgctttctggacctgcgcccaggaggcgggctttgccacatccttggcactgcatac
aagttcaagactgatcagggctggagaaggtttgacctacagaactcctccaggacggac
cgaaacgtagagatgtttactactctggagaagaccctggtccagaatagctgtctgtcg
aggcccatcgtgtatgtggaccaggaggtggatcagaacctgaacagcagactggctgac
atcatcaccaaacaccagggttcgttgactgaggacagaacccaagcctctcaccacatc
tacccccgtccagctgtcacagaccaagattgggagtgggtgcgccctgttatgcggaag
gacaactatgtgttggtgcactggggcaggcaccctgacagctacgatagctggctgtcc
accagtgacgtagagggagaggtgcaggaacctccacacacacacagaccttggagggtg
catgcaggctgggtgttggatacggaggtgtataatgagtggatgaatgaagaagactac
ctggtagatgacagaaacgttcctctcatcctccgccggagagtccacgtcacagaccaa
caggaccgtaagtttactccactgaagaagagaagacgctccccctctcctctctcttcc
gatggcaaaaagaaaggaggaaagaagagtggcgggttcaagaggcgtgggccaaaggag
gaagaggaagacgtagaggaggatctgactaaagatatggaggatccaacacctgtccct
aatatggaagaaattatactgcctaagaatgtgaacccaaagaaggacagtgagaacact
cctgtcaaaggagggatgatgactgacctggatgaaattgaggatgactctctgcttcct
ggtggaagggaggatgaggagggcagagaggggctgcgtctgtcagatggagaagataac
atcacagaacaaactcaccacatcatcgtcccgtcctacaccgcctggttcaactataac
tgtattcaccagatcgagaaacgagctcttccagagttctttaacggacagaacaagtcc
aaatctccagagatatacctggcatatcgtaacttcatgattgactcgtaccggctgaac
ccccaggagtacctcagctccacctcctgcagacggaacctgacaggagacgtctgcgcc
gtcatgagggtccatgcgttgttggagcagtgggggttagtgaactaccaggtggatgca
gaaagcagacctctccctatgggaccccctcccacccctcacttcaacacactggctgat
acaccctcaggactggccccgctgcagcacagaccactacaggtgtcatcctcccagcag
atgttgttcttccctgagagaagtgtagagaagccctcagactctcagaactttggcctc
agaacagacctgtatgccaggaaacaccctaagagtaaaggagccagttcagggagggat
tggacagaacaggagaccctcctactgttggaggcgttagaggtctatagagacgactgg
aacaaggtgtcagaacacgtggggtctcgtacccaggacgagtgcatcctccacttcctg
cgcctgccaatagaagacccgtatctggaggactccgcctcctctcttggcccattggcc
taccagcccgttcctttcagccaatcagagaatccggtgatgagcactgtggcgttcttg
gcgtccgtggttgatccccgagttgcctccgccgccgccaaggctgctttggaggagttt
tgtcgtgtgcgtgaggaagctgacaaggttctggagttccctgcactcaatgaggctgag
aaggcagatgtgatggatggtgagaagatggagactgactctggctcccagcagtctctg
caggcggatagacagactgttctagagcccagtggaggagagagattagtggagggagaa
cgagttaagagagagaatgctgaaatgacagtcacagaggagagagactgcgatagcgga
gggaaccgcgagtcagaccggggggagaaggaggagattgcgggacgatggagggaagta
gagcaggatgaagggaggagactagcagagctggagttggtagatgggaccgttaccacg
gcagcagctgctgctctaggcgccgctgctactaaggccaagcacctagcagcagtagag
gagaggaagatcaagtctctggtggctctgctggtggagactcagatgaagaagctggag
atcaaactgagacactttgaggagctggagaccatcatggaccgagagaaagaggctttg
gagcaacagcgtcagcagctgttgtcagagcgacaaagtttccactctgagcagctgaaa
catgcagagatgaagattctacagcagagagagcagcaagcaccatacactccacaacaa
cacacaggccagtccatgcccagccagatgatgcctactgggggaaactctctcaccatg
gccccccgacaccctggagctccaaacggcatgtacccaccaccacagcctgatgggata
gctccgacccagcctggtcctccaagcacagccatacacagccggggagcagaaacatga
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