Oncorhynchus gorbuscha (pink salmon): 124013021
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Entry
124013021 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: terminal nucleotidyltransferase 4A-like
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124013021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124013021
03016 Transfer RNA biogenesis [BR:
ogo03016
]
124013021
Enzymes [BR:
ogo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
124013021
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124013021
Transfer RNA biogenesis [BR:
ogo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124013021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
TUTase
PAP_NTPase
DUF7752
Motif
Other DBs
NCBI-GeneID:
124013021
NCBI-ProteinID:
XP_046183083
LinkDB
All DBs
Position
LG24:41899117..41928895
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AA seq
589 aa
AA seq
DB search
MHHGCESGRFLSLHEEVVDFYNFMSPQPEEASMRKEVVNRIETVIKELWPTADVQIFGSF
STGLYLPTSDIDLVVFGKWERPPLQQLEQALRKHNVAEPFSIKVLDKATVPIIKLTDQET
DVKVDISFNVETGVKAALFIKDYTKRYPVLPYLIFVLKQFLLQRDLNEVFTGGISSYSLI
LMVISFLQLHPRIDASSPNINLGILLIEFFELYGRHFNYLKTGIRVKNGGAYMAKEDMTK
VMTNGYRPSMLCIEDPLMPGNDVGRSSYGAMQVKQVFDYAYIVLGHAVSPLARSYPNKDM
DSTLGRIIKVTQEVIDYREWIMTKWGGRHLARMESRGSVLEQDPARCLLGVGVEEQRDSV
SPHSADSPMSLSSPHQHSSASSVSSLSGSDNDSDSTPCPGRPPLCCVFQDSDSTPCPGRP
PALPPYTLQSLGMTLPLGLALGKTGINQQHLIMSPGSQACMSLPSGLTMHSLPVRQVGID
MTPPTHHPAHHNPHAPSNPQPLSSPHPTSHTHQNGPKFHVKGFHNPAVVHSPALANRAHT
PSHTRPHTLTHAVPQHLAPSEEGQPASKPEQIKDKTSPVSSPPFIPLSF
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgcatcatggatgcgaatctgggagatttctcagtctccatgaggaggtggtagacttc
tacaacttcatgtctccccaacctgaggaggcttctatgaggaaggaggtggtcaacaga
atcgagacggtcatcaaggagctgtggcctactgctgacgtgcagatatttggcagcttc
agcactggactctacctgcccacaagtgacatagacctggtggtgtttgggaagtgggaa
cgcccccctctgcagcaattggaacaggccctccggaaacacaacgtggcggaacctttc
tccatcaaagtgctggacaaagctacagtgccaatcatcaagctgactgaccaggagaca
gacgtcaaagtggacatcagcttcaatgtggagacgggagtcaaagctgctctcttcatc
aaggactacacaaagaggtatcccgtgctgccttacctgatctttgtgctgaagcaattt
ctgctccagagagatctcaacgaggtgttcactggaggaatcagctcctacagcctcatc
ctgatggtcattagcttcctccagctccacccaagaattgacgccagtagccccaacatc
aaccttggcatcctgctgattgagttctttgagctgtacggccgccattttaattacctg
aagacgggcatccgtgtcaagaacggaggggcctacatggccaaggaggacatgacgaag
gttatgaccaacggctacagaccctccatgctctgtatagaggacccactgatgccaggt
aacgacgttggcaggagttcgtacggagccatgcaagtcaagcaggtgtttgactacgct
tacatcgtccttggtcacgccgtgtcaccactagcacgctcctaccccaacaaggacatg
gacagcactttggggaggataatcaaggtgacccaggaagtgattgactacagggagtgg
atcatgacgaagtggggaggaaggcacctcgcccgcatggagagccgtggttctgtcctg
gagcaggacccagcacggtgtctgttgggtgtaggtgtggaggaacagagggactcagtc
tcccctcacagtgcagactcccccatgtccctgtccagtcctcaccaacactcctcagcc
tcctcggtctcctctctgtccgggtcagacaatgactctgattcgacgccatgccctggc
cgccctcccctctgctgtgtgttccaggactctgattcgacgccatgccctggccgccct
ccggcgctgcccccctacaccctccagtctctgggtatgactctacccctgggcctggca
ctgggcaagactggcatcaaccagcagcacctcatcatgtcccctggctcacaggcgtgt
atgtctttgcccagtggcctgacgatgcactccttacctgtcagacaggtgggtatagac
atgaccccccctacccaccaccctgcccaccataaccctcatgccccctccaacccccag
cctctgtccagcccccaccccaccagccacacacaccagaatggtcctaagtttcacgtg
aaaggcttccacaatccagctgtggtccacagtcccgccctggccaaccgcgcccacaca
ccctctcacacacgcccacacacactcacacacgcagtaccgcaacacctggcgccgtcg
gaagagggacagcctgccagtaagcctgagcagataaaggataaaacatcccccgtttcc
tctcctcccttcatccctctctcattctga
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