Oncorhynchus gorbuscha (pink salmon): 124013070
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Entry
124013070 CDS
T07892
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
124013070 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124013070 (lig3)
Enzymes [BR:
ogo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
124013070 (lig3)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
124013070 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
BRCT_2
Motif
Other DBs
NCBI-GeneID:
124013070
NCBI-ProteinID:
XP_046183175
LinkDB
All DBs
Position
LG02:complement(91907099..91934553)
Genome browser
AA seq
1029 aa
AA seq
DB search
MQRFCISLALKTVDNIHFGKLCRCQPTWKLFVAYPLSANFQILPHCRGILPYPLGCHQCT
QPPWNRSLSLDSNFKVCWRHYCTNQTDMAEQRYCVEYAKRGTAGCKKCKDKIMKGLTRIG
KIVPNPFSESAGEMKEWYHVKCIFEKLERARATTKKIEDITDLEGWEELQDEDKELINKL
VGDLMAKANTSPKKKVQAKLNNSGQLSAPPADPSLNAPRKFSGFTATKAGSSSSPGPSPA
KPNQGSPLSAQLCDPKHKDSLLREFRKLCAMVADKNSYNVKTQIIHDFLKKGSGGDKFKG
DVYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETVRMFFEEG
KSFPPAAKSLLTIQEVDASLTRLAQLTKEDDQQKELEDISKKCTGNDLKCIIRLIKHDLK
MNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLRNQQDATNGSGPRKLLTIEASLMTPV
QPMLAEACKSIQYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KEFIPQAFVGGNSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFEDAKVCLFVFDCIYFN
GVSLMEKPLYERRKFLHDNMVEVPNRILFSEMKHVTRATDLAEMITRVIREGLEGLVLKD
LKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPNSK
KWCTVTKCSGGYDDAMLTRLQKELDVIKISKEPSKIPGWLKIIKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKSATNLMQLKELFRISKERCDFEVT
AGPSKGGEDDKGSSGDSGSNSPPSTSQRPVTPRKTSTGNSNTPKAKAVKTEPPSPVPATK
RKMPSEEPSAKKVKTETVHHSNGQSKNGQSKTKMAPSMLAEPRNDKTSCSPQTLLDIFSG
VKLVLPDSVQDHTKLRRYFVAYDGDLVPEYDATSATHTLTEPEEDSHAQRVTPGWIWECI
RKRRVVPPC
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgcagagattctgtatttcattggcacttaagactgtcgacaatatacattttgggaaa
ctgtgcaggtgtcaacccacctggaaactgtttgtcgcttatcccttatctgcaaacttc
caaattctaccccattgtaggggcatcctcccctatccattgggctgccatcagtgcacc
cagcccccttggaatcgcagtctttcactagattccaatttcaaggtttgctggcgtcac
tattgtactaaccagacagacatggctgaacagagatactgtgtggagtatgccaaacgt
ggcactgcgggatgtaagaagtgtaaggacaaaatcatgaagggcttgacccgcatcggg
aagattgtgcctaacccgttcagtgagtctgccggggagatgaaggagtggtaccatgtg
aagtgtatctttgagaagctggagcgggcccgggccaccactaagaagatcgaggacatc
acagacctggagggctgggaggagctgcaggatgaggacaaggaactcatcaacaaactt
gttggagacttgatggccaaagctaacactagcccaaagaagaaggtgcaagccaagctg
aacaacagtggtcagctatcagctccgcctgctgacccttctctgaatgcaccacggaag
ttctctggcttcacagctactaaggctgggagctcaagcagcccaggcccttccccagcc
aaacccaaccagggcagtcctctttccgcacagctctgtgaccccaaacacaaggatagc
ctgctccgggagttccgcaagctctgtgccatggtggcagacaagaatagctacaatgtc
aagacacagatcattcacgacttcctgaagaaaggctcagggggagataaattcaaggga
gatgtgtacctgacggtgaagctgcttctcccaggggtggtgaagagtgtgtacaacctc
aacgacaaacagattgtcaagctcttcagccgcatcttcaactgcaaccaggaggagatg
gtgcgagatctggagcagggggatgtgtcggagacagtgaggatgttttttgaagaaggc
aagtctttcccaccggccgccaagagtctgctcacgattcaggaagtggatgcgtccctt
acccgtctggcccagttaaccaaggaggatgaccagcagaaagagctagaggacatatcc
aaaaaatgtaccggcaatgacctgaaatgtatcatcagactcattaagcatgatctaaag
atgaactctggagctaagcatgtcttggatgcagtggacccgaatgcctacgacgctttc
aaggcctcccgtaacctaggggacgtgatagagcgcgtgctgaggaaccagcaggacgcc
accaacggctcaggccccaggaagctcctcactattgaagcctccctcatgaccccagtg
cagcctatgctggctgaggcgtgcaagtccatccagtacgccatgaagaagtgccccaac
ggcatgtactctgaaatcaagtatgacggcgagcgtgtccaggtccacaagaatggagac
cacttcagctacttcagccgcagccttaaacctgtgttgccacacaaggtggcccatttt
aaagagttcatccctcaggccttcgttggtggcaacagcatgatcctggatgccgaggtc
ctcctcatcgacaccaataccagcaagccactacccttcgggacactaggggtgcacaag
aaagcagcctttgaagacgccaaagtgtgtttgtttgtcttcgactgcatctatttcaac
ggcgtgagcctgatggagaagcccctgtacgaacgaaggaagttcctccatgacaacatg
gtggaggttcccaacaggatcctgttctccgagatgaagcacgtcactagggcgactgac
ctggccgagatgatcacacgggtcatcagagagggactggaggggctggtcctcaaagac
ctcaagggcacctatgagccagggaagcgccactggctgaaggtaaaaaaggactacctg
aacgagggagcaatggccgacacagcagacctggtggtgctgggagccttctatggcaaa
ggctcaaacggcgggataatgtccagtttcttaatgggctgctatgacccgaactctaag
aagtggtgcaccgtgaccaagtgctccggaggctacgatgacgccatgttgacccgactc
cagaaggagctggacgtgatcaaaatcagcaaggaacccagtaaaatccctggctggttg
aaaatcatcaagaactattaccctgattttattatccgtgatcctgagaaagcgccggtg
tgggagatcacgggggcggagttctccaagtcggagatgcacaccgccgacggcatatcc
atccgcttcccccgcatgacgcgtgtccgtgacgacaaggactggaagagcgccaccaac
ctgatgcagctcaaagagctcttccgcatctccaaggagaggtgtgactttgaggtgaca
gcagggccctccaaaggaggtgaggatgacaagggctcttcaggagacagtgggagcaac
tctccaccctccacctcccagagaccagtcactcccagaaagaccagcacaggcaacagc
aatacccccaaagctaaggcagtaaagacagagcctccctcccctgttccagcaaccaag
aggaaaatgccctcagaagagcccagcgcaaagaaggtaaagactgaaactgtccatcac
agtaatggacaaagcaagaatggacaaagcaagactaaaatggccccctccatgttggca
gaacccaggaatgacaagacttcctgctctccccagactctactggacattttcagtggt
gtgaagcttgtcctgccagactctgtgcaggaccacaccaagctgcggcgctactttgtg
gcctacgacggggacctggtgccggagtatgacgccacttcggccacacacaccctgact
gagcccgaggaggacagccatgcccagagagtcacccccggctggatctgggagtgtatc
cgcaagaggcgggtggtgcctccctgctga
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