Oncorhynchus gorbuscha (pink salmon): 124013200
Help
Entry
124013200 CDS
T07892
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo02010
ABC transporters
ogo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124013200
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124013200
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ogo02000
]
124013200
Transporters [BR:
ogo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124013200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
124013200
NCBI-ProteinID:
XP_046183393
LinkDB
All DBs
Position
LG24:12027005..12067995
Genome browser
AA seq
2280 aa
AA seq
DB search
MAVSTQLGLLLWKNFTYRRRQTLQLVIEIIWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGETPGLVGNFNDSIISRLFIDAKKILLYSQNDK
SFEGYKVLVRALRKLQGNTAGFKLKDFLRDKETLSSFLHRNASLSHHAVQQIVEADLNLE
KVLIGGFGVHLRDMCNTTSLEEFVTISDKNVSRLTQDIICKASPDWLNKAQDHFLSNLDF
LKPIRKDVKSDPEVVQKVSAATDGLLESLGALAVELASMKSWKEMRNEIHYLTANATGSP
SHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGGNGSDDQPVSAYDNTSTPY
CNSMMRSLEASPVSRMIWRALKPLLMGKILYTPDTPATQRIIHEMNKTFQELGLLRDLGG
MWEEMRPNVWTFMESSDEMHLVRTLLQNNASARFFNDRLAGTEWKAEDVARFLTKTAEDK
RPAGSAYTWREVFNETDDAIRTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAG
IVFPDIARSNSSDLPGNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDVIEQGIVRAVTGSKEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAL
IIKGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISASLLVVILKMGNLLPYSN
PCVVFLFLASFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKVIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSICLMLFDSFL
YGVMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKQGKNIQERKEGNAEAVCIEEEPSHI
EPGVYIKNLVKVYSHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMEQI
VNDIGLPHKRQCRSNTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFD
LTLSSCRNSSSSSSVSYSKKVGLPQPQPQALTVLKGDSVSESSSDAGLGSEPESEATTID
VTMISNVIFKHVPAARLVEDLGHELTYVLPYEAAKGGAFVELFHEIDDRLSDLGISSYGI
SDTTLEEIFLKVAEDSGVDAAELPNSDGTIPARRHRRHAFGDHQSCLKPFTEDDAFDFND
SEESRETDWLGGSDGKGSYQVKGWRLIRQQFVALIWKRFLYARRSRKGFFAQIVLPAVFV
CIALVFSLIVPPFGKYPSLELEPGMYEEQFTFISNDAPEDADTNKLLGALTNYDGFGSLC
NSPHAPCNTLDEEWAIPEVPESVRDIFMNGNWSMENPSPLCECSCEGRKKMLPECPAGAG
GLPPPQVKISDQGTLQNLTGRNISDYLVKTYAQIIGKSLKNKISVNEFRYGGFSLGARNT
QLLPPGDDIDQAISEIRRRFHLERGTAADRFLASLSSFIQGLDTKNNVKIWFNNKGWHSI
GSFLNVMNNGILRASLPAGQDSSKYGIRAFNHPLNLTKEQLSQVALMTTSVDVLVSICVI
FAMSFVPASFVVFLIQERVNKAKHMQFISGVQPFLYWLSNFIWDMCNYIVPATLVIIIFI
CFQQDAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGS
VSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRS
PLAWDMVGKNLFAMAVQGVVFFTITVLIQYRFCIKARSLRTDQKPIGEEDEDVARERQRI
LGGGGQSDILELKQLTKVYNRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGD
SIVTSGEAYLAGKSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVC
EVAEWGIRKLGLIKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKARRA
LWNCILSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTII
LRVAGPDPDLRPVMEFIEKELPGSTLKEKHRNMLQYQLSSSKTSLARIFSILAKNKEWLH
IEDYSVSQTTLDQVFVNFAKDQSDEDHLKDISVHKREAVAVDITQLKSFLTDEKARESCV
NT seq
6843 nt
NT seq
+upstream
nt +downstream
nt
atggccgtctctactcaactgggcttactgctgtggaagaacttcacctacagacggaga
cagacactccagctagttatcgagataatatggccgctcttcatcttcttcatcctcata
tctgtgaggatgcattacccgccctacgagcaacatgagtgccatttccctaacaaggcc
atgccctcggcgggcaccttgccctgggtacaagggatcatctgcaacgccaacaacccc
tgcttccgccaccccacaccaggagagaccccagggctggtgggcaacttcaacgattct
ataatctcccgtctgttcatcgatgccaagaagatcctcctctacagccagaatgacaag
agcttcgagggctacaaggttctggtgcgggctctgaggaaactacagggcaacacggca
ggtttcaagctgaaggactttctccgcgataaggagaccttgtcgtcgttcctgcatcgc
aacgcctccctatcccatcacgccgtccagcagattgtggaggctgacctcaacctagag
aaggtcctgattggaggtttcggcgtccatcttagagatatgtgtaacaccacttctctg
gaggagtttgtgaccatctccgacaagaatgtgtcacggctcactcaagacatcatctgc
aaggcctcccctgattggctgaacaaggcacaggaccacttcctgtccaacctggacttc
ctaaaacccatacggaaggacgtgaagtccgaccctgaggtcgtccagaaggtatccgcg
gcaaccgacggtctgctagagagcttgggagcgctggctgtagagctggccagtatgaag
agttggaaggagatgcgtaacgagatccattacctgacggccaacgccacgggctccccc
agccacatgtaccaggccgtgtcccgtatcgtctgtggccaccccgagggcggcggactg
aagatcaagtcgctcaactggtacgaggacaacaactacaaggccctgttcggtaaccac
ggcggcaacggcagcgacgaccaacccgtgtccgcctacgacaacacctcaactccgtac
tgtaacagcatgatgaggagtctggaagccagccccgtctccaggatgatctggagggcc
ctgaagcctctcctcatgggaaagatcctctacacccccgacactcctgccacacagagg
atcatacacgagatgaacaagacgttccaggagctgggtctcctgagggacctgggtggg
atgtgggaggagatgaggcctaacgtctggaccttcatggagagcagtgatgagatgcac
ctggttcggacgctgcttcagaacaacgccagcgcccgcttcttcaacgaccgcctggct
ggcacagagtggaaggcggaggacgtggcccgcttcctgaccaagactgccgaggacaaa
cgccccgccggctcggcctacacctggagagaggtgttcaacgagaccgacgacgctatc
aggaccatctcccgctttatggagtgtgtgaacctggataaactcgagccagtggccaat
gaggaaagactggtcaacaaatccatgggtctcctggacaaccagaagttctgggctggg
atagtgttcccggacatcgcccgtagcaacagttctgacctgccgggtaacgtcaactac
aagatccgcatggacatcgacaacgtggagcgcaccaacaagatcaaggacggttactgg
gaccctggtcctcgggcggacccctttgaggacctgcgctacatctggggcggtttctcc
tacctgcaggacgttatagaacagggcatcgtcagggcggtgacaggcagtaaggagaag
acgggagtctacatccaacagatgccttacccctgttacgtggacgatatgttcctgcgg
gtgatgagtcgctccatgcctctcttcatgaccctggcctggatgtactctgtggccctc
atcatcaagggcgtggtctatgagaaggaggcgcggctcaaagagaccatgaggatcatg
ggattggacaacggcatcctgtggctcagctggttcatcagcagcctcatccccctgctc
atctccgcctcgctgctggtggtcatactcaagatggggaacctgcttccctacagcaac
ccttgtgttgtcttcctgttcctggcttccttcgctgtggtaaccatcatgcagtgcttc
ctgatcagtaccatcttctcccgtgccaacctggcggcggcctgcggaggaattatctac
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactacgtgggcttcggg
gctaaagtcattgtgagcctgttgtccccagtggcgtttgggttcggctgtgagtacttt
gccctgtttgaggagcagggagtgggaatccagtggtccaacctgttgtccagccccttg
gaggaggacagctactccctcaccacctccatctgtctcatgctgtttgactccttcctc
tatggggtcatgacctggtacatcgaggctgtcttccctggccaatatgggatccccaga
ccctggtacttccccttcaccaagtcctactggtgtggagagaaacaagggaagaatata
caagaaagaaaggaaggaaacgcagaagctgtgtgcatcgaagaggagccgtctcacatc
gagcctggtgtttacatcaagaacctagtgaaggtatatagccatggcaacaagctggct
gtggacgggttgaccctgggtttctacgaggggcagatcacctccttcctggggcacaac
ggagccggcaagaccaccaccatgtccatcctgacgggtctgttcccgcccacctctggc
accgcctacatcctgggcaaggacatccgttcggagctcagcgccatcagacagaacctg
ggcgtctgcccgcagcacaacgttctcttcagcatgctgacggtggaggagcacatctgg
ttctatgcccgtctgaagggtctgtctgaggagaaggtgaaggctgagatggagcagatc
gtcaacgacatcggcctgcctcacaaacgccagtgtcgtagcaacacgctgtccgggggc
atgcagaggaaactgtcagtggcgttggcgttcgttggagggtcaaaggtcgtgatcctg
gatgaacccactgctggagtcgacccctacgcacgccggggaatttgggacctgcttctg
aagtatcgtgcaggccgcaccatcatcctctcaactcaccacatggacgaggcggacatc
ttgggcgaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggctcctccctg
ttcctgaagacccagctggggacgggctactacctgaccctggtgaagagagacttcgac
ctgaccctcagctcctgcaggaactcctccagcagcagctctgtctcctacagcaagaag
gtgggcctccctcagccgcaacctcaggccctcacagtcctaaagggggacagtgtttct
gagagcagctctgatgctggactgggtagtgaacctgagagtgaagccaccactattgac
gtaaccatgatctccaatgtgatcttcaagcacgtccccgccgccaggctggttgaggac
ctgggccatgaactcacctacgttctgccctacgaggcggccaaaggtggagccttcgtg
gagctcttccacgagatcgacgaccgcctgtctgacctcggcatctccagctacggcatc
tcagacaccaccctggaagagattttcctgaaagtagcagaggacagtggagtggacgct
gctgaacttcccaactctgatggcaccatcccggctcgtaggcaccgcagacacgcgttc
ggagaccaccagagctgcctgaaacccttcaccgaggacgacgctttcgacttcaacgac
tcagaagaatctcgtgagacggactggctgggaggctcggatggtaaaggctcgtatcag
gtcaaaggctggcgtctgattagacagcagtttgtggcattgatatggaaacgcttcctg
tatgcccggcgctccaggaaaggcttcttcgctcagatcgtgcttcctgctgtgtttgtg
tgcatcgccctcgtcttcagtctcatcgtccctccgtttggaaagtaccccagtctggag
ctggagcctggcatgtatgaagaacagttcaccttcatcagcaacgacgcccctgaggat
gcagacactaacaagctgctgggtgccctgacaaactacgatggctttggttcactctgt
aactcacctcacgctccttgtaacacgttggatgaggagtgggccattcctgaggtaccg
gagagtgtgagggacatctttatgaatggcaactggagtatggaaaacccctctcctctg
tgtgagtgcagctgtgaaggacgcaagaagatgctacctgaatgcccagcgggagctggt
ggtcttcctcctccacaggtgaaaatcagtgaccaaggtaccctgcaaaatctgactggc
agaaacatctcagattacctggtcaaaacctatgctcagattatcgggaaaagtttgaag
aacaaaatctcggtcaatgaattcagatatggtggattctcattgggcgctaggaacact
cagctcctcccaccaggtgatgatattgatcaggccatctctgagatcagacgacgcttc
cacctggaaagaggcactgctgctgaccgtttccttgccagcttatccagttttatccag
ggactggacactaagaacaacgtcaagatctggttcaacaacaaggggtggcacagcatc
gggtctttcctgaacgtgatgaacaacggaatcctgcgcgccagcctgcccgccggccag
gactccagcaagtacggcatccgtgccttcaaccacccactcaacctcaccaaggagcaa
ctgtcccaggtcgcactgatgaccacctctgtggacgtgctggtgtccatctgcgtgatc
ttcgccatgtctttcgtcccggccagcttcgtagtcttcctcattcaggagagagtcaac
aaggccaaacacatgcaattcatcagtggggtgcagcccttcctctattggctgtccaac
ttcatctgggacatgtgtaactacatcgtccctgctactctggtcattatcatcttcatc
tgcttccaacaagacgcctacgtctcctccaccaacctgcctgtactggctctgctgctg
ctgctctatgggtggtccatcacacccctgatgtacccggcgtccttcttctttaagatc
cccagcacggcctacgtggtgctcacctccgtcaacatcctcatcggcatcaacggcagc
gtctccaccttcgtcctcgagctcttcggcagcaacgagatcggagggatcaacgacatc
ctgaagaacgtgttcctgatcttccctcacttctgtctgggccgaggcctcatcgacatg
gtgaagaaccaggccatggccgacgctctggagaggtttggtgagaaccggttccgttcc
cctctggcgtgggacatggtgggcaagaatctgttcgccatggctgtgcagggcgtggtc
ttcttcactatcaccgtgctcatccaataccgcttctgtatcaaggccagatctttgcgc
accgaccagaaacctatcggtgaggaggatgaagacgtggccagagagaggcaaaggatt
ctgggaggagggggacagtctgacattctggaactcaagcagctgaccaaggtgtacaat
agaaaacagaaaccagcagtggatcgtctttgtgtgggaattcctccaggagagtgtttt
ggtctgcttggagtcaacggagcaggaaagacgagcaccttcaagatgctgactggagac
tcaatagtcacgagtggagaagcttacctggcgggaaagagtgtgttgacggagataaac
gaggtgcaccagaacatgggctactgtcctcagtttgatgctatcaatgacctgctgact
ggcagggagcaccttgagttctacgccatcctgaggggggttcccgagaaggaagtgtgt
gaggtggcagagtggggcatccgtaaactaggcctgatcaagtatgtggacaaggcagca
gggagctacagtggagggaacatgaggaaactctccacggccatggcactgatcggtggt
cccccggtggtcttcctggacgagcccaccactggtatggaccccaaggccagacgggct
ctgtggaactgcattctcagtatcgtcaaggaggggcgatcggtggttctcacctcgcac
agtatggaggagtgtgaggccctgtgtacgcggatggccatcatggtcaatgggaggttc
cgctgcctgggcagcgtacagcacttaaagaacagatttggggatggctacaccatcatc
ctccgggtggcaggaccagacccggacctgaggccggtgatggagtttattgagaaggag
cttccaggtagcactctgaaggagaagcacaggaacatgctgcagtatcagctgtcctcc
tccaaaacctccctggcacgcatcttcagcatcctggccaagaacaaggagtggctgcac
attgaggactactccgtttcccagacaacactagaccaagtgtttgtcaatttcgccaag
gaccaaagtgacgaggaccacttaaaagacatttccgtgcacaagcgagaggcggtggca
gtggacattactcagctcaagtctttcctcaccgacgagaaggccagggagagctgtgtg
tga
DBGET
integrated database retrieval system
