Oncorhynchus gorbuscha (pink salmon): 124013289
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Entry
124013289 CDS
T07892
Symbol
cica
Name
(RefSeq) protein capicua homolog isoform X1
KO
K20225
capicua transcriptional repressor
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124013289 (cica)
Transcription factors [BR:
ogo03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
124013289 (cica)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4819
HMG_box
HMG_box_2
Zf_WRKY19
Motif
Other DBs
NCBI-GeneID:
124013289
NCBI-ProteinID:
XP_046183511
LinkDB
All DBs
Position
LG24:complement(29505166..29554436)
Genome browser
AA seq
2572 aa
AA seq
DB search
MKPIKKQGRRSPPSTRAKGGKRRGTGDSGEKRDSDENRDRSPKSQTSPQTSSHSESSQEE
SVTLTTMATPEREGHREGPRVPETAAAAAGPLPGKSEDSLPGSFKSLSAHSTDSSSSATS
AANSPNPSSNRKTATFKARVPKKKYTSEHCAAAAAAAAAANHGGPGNTGAPPLNRNSAHS
DSNAGSQLSSLSSGPGSAAREGGSLTDINSQTRRPVEDYITTIAPPQDRDNTPGPPPTGD
RDRRGPEGGREISPSPVRCSSTDTASEHDLDVSEPHRSNSHHANPTPEAHTLALVQRSTP
QTPTPQSLSDALADALAKGLKNQRVLARQARRRTVKGEEENGGGGRESMDSVFRAGVVRR
VSGEHGSLEVQLNDEKELYRYPFREGAQGPVDIIMDAPPPGSQAVPIGTPVCVPFGGNED
GGTTEAQRQWYREGLVTQVDSHPAVSYPYRVLLEDRVPPGDEEGDGRVGTPTAVWVSRQS
LRLLVPPWDLDLGPCGGGREESDAAAKRGREREREKEDRDEIEVEQELCRLSRGMGLSAT
VAGSVLGRLSYPGTAPASSSSSTVSSPVTPASVLSLVPGRDWEREKDLVERERELQRKQE
RDNRERAKQHHHFMPLTPEEDIEVSHFSMVPMGAAGGAVNTGPLTVSQHRHILSKPPPGY
LSPHLSVVRSLGGTPLVGPHLALNPHPPPSPTVLLGLESGALAAGAAVIATSQLPPLSSS
SSRGSLDKPPSSNSNSHGASGGGGGSGSTSSSRSRTPLTAAQQKYKKGDVVCTPTGIRKK
FNGKQWRRLCSREGCSKESQRRGYCSRHLSMRTKEMEASGGGRDRGGASSTGTLTPSDLR
LGGGRTSSEFDWDNTSRDSSEASSRGGDSRPRLVLPSLLPQDLSRFDFDECEAATMLVSL
GSSRSGTPSFSPISNQSPFSPTPSPSPSPLFVFRPATFSPITAPPSLTPRRHRHLSGTKV
GTPGSERERHLSGIVPTFQTNLTFTVPMSPSKRKLDALPPPLPLSAQDYSKSDQQLGENI
GLSPAAFRVLSPQSQPTTPSSLSFPRPRSATSRPPSSAASTPPPMLVSPTPPSPLPQDPS
PRRVVPLRDSPVIVRNPDVPLAKFTDGPLVRRGGGGRSSREHSQPLHLATGLQAPVPING
ATTNGAVLLRNPASTLVLVTSSQSLTPAVAGHPAHSSPTLSGGSASISSTGSALSSSGSG
GREWERKPGGHQDAIGGALPQPVACHPSPTALLPLILPAESPHPAPRKDIIIGRPGTVWT
NVEPRSVPVFPWHSLVPFLEPSQSSAAAQPADGQQLVNQSKEPRCGVAVVSDGWVGPPDA
EQGSPSRPPPSSNDNDPPAGRAERGGADSETESDADDPFFPGVANDPAPSTGPIKRRTQS
LSALPKDGDRKREKDHIRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGP
KEKQKYHDLAFQVKEAHFKAHPDWKWCNKDRRKSISEGRETPGAKEARERSMSESTEPES
VSQGMEVKGAAGPDWPGGSERHAGAYSGQLPRPRAFSQSAVHSLERRERARDVEKLCRDG
AGSFRSRPPTLSLTQCGASEDVTSDEERMVICEEEGDDDVMEDSCPEGSIDLKCKERVTD
SDEDEPDGQRVFQPVVRSSLPYATSTSHADSHSDSTKGNTGGSTGESSERKRKRGMEGGE
EGSGESKRGGGGGQVPSNSIPGSAPITSTPALGYGLTQVLGAVRMAPTMVTNVVCPIAST
PIPITSKPMEGHIALSALPGEKKATLLIGGPGAVGGPITAGGGYLSSSSPNPVSVGPGGL
QVTSLVLGGAFPNQSIQLIAPPQHLLSPTHSTLPLPLPLLQPQFLPAASLTSAGDAKPGL
TQVQYILPILSSVSANPKSPSPQLTQQPTGILTLPSTPPTHVFQANGIHSGAGAGIRYAA
VGGVSPGARAQAQSPVLQSKMLVPMATVRTGSTPPQPISHVAPPLPVQNGALPGNKIIHI
APMPMVQTNVHPAGAVHPGSPFPVSMATATVMTPGIKPPQTVLLTSPPTRITYVQSSTGV
VSTATVQAPLSPGPTYLPSSLTSLGFTAIAPAGQALMQPLVAGQPPLLAPALSPGAPGTG
RQLLTAIYPAPSITLASGVVVTSVPPNLAQEVSGQSSASAVGVQGSKDVTRSHEEGMPHL
TAELEQKSQVEGQAQRKNKAQIKKENTTEDAEAYSKPGANSMSSSKIPTGSEEDGGRASH
MKEENTDDDRDYARGNGEREREIKKESGTPEPEESREAEDWPHEGHHKGDSGNGYQGKEA
GPREPLHPTTGLDPPPPPPQTDRDVPPSAKKTKFRPPPLKKPSDAIEKVLSGSYFEERFA
ELPEFRPEEVLPSPTLQSLATSPRAILGSYRKKRRNSTDLDSSAEDPSSPRRKAAARSRL
SSCSSEPNTPKSEVKCEGDIFTFDRAGAESEDVLGEMDKVPYSSLRRTLDQRRALVMQLF
QEHGFFPSAEDQGGEAEDHADSHTWNPPESLSPAGQQQGSWVQRTPPRPPSAPPIPTLEM
VQGRSQEKEGGVPRSPGTWANCRNGKKEKWKEGEKQENREGGEKVSKKREEC
NT seq
7719 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgattaaaaagcaaggaaggcgctcgcccccgtcgacccgagccaaagggggg
aagagacgggggacaggggacagtggagagaaaagagactcggacgagaacagagaccga
tcccccaaaagtcagacctcaccccaaacctcatctcactcagagtcttctcaggaggag
tcggtgacactcacaacgatggccacgccagagagggagggccacagagaggggccccgg
gtcccagagacagcggccgcagcagcagggcccctccctgggaagtcggaggactccctc
ccagggagcttcaaatcgctgagcgcccacagcacagacagcagcagcagcgccaccagc
gctgccaacagccccaacccctcgtccaaccgcaagacggccaccttcaaggcccgcgtc
cccaagaagaagtacacctctgagcactgtgctgccgccgccgccgccgctgccgccgcc
aaccacggaggccccggcaacacaggcgcgcctccactgaacagaaatagtgctcacagt
gacagtaatgccggaagtcagttgtcgagcttatcttcggggcccgggtcagcggcgagg
gagggcggttcgctcactgacatcaacagtcagaccaggagaccagtggaggactacatt
accactatagctccaccacaggacagggacaacacacctggaccccctcccacaggggac
agagacaggagaggcccagagggaggcagagaaatctcccccagccctgtccgctgctcc
tctactgacacggccagcgaacacgacctagacgtgagcgagccacaccgctccaactct
caccacgccaaccccacccccgaagcacacaccctggccctggtgcaacgtagcaccccg
caaactccgaccccacagagcctgtcggacgcgctagccgacgccctggccaaaggtcta
aagaaccagcgggtgctagccaggcaggctcggaggaggactgtaaagggggaagaggag
aacggaggagggggtagggagagcatggactcagtgttcagagcgggcgtggttcggcgg
gtgagcggcgagcacggcagcctggaggtgcagctgaacgacgagaaggagctttaccgc
tacccatttcgtgagggcgcccagggacccgtggacattatcatggacgccccgccgccc
ggctcccaagcagtccccatcggcacccctgtgtgcgtgcccttcggaggcaacgaggac
ggcggcaccacagaggcccagcgccagtggtaccgagagggcctggtcacccaggtggac
tcccacccggctgtgtcctacccctatagagtgttattagaggatagagtgcccccaggg
gatgaggaaggggatggcagggtgggcactccgaccgctgtgtgggtgtcccgccagagc
ctccgcctgctggtgcccccctgggacctggacctgggaccctgcggaggggggcgagag
gaaagcgatgccgccgccaagagagggcgagagagggagagagagaaagaggacagggat
gagatagaggtggagcaggagctgtgtcgcctcagccgtgggatggggctcagcgcgact
gtggctgggtccgtgttggggaggctttcataccctggaacggcccccgcctcctcgtct
tcctccactgtcagctcccccgtcacccccgcctcggtgctgagtctggtgcccggaaga
gactgggagcgagagaaggacctggtggagagagagcgggagctccagaggaaacaagag
agagataaccgagagagggccaagcagcaccaccacttcatgcccctgacccccgaggag
gacatagaggtgtctcacttcagcatggtgcccatgggggcggcggggggggcggtcaac
acaggcccactgacggtgtcccaacacaggcacatactctccaagccgcccccgggctac
ctcagcccccacctgtctgtggtccggagcctcggaggcaccccgctggtgggcccccac
ctggccctcaacccccacccccctccctcccccacggtgctactggggcttgagtcggga
gcactggcagcgggggcggccgtcatcgccacctctcagctccctcctctgtcctcctca
tcctcccgcggctccctggataagccgccctcttcaaactccaactcccacggcgcatct
ggagggggtggaggctcgggttcgacttcctcgtcgcgctcccgcaccccgctcacggcg
gcccagcagaagtacaagaagggcgacgtggtgtgtacccccacgggcatccgcaagaag
ttcaacggcaagcagtggaggaggctgtgctccagagagggctgctctaaggagtcccag
agaagaggctactgctcgcgtcatctctccatgagaactaaagagatggaggccagcgga
gggggcagagaccgtggcggggccagcagtacgggcaccctaaccccgtcagatctgagg
ctgggcggcggccggaccagttcagagttcgactgggacaatacgtcgcgagacagcagc
gaagcgagcagtaggggaggggattcacgaccccgcctggtcctgccctcgctcctgccc
caggacttatcacgcttcgactttgatgagtgcgaggcggccacaatgctggtatctctg
ggcagctcccgctcgggcacgccttccttctctcccatctccaaccagtcgcccttctcg
cccacaccgtcgccctcgccttccccgctcttcgtcttccgcccggccaccttcagcccc
atcacggcgccgccttcgctcacccctcgccgccaccgccacctgagcggcactaaggtg
ggtacgccgggctcggagcgcgagcgccacctgtcgggcatcgtacccaccttccagacc
aacctcaccttcactgtgcccatgagccccagcaagcggaaacttgatgcccttcctccg
cccctgcccctctctgcccaggattactccaagtccgaccagcagttaggggagaatata
ggcctaagcccagccgccttcagggtgctctctcctcaaagccagcccaccaccccctcc
tcactctccttcccccggccccggagcgccaccagccgccccccgtcctccgccgcctcc
acccccccgccaatgctggtgtctcccacccctccctctccccttccccaggaccccagc
ccccgccgcgtcgtgcccctgcgagactcccccgtcatcgtgcggaaccccgacgtcccc
ctggccaagttcacagatggacccctggtgaggaggggaggaggaggccgctcctccaga
gagcacagccagcccctgcaccttgccaccggcctccaagcacccgtgcccatcaacggc
gccaccaccaatggcgcagtcctcctgcgaaaccccgcctccacccttgtccttgtaacc
tcctcccagtccctgaccccagccgtcgccggacaccctgcccactccagccccaccctc
agtggtggctccgcctccatctcctcgactggctccgccctctccagctctggatcagga
ggaagggagtgggagaggaagcccggcgggcaccaggacgccattggaggggcattgccc
cagccggtagcctgccacccctctccaaccgccctgctgcccctcatcctaccagccgag
tcccctcaccctgcaccccgcaaggacatcatcattggacgacccgggacagtatggacc
aatgtggagcctcgttcagtgccagtgtttccttggcattcattggtccctttcctggag
cccagccaatcgagtgcggctgcccagcccgctgatggccaacagcttgtcaatcagagc
aaagagccccgttgtggggtggccgtagtgagtgacggatgggtgggtccaccagacgca
gagcaagggtctccatcccgcccaccaccctcctccaatgacaacgaccccccagctgga
agagcagaaagaggtggagccgacagcgagacggagagcgatgcagacgacccgtttttt
ccgggtgtagccaatgatcctgccccgtctacgggccctatcaagaggcgcactcagtcc
ctcagcgcccttcccaaagatggagacagaaagagggaaaaggaccacattcggcggcca
atgaacgcgttcatgattttcagcaagcgtcaccgggcactggttcatcagaggcacccc
aaccaggacaaccgcacggtcagcaagatcctgggcgagtggtggtacgccctggggccc
aaagagaagcagaagtaccacgacctcgccttccaggtgaaagaggctcacttcaaggcc
cacccagactggaagtggtgcaacaaggacaggaggaagtctatctctgagggccgagag
accccaggggccaaagaggcccgcgagaggagcatgtcggagagcacagagcctgagtca
gtctctcagggaatggaggtgaagggtgcggcaggcccggactggcctgggggctctgag
cgtcatgcgggggcctacagtggtcagctccctcgcccccgggccttctcccagagtgca
gtacacagcctggagaggagggagcgggccagagatgtggagaagttgtgtcgagatggg
gcaggctcattccgcagccgcccccctactctctccctgacacagtgtggggccagcgag
gacgtgaccagcgacgaggagcgcatggtcatctgtgaggaagagggggacgatgatgtc
atggaggactcgtgccctgagggatccatagacctcaagtgtaaagagagagtgactgat
agtgacgaggatgagccggatggacagcgagtcttccagccagtggtccgctcctctctc
ccctatgccaccagcacctcccacgccgactctcactccgactctaccaaggggaacaca
ggggggagcactggagagagctctgagaggaagagaaaacgagggatggagggaggagaa
gagggaagtggagaatccaaaagaggaggtggaggggggcaggttccctctaattccatc
cctggatcggcgcccatcacctcgacccccgctctgggttatggactcacccaggtgctc
ggtgcagtccggatggcccccaccatggtgaccaatgtggtatgccccatcgccagcacg
cccatccctatcaccagcaagccaatggaaggtcacatcgccctcagtgccctccctggg
gagaagaaagccacgcttctgattggtggaccgggagcagtaggtgggcctatcacagca
gggggtgggtacttgtcctcgtcctctcccaatcccgtgagtgtggggccgggggggctg
caggtcaccagtctagtgctgggaggagctttccccaaccagtctatacagctcatagcc
ccgcctcagcatctcttaagtcccacccacagcaccctgccacttcccctccccctgctg
cagccccagttccttcctgccgcctctctcacctccgctggcgatgccaagcctggcctc
acccaggtgcagtacatcctgcccatcctgtcttctgtcagtgccaaccccaagagcccc
tccccccagctaacccagcagccaaccggcatcctcacgctgccctccactccgcccacc
catgtcttccaggccaatggaatacattcgggggcaggagcgggaataagatatgccgca
gtgggaggggtcagtcctggagcaagagcccaagcccagtctccagtcttgcagagcaag
atgttggttcccatggcaacagtgagaacaggctctactcctcctcagcccatctcccac
gtggcccctccccttcctgtgcaaaatggtgctctaccaggaaacaagatcatccacatc
gcccccatgccaatggtccagacaaatgtccaccctgctggagcagtgcatcctgggagt
cccttccctgtatccatggcaacagccactgtgatgactccgggcatcaaaccccctcag
actgtgttgctgacctcgcctccaacaaggatcacttatgtccaatccagcactggagtg
gtctccacggcaacggtccaggcccctctctctccaggacccacctacctgccgtcgtcc
ctgacgtctctgggcttcaccgccattgctccggccggccaggccctgatgcagcctctc
gtagcgggccaaccgcccttgctagccccagccctttcccctggagccccggggacggga
cgtcaactcctcaccgccatctacccggccccaagcatcaccctagcgtcaggtgtggtc
gtgacctccgtgccccccaatttggctcaagaagtgtctggccaatcatcagcctcggct
gtcggcgtgcagggttcaaaggacgtgacccggtcacatgaagagggaatgccacacctg
actgcagagttggagcaaaagtcacaggtggagggccaggcccaacggaagaacaaggct
cagataaagaaagagaatacgacggaggatgccgaggcatatagcaaacctggtgctaac
tcaatgtccagcagcaaaataccaacagggagtgaagaagacggtggtcgagccagccac
atgaaagaagagaatacggacgatgaccgagattatgccagagggaatggagagagggag
agggagataaagaaggagagtgggacgcctgaaccagaggagtccagggaggcagaggat
tggccccatgagggccaccacaaaggggacagtggcaacgggtaccagggcaaagaggct
ggaccgagggaacctctccaccctaccacaggactggaccctcctccgcctcccccacag
actgacagggacgtgcccccctcagccaagaagaccaaattccgccccccgccgctcaaa
aagccctcagacgccattgaaaaggtcctgtcggggtcctatttcgaggagcgctttgcc
gagctgccagagttcagaccagaagaagtgctgccctctcccaccctacagagtctggcc
acctccccccgagccatactgggcagctaccggaagaagaggaggaactccacagacctg
gactcgtctgcagaggaccccagctctcccaggaggaaggctgccgctcggagccgtctc
tccagctgcagctcggagcccaacacaccaaagagcgaggtcaagtgtgagggggacatc
ttcaccttcgacagagctggtgctgagtctgaggatgtcctgggggagatggacaaagtg
ccgtactcctctctccggaggactctggaccagcgcagggctctcgttatgcagctcttc
caggaacacggcttcttcccttcagctgaagatcagggaggtgaggcagaagatcatgca
gacagccacacctggaaccccccggaatctctgagcccggcgggtcaacaacaggggtca
tgggttcaacggactccgcctcggccgccatcggctcctccaataccaacactcgagatg
gtacagggacggagccaggagaaagagggcggagtcccgaggagcccaggaacgtgggca
aattgtaggaatggaaagaaggagaaatggaaagaaggagaaaagcaagagaatagagaa
ggtggagagaaagtgtcaaaaaagagagaggagtgttga
DBGET
integrated database retrieval system
