Oncorhynchus gorbuscha (pink salmon): 124013381
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Entry
124013381 CDS
T07892
Name
(RefSeq) thrombospondin-3b-like
KO
K04659
thrombospondin 2/3/4/5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04145
Phagosome
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124013381
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
124013381
09144 Cellular community - eukaryotes
04510 Focal adhesion
124013381
09142 Cell motility
04820 Cytoskeleton in muscle cells
124013381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124013381
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124013381
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124013381
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Phagocytosis
Opsonins
124013381
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124013381
Exosomal proteins of colorectal cancer cells
124013381
Exosomal proteins of bladder cancer cells
124013381
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124013381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_CA
cEGF
EGF_3
Motif
Other DBs
NCBI-GeneID:
124013381
NCBI-ProteinID:
XP_046183645
LinkDB
All DBs
Position
LG24:34388085..34418274
Genome browser
AA seq
955 aa
AA seq
DB search
MDMGRLMLNVLLVSASLLLGFSRSSEMQVIDMLELHDAKQSASAVGKMSGALGFVSDLYL
VSTLRLPPKLGGVLLGVYNKDDNRKYLEVALMGKVNKVLVRYVREDGKLHTVNLQNPGLS
DGRTQSLILHVGGLRRNHLHMELYVNCRLADSAQVLPSFVQLPSEAESVEIRNGQKAYAR
LQGSVDSLKMALGGSIAKAGILTDCPFQGDTYFQNSAGADVNAILGDHTKALIGQLIIFN
QILGELREDIREQVKEMSLIRNTILECQACGFHEPHSRCEPNLCYKGVPCTETREYPGYR
CGACPEGMTGNGTHCKDIDECAVARPCFSPEGCVNTAKGFTCESCPVGFSGSLLSGVGVE
FAKSHKQECTDVDECADLSNTCVPNSVCINTEGSFRCGLCKESFVGNQTVGCFLRRSCAT
LGFNPCDVNGHCVIKGAAEVSCKCNVGWAGNGYTCGPDTDSDGYPDQPLPCIDNDYHCRA
DNCVNTPNSGQEDADGDGIGDQCDEDADGDGIQNVEDNCRLVPNKDQQNSDTDSYGDACD
NCPNVPNGSQKDTDGNGAGDTCDNDIDGDGIPNVLDNCPKMPNPMQTDRDGDGVGDACDS
CPEVNDPLQSDMDNDLVGDVCDTNQDMDGDGHQDSRDNCPDVPNSSQLDSDNDGIGDECD
DDDDNDGIPDAGPPGPDNCRLIPNPSQTDTDRNGIGDMCENDFDNDSVIDLIDVCPESAE
VTMTDFRAYQTVILDQEGEAQIDPNWIVLNRGMEIVQTMNSDPGLAIGITAFNGVDFEGT
FHINTATDDDYVGFIFSYQDSSSFYVVMWKQMEQTYWQSLPFRAMAQPGLQLKAVKSRTG
PGEYLRNALWHTGDTPGEVTLLWKDPRNVGWRDKTSYRWHLSHRPQVGYIRVRLYEGMTL
VADSGVVVDTSMRGGRLGVFCFSQEQIIWSNLGYRCNDTVPEDYEFYRKQMHIRV
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggatatggggaggcttatgctaaatgttctacttgtgagcgcgtcgcttctcttgggc
ttcagcaggtcttcagaaatgcaagtgattgacatgctggagctgcacgacgccaagcag
agtgcgtccgcggtggggaagatgtcgggggctctgggcttcgtgtcggatttgtacctg
gtgtccactctgcgactgccgcccaaactgggaggtgtgctgctgggcgtctacaacaaa
gacgacaacaggaagtacctggaggtggccctcatgggcaaggtcaacaaagttctggtg
cgctatgtacgtgaggacggtaaactccacacagtgaacctccagaaccccggcctctcc
gacggacgcacccagtcactcatcctccacgtgggtgggctccgacgaaaccacctccac
atggaactctatgttaactgccgattggccgactcagcacaggttctgccgtcatttgtc
cagctcccatcagaggcggagtctgtggagatacgaaatgggcagaaggcctatgccagg
ctacagggctcagtggactctctgaaaatggctctgggtggctccatagccaaagcagga
atcttgaccgattgtccatttcagggtgatacatattttcaaaattcagctggtgccgat
gtcaatgccattctgggtgaccataccaaggctttgattggccagctgatcatcttcaac
cagatcctgggtgaactccgagaggacatcagggaacaggtgaaggagatgtctctgatt
aggaacaccattctggagtgccaagcgtgtggcttccacgagccccactctcgctgcgag
cccaacctctgctataagggcgttccctgtacagagacccgggagtacccaggctaccgt
tgtggtgcctgcccagaaggcatgacggggaatggcacccactgcaaggacattgacgag
tgtgccgtagcccggccctgtttctcgcccgaggggtgcgtaaacacggccaagggcttc
acctgtgaatcctgtcccgtcggcttctcaggatccctcctcagtggggttggggtggag
tttgccaagagccacaagcaggagtgcacagatgtggatgagtgtgctgacctctccaac
acctgcgtccccaactctgtctgcatcaacacagagggctcgttcaggtgtggtctgtgt
aaggagagctttgtgggcaaccagacggtgggctgtttcctgcggaggtcctgcgccacg
ctgggcttcaacccctgcgacgtcaacggccactgtgtcataaagggtgctgccgaggtc
tcctgcaagtgtaatgtgggctgggcaggaaatgggtatacgtgtggtccagacacagac
agcgacggctatcccgaccagcctctcccctgcatagacaatgactatcactgtcgagct
gacaattgtgtgaacacacccaactctggccaggaagacgcagacggagacggtataggt
gaccagtgtgacgaagatgctgacggagacggaatccagaacgtggaggacaactgccgt
ctggtccccaacaaggaccaacagaactctgatacagactcatatggggatgcgtgtgac
aactgccccaatgttcccaatggcagccagaaggacaccgacggaaacggggctggagac
acctgtgacaatgacattgatggggatggtatcccaaacgtgctggacaactgtcccaag
atgcccaaccctatgcagacggaccgtgacggggatggagtgggagacgcatgtgacagc
tgcccagaagtcaacgaccccttgcagtctgacatggacaatgacctggtgggagacgtg
tgtgacaccaaccaggatatggatggggacggccaccaggactccagggacaactgtcca
gatgtccctaacagctctcagctggactcggacaacgacggcatcggcgacgaatgcgac
gatgacgacgacaacgatggcattccagatgctggacctcccgggccggataactgccgg
ctcatccccaaccccagccagacagacactgacagaaatggcattggtgacatgtgcgag
aatgactttgacaatgactcagtgatagacttgattgacgtgtgtccagagagcgctgag
gtcacaatgaccgacttcagagcctatcagacggtcatcctggaccaggagggcgaagcc
caaatcgaccccaactggatagtgctcaatcggggtatggaaattgttcaaaccatgaac
agcgaccctggtttggccataggcatcacagcctttaatggggtagactttgaggggacg
ttccacatcaacacggccacggacgatgactatgtgggcttcatcttcagctaccaggac
tcgtccagcttctacgtggtcatgtggaaacagatggagcagacctactggcagtcgctg
ccttttagggccatggcccagccaggcctgcaactgaaggcagttaagtcacgtacgggt
cccggtgaatacctccgtaatgccctgtggcacacgggcgacaccccgggtgaagtcacc
ctgctgtggaaggaccccaggaatgtgggctggagggacaagacatcttaccgttggcac
ctcagccaccgcccgcaggtgggctacatcagggtgaggctgtatgaaggcatgacattg
gtagcagactctggcgtggtggtggacacctcaatgaggggcgggaggctgggcgtcttc
tgcttctcccaggaacaaatcatctggtccaacctgggctatcgctgcaacgatactgta
ccagaggactatgagttctaccgcaagcagatgcacatcagggtgtga
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