Oncorhynchus gorbuscha (pink salmon): 124013668
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Entry
124013668 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124013668
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124013668
09142 Cell motility
04820 Cytoskeleton in muscle cells
124013668
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124013668
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124013668
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124013668
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124013668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124013668
NCBI-ProteinID:
XP_046183998
LinkDB
All DBs
Position
LG25:complement(22420296..22518228)
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AA seq
1689 aa
AA seq
DB search
MNKNLKSLRNLAVGLVLVTLCIVVQESESAACHGCAAGSKCDCSGVKGGKGERGFPGLQG
QPGVPGFPGPEGPIGGRGEKGGDGPSGPSGPKGIRGPPGLPGFPGTPGIPGLPGQDGPPG
PRGTAGCNGTKGERGFPGSPGFPGLEGRSGPPGLPGQKGDLGDVISNDRFGQKGGVGLPG
LPGVPGNTGPAGLSGPVGPPGPRGYEGRSGPPGPPGPKGNMGLNFQGPKGDKGDPGLQGP
PGPPGQVGEQKRPTELEIQRGEKGDQGLPGPAGDPGYSGPPGVSGGSKGEKGEPGEAGKR
GKPGKDGDPGPAGFPGSKGDLGGPGLPGRDGDRGDKGDRGYPGPPGVVINGQTGARVGPK
GEPGFPGSSGRKGDRGQPGLSGPPGQPGTPGTGGVGQPGSPGFPGERGQKGDEGQPGISL
PGPPGRNGTPGLQGPPGPPGAAGVSTGGGNCLGGAPGLPGQQGDRGFQGETGQKGDKGET
CVNCFSRGNSIPGVPGPPGPPGFPGGPGGPGAKGDRGYPGGPGPSGSSGLPGPQGAPGFP
GEKGDPGEAIAVDGVRGDKGDTGFPGPPGLPGLDGGPGRNGVPGAPGPKGTSGSLLVKGE
RGPPGEPGLQGLPGDXGGPGSPGFGPQGPPGEKGVQGVSGRTGTPGSPGTKGEPGQTIAE
KGLPGPRGQDGDPGLPGNPGNPGGPGQPGFPGLPGAKGDPGLSGIGLPGPPGAKGFPGSS
GVPGGPGGPGRPGVDGLPGEPGGPGAKGEPGFGLPGPQGPPGFPGPKGLPGPKGDSGFPG
NPGSPGRSGFDGGPGAKGDSGIPGISGARGPPGSPSIGSQGIPGPIGPPGPMGSPGYSGA
NGEKGDPGSPGLDIPGLPGDRGSPGFPGNPGGVGPQGNPGGPGRDGLPGLPGGKGDMGVM
GAPGPLGSPGNPGAPGFPGPKGDDGFPGRPGGPGGSGLKGDRGEPGIAGLPGPSIPPQEL
KGGKGEPGAPGLGGLPGQKGIPGLPGDAGIPGQDGRPGLPGPQGPKGDAGIPGGSGSPGA
PGAKGNMGEMGFPGPTGAKGTPGQSGRSGGPGSSGASGFPGAKGEPGSPGFGSPGATGPK
GEPGQSGFPGQNGVKGTPGTPGLPGFPGGPGAKGDPGLPGFQGSPGIPGPKGLDGIPGNP
GLSGPPGRPGENGRAGSPGFPGDKGQAGRDGIPGPAGVKGDPGLPGFGGPGSPGLPGLPG
AKGDLGAPGSSGSPGFPGQKGEMGFSGLPGSPGSVGPPGAPGVALQGPKGNAGPPGPPGR
GGPEGPPGPPGSEGPRGPVGSGGTKGEKGISGIPGSPGFPGAKGDFGSPGFPGNAGLPGG
KGLKGDIGLPGVPGFPGPKGDSGIPGPSGLPGDPGDGGPAGPPGDPGFAPAPIVLKGERG
SPGPSGLPGGRGATGPPGLEGLSGQPGQPGDSGPEGPPGFSGAPGRKGDPGPAGQPGERG
YPGPPGSDGLQGPPGPSGSASVAHGFLITRHSQGEDVPLCPEGTSLIYDGYSLLYVQGNE
RAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPTPMPMTMAPITGEG
IKPYISRCAVCEAPAMVIAVHSQTIQIPTCPSYWEPLWIGYSFMMHTSAGAEGSGQALAS
PGSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVDQSEMFRKPQSETLKAGNLRTRVS
RCVVCMKRT
NT seq
5070 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaaacttgaagagtctgcgaaatctcgcggtggggttggtgctcgtaaccctg
tgtatcgtggtccaggagtcggaatcagcggcctgtcatggctgtgcagcgggatcaaag
tgtgactgcagcggggtaaaaggaggcaagggcgagaggggtttcccagggctacagggt
cagccaggcgtaccagggttccccggacctgaggggccaatcggaggcaggggagagaag
ggtggtgacggaccttcagggccatccggtccaaaaggaattaggggacctcctggactg
cccgggttcccaggaacaccaggaattccaggtctcccaggacaggacggtcccccgggc
ccaaggggaactgcaggctgcaacgggaccaagggtgagagaggattccctggaagtcca
ggattccccggactggagggccgatcgggtccacctggtctgccgggacaaaagggagac
ctaggcgatgtcatctccaatgaccgcttcggacagaaaggaggtgtaggcctaccaggt
ttgcctggagtccccggtaacaccggccctgcgggattgtcgggccctgtcggtccacct
ggccccagaggttatgagggtcgttccgggcctcctgggcctcccggtcctaagggtaac
atgggattgaacttccaaggtcccaaaggagacaagggggatccaggcctgcaggggcct
cccggtccacctggacaggtcggggagcagaagagacccaccgagttagagatccagaga
ggagagaaaggtgatcaaggtttacctggtccagccggtgatcctggttattctggtccc
cctggtgtatctggaggttcgaagggagagaaaggagagcctggagaagcaggcaaacgc
ggcaaaccggggaaagatggcgacccaggtcctgctggattccctggtagtaaaggagac
ctaggcggcccaggtctgccaggtcgggatggtgacaggggggacaaaggtgaccgtgga
taccctggacctccgggcgtggtgattaatggtcagacaggagcacgtgtggggccaaaa
ggagagcctggtttccccgggtcatcaggaaggaaaggagacagaggacaacctggtctc
tcaggtcctccaggccaaccaggaaccccaggtaccggaggtgtaggccaacctggttcc
ccaggcttcccaggagagaggggccagaagggagacgagggccagccaggcatctccctc
cctgggcccccaggacgaaatgggacccctgggcttcagggaccaccaggccctcccggg
gccgcaggggtctccacagggggcggtaactgtttaggaggggcccccggcttaccagga
caacaaggagacagagggtttcaaggagagactggacagaaaggtgacaagggagaaacc
tgtgtgaactgtttctcacgtgggaactccatccctggagtaccaggccctcccgggcct
cccgggttcccaggtggaccaggaggaccaggggctaaaggtgacagaggatatccaggt
ggcccagggccctcaggttcttctggtttgcctggtccccagggtgcacctggtttccca
ggagagaagggtgacccaggtgaggctattgctgtggatggggtgaggggcgacaaggga
gacacagggttccccggaccccctggcctgcctggtctggacggaggacctggtcgcaat
ggagttcctggagctcctggacccaaaggaacatctggttctctgttagtgaagggtgag
cgagggcctccaggtgagcccggtctgcagggtctcccaggtgacnagggtggccccgga
tccccaggcttcggcccccaggggccccctggagagaagggtgttcagggcgtctcaggg
agaacgggaacacctggatcacctggcactaaaggtgagccgggtcaaacgatagcagag
aagggtctcccaggacccaggggacaggatggagaccccggtcttcctggaaacccaggc
aaccccggcgggccaggacagcccggcttccccggcttaccaggtgccaagggcgacccc
ggcctctccggaattggactgccaggaccccccggtgctaaaggattcccaggctcatct
ggtgtgccaggtggtcccgggggtccaggaagaccaggagtggacggcctccccggtgag
ccaggtggacctggagctaagggagagccaggattcgggcttccaggtccccagggccct
ccaggtttccctggacccaaaggattacctggacccaaaggagactccggtttccctggc
aaccccggctcgcccggacgttctggcttcgacggtggccctggtgccaaaggtgactct
ggtatccctggtatatccggagcccgtggccctccaggttcgccctccatcggctctcag
ggcatccccggccccattggacccccaggacccatgggctctccaggatactcaggcgcc
aacggtgagaagggagaccccggttctcccggcctggacattccagggttgccaggcgac
agaggaagtcccggtttccccggcaaccccgggggagttggaccacagggtaaccctggt
ggccctggccgagacgggctgcctggcctgcctggtggtaaaggagacatgggtgtgatg
ggagctcctggacctctgggatcccctgggaaccccggagcccccggcttccctggacct
aaaggtgacgatggtttcccagggcgaccaggtggtcccggcggttcaggtctgaaggga
gacaggggagagccgggtatcgcgggactcccaggccccagcattcctccccaggaactg
aagggtgggaagggagaaccaggagcaccaggtttaggaggactaccaggtcaaaagggt
atccctggtctccctggagacgctggtataccaggacaggacggacgacctggtttgcca
ggacctcaaggtcccaaaggagacgcaggtatccctggaggatcaggctcaccaggagcc
ccaggagctaaaggcaacatgggagagatgggcttcccaggacccacaggggcgaaagga
actccgggtcaatcaggtcggtcgggtggacccggtagttcaggagcatcagggttccct
ggagctaagggagagcccggttcccctggctttggttccccaggagctacaggtcccaag
ggtgagcccggtcagtcaggattccccggacaaaacggagtaaaaggaactcccggaaca
ccaggtcttccagggtttcctggcggccctggcgccaaaggtgaccccggcctcccagga
ttccaaggttctcccgggattcccgggcctaagggtctggatggtatccccggtaacccc
ggtctcagcggaccacccggtcgaccgggagagaatggccgtgccggatcacctgggttc
ccaggggacaagggtcaggcgggtcgtgacggaatccctggaccagcgggagtcaaagga
gacccaggtcttcctggttttggtggccccggttctcctggtctcccaggattaccaggt
gctaagggagatcttggcgcccctggttcttccggtagccctggcttccctggtcagaag
ggagagatgggtttctctggcctgcctgggtcccctggcagcgttgggccccctggcgca
ccaggtgtagccctccagggtcccaaaggtaacgccggcccccccggaccccctggaaga
ggaggtcccgaaggtcctccaggtcctcctggctccgaaggtccccgtggccctgtcggc
agcggagggaccaaaggtgagaagggaatttccggaattcctggatcgcctggtttcccc
ggagcgaagggagatttcggatcgcccggattcccgggtaatgctggccttcctggtggc
aaagggttgaagggagacatcggactgcctggagttcccggattcccaggaccaaaggga
gattctggaatccctggaccatctggtctccctggagaccccggagatggtggccctgct
ggacccccaggtgacccaggttttgctccagcccctatcgtgctgaagggagagcgtggc
tcccccggcccttcaggtctaccaggcggccgtggtgccacaggaccccccgggctggag
ggactctcaggtcaacccggtcagccaggagactccggtcctgagggacccccaggattc
agtggagcccccggccgcaagggagacccaggacccgccggacagccaggtgagcgtgga
tatcccggtccccctggttcagatggcctgcagggccccccaggtccatctggatctgcc
tctgtggcgcacggcttcctgatcaccagacacagccagggcgaggacgtccccctctgc
ccagagggcaccagcctcatctacgacggctactctctgctctacgtacagggcaacgag
agggcacacggacaggacctgggaactgctggtagttgcctgcgtcggttcagcaccatg
ccattcatgttctgtaacatcaacaacgtgtgtaactttgcctcccgtaacgactactcc
tattggctgtccacacccacgcctatgcccatgactatggcccccatcaccggagagggc
atcaaaccttacatcagcaggtgtgcggtgtgtgaggcccctgccatggtgatagctgta
cacagtcagaccattcagatccccacctgccccagctactgggaaccactgtggattgga
tactccttcatgatgcacactagtgctggtgctgagggttcgggtcaggctctggcctcc
cctggctcctgtctagaggaattccggagcgctcccttcatcgagtgccacgggcgggga
acctgcaactactacggcaactcctacagcttctggctggccaccgtcgaccaatcagaa
atgttcaggaagccacagtcggagacgctgaaagcaggtaacctgcggacgcgcgtcagc
cgctgtgtggtctgtatgaagaggacgtaa
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