Oncorhynchus gorbuscha (pink salmon): 124013772
Help
Entry
124013772 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 2-like
KO
K14327
regulator of nonsense transcripts 2
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124013772
03015 mRNA surveillance pathway
124013772
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124013772
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124013772
mRNA cycle factors
P-body specific factors
124013772
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
124013772
NCBI-ProteinID:
XP_046184232
LinkDB
All DBs
Position
LG25:16824169..16844343
Genome browser
AA seq
1276 aa
AA seq
DB search
MLAEGKRLLNMDEKEVSSFSNKEKDREGDRRPTSSRDKVKDEAKMSGKKDVGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKLKAEEEQRKKEEDEKKQQEEQERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRIRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKNIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKGKDKEEAAGKEAKEAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKL
VRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFRFHIRKKDQINIETKN
KTVRFIGELAKFKLFSKTDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRSPDSHLRT
SVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLYKDLS
KVTTEKVLRQMRKLPWQDPESKGYLICCMVNIWNIKYNSIHCVANLLAGLVAYQEDVGIH
VVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFGVNPD
GSPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVEVWSA
EHQFPIDIDYMISDTLELLRPKMKLCISLEDSTRHVTELEREFLVKLGLAMDGQKDGRPS
SAMGSEGEALDEDDEDDDEEGGADTEEQSGNESEMNELEEEEGSENEEEEREEEEEENTD
YLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAVKVHQ
LDVAIPLQLKSQLKKGPGGPICSGEGDGGISDTMQFVMLTRKGNKQQFKILNVPLSSHLA
ANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPRYQHP
KGAPNADLIFKTGGRR
NT seq
3831 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctgagggcaagagattattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagacagagagggtgatagacggcccacctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatgtcggtaaggccgcagaggaaaagaggaga
agactcgaggaggacaaaagaaagaaggaagaaaaggagcggaaacggaaagaagaggag
aaactgaaggcagaggaggagcagaggaagaaggaggaagatgagaagaagcagcaggag
gagcaggagaggaaagttcaggaggaggaggccaagagacagcgtgaagaggaggcagct
caactcaaggagaaggaagagggtcaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagctgcgcatccgcaaccagaacgcccacgagggccgtcccgaggaaacc
ttctttagccgccttgactccagcttgaagaagaatacggccttcgtcaagaagctgcgc
acgctcactgagcagcagcgtgaagccctctccaatgacttcggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctcggtggtggaggccaagctgaagatctctgatgtg
ggctgcgccgtgcacctatgctccctctttcaccaacgctacgctgaatttgccccattg
ctcctccaagcctggaagaggcactttgaggcgcgcaaggaggagaaggcacccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagcttaccatcgtgggcctgtttacg
gacaaggagggcctttcgctcatctacgagcagctgaagaacatcatcgggacagaccgc
gagacacacacgcatgtgtcggtggtcatcagcttctgtaagcactgcggggacgacatc
gcgggcctggtgcctcgcaaagtgaaggctgcacgggagaagtttggtctggccttccct
cccagtgagatcatcaacacggagaagcagcagcccttccagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagttgcagaacatcgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacagacacaagcagtat
gaggagtttgctacatcctaccagaagttgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagaacttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctatgagaacatggtggacctgaaggcctttgtcccc
gccatcctgttcaaagataacgagaagggcaaggacaaagaagaggctgctggtaaagag
gctaaagaggctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaggcagagcttgcc
aaaaaactattggacgagcaagaacaagaggatgaggaggcaagcaccgggtcccacctg
aagctcatcgtggacgctttcatccagcagcttcccaactgcgtcaacagagacctcata
gacaaggctgccatggatttctgcatgaacatgaacaccaagtcaaacaggaggaagctg
gtccgggctctcttcaccgttcccagacaaaggttggatctgctgcccttttactcccgt
ctggtggccacccttcacccctgcatgtcagatgtggccgatgacctgtgctccatactc
aaaggagacttcaggttccatatccggaagaaggaccagatcaacatcgaaaccaaaaat
aaaactgtacggtttatcggggagctggcgaagttcaagctcttctctaaaacggacact
ctgcattgtctgaagatgctgctgtcagacttctcccaccaccacatagagatggcctgc
actctgctggaaaccagtggacgcttcctcttccgatcccccgactcccacctccggacc
agcgtccttctggagcaaatgatgcgtaagaagcaggcgcagcacctggatgctcgctac
gtgaccatggtggagaatgcctactactactgcaaccctccgcccatggagaagactgtc
aggaagaagaggcccccgctgcaggagtacatccgcaaactgctctacaaggacctctcc
aaggtcaccacggagaaggtgttgaggcagatgcgtaaactcccctggcaggacccagag
tctaaaggctacctgatctgttgcatggtcaacatctggaacatcaagtacaacagcatt
cactgtgtggccaacctgctggccggcctagtggcctaccaggaggacgtgggcatccac
gtggtggatggggtcctggaggacatccgcctgggaatggaggtgaaccagcccaagttc
aaccagcgtcggatcagcagtgccaagtttctgggggagctctacaactaccgcatggtg
gagtcagcggtcatcttccgcaccctcttctccttcatctcgttcggcgtgaacccggac
ggcagccccagccccctggacccccccgagcacctgttccgcatccgcatggtctgcacc
ctgcttgacacctgcggacagtactttgaccgcggctccagcaagaggaagctggactgc
ttcctcatctacttccagaggtatatctggtggaagaagagtgtggaggtgtggagtgcg
gaacaccagttccccatcgacattgactacatgatcagtgacaccctggagcttctccgg
cccaagatgaagctctgcatctccctggaagactccacacgacacgtcaccgagttggag
agggagttccttgttaaactgggactggccatggatggacagaaggacggccggccctcc
agtgccatggggagtgaaggcgaggctctagacgaggatgacgaggatgacgacgaagag
ggaggggcggacacagaggaacagtctggcaatgagagcgagatgaacgagctagaggaa
gaagaagggtctgagaatgaggaagaggagcgggaggaagaggaggaggagaacactgac
tatctgaccgactccaacaaggagaacgagacggacgaggagaacaatgaggtgaccatc
cgtggtggcggtctgaagcatgtggcatgtgctgaggatgaggacttcatccaggctctg
gacaagatgatgctggagaacctgcagcagcggagtggggaggcggtgaaggtgcaccag
ttggacgtggccatccccctgcagctgaagagccagctgaagaaaggccctggaggaccc
atctgctctggagagggagacggaggcatctcagacaccatgcagtttgtcatgctcacg
cgcaagggcaacaaacagcagtttaagatcctgaacgtgcctttatcctcccacctggct
gccaaccacttcaaccagcagcaggcagagcaggaggagaggatgaggatgaagaagctc
actctggacatcaacgagagacaggagcaagaagactaccaagaaatgatggcgtctctg
gcccagcggcccgctcctgccaacaccaaccgggagcggcgcccgcgctaccaacacccc
aaaggggcacccaacgccgacctcatcttcaagaccggaggaagacgctag
DBGET
integrated database retrieval system
