Oncorhynchus gorbuscha (pink salmon): 124015555
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Entry
124015555 CDS
T07892
Symbol
slx4
Name
(RefSeq) LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
124015555 (slx4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
124015555 (slx4)
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124015555 (slx4)
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
124015555 (slx4)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
124015555 (slx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-met
zf-C2H2_jaz
Zn-C2H2_12
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
124015555
NCBI-ProteinID:
XP_046186797
LinkDB
All DBs
Position
LG26:1912428..1922868
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AA seq
2011 aa
AA seq
DB search
MDDSDQDFVDLCSKLLKRVRRKAGVTEKRSVAEPSSQDTVKDINTKRVTTRRKKKDVGPS
SKGALGNNSEHVSSISTTCDEPNRLPSNTDKSKQAVVNGGIELGVGENGSSVAVDVAGAQ
PEDRGMGVKEKVLHRMQQFKRVNPQKLVHGERNQPAATGSESDSAAPHPLPDNEVPSTSA
SSPLPLDPQVDDSDEALALRLQEELDREAQAVAQGSVVDLEQGGLFFCQLCQKDLSAMSP
TGRTQHINRCLDESEDSAAPAPPAPSVPECPICGKRFKSQISRAAHLKRCSSTMGVAPAM
LLQAVQRQVAEGLTNSTANQPPQAGGSKRKGSTDPSLPGRKKPRKKPRGLDEDTMVAMAL
SHSLLEQEKEMEQEMQRELQREREGGQQLPAVLPHISLSPLKWRAEPSKTSKGRGKRKKG
APPRPPPLLLVQDSETALRRLQERVAGLLLRTRAPSPPTPTRCPSSLPSCRTGAGPLWQK
SALRDGGPKVISEFYTPELREFIQPWVSVKMDMVFPTKAMPGSSTNLSSTESISMTKQSI
PSSQQPVSSTQAAPSSLLSTPGTGHLPVGSQTLCDLMELADEGMTLTQWGSSTPGPTRDK
ENTATDFHLSGFVPESTDEPPDLCLSGFIPESSRNTESHQMRSLPQSTNTNRSRQKSVAL
SKLASDLTSMVNNPQFSDVQLQVDSGEVYFTHSFMLYARCPLLAQMVHDSGFGVQEDGMP
SAQRVLLSEVPGQAVYTLLQYLYTAHCPLTHTLLPHVQELAARFNLEELQQLCQLYPAQT
DLHRGVEGQGGQWGDYPAQEHQSGGEEEHQDQVFMELLRSMWNEEEVEEDEDRGEEGGIA
MEEEGRGDGVTIEDGETNEERVNEEEMEEIYEFAATQRKRDEGKESEKEESEEEEEGGVT
FFTETEEEQEAPIQAHSLAEHSDKGELTCMMSPQTKPPSLEEDMAIGDIDTDRGNPNRIK
ADLNKSEGRDLERSRTATVESDRTKQFESNVTSSRSVGEVSTTKSPHSSPIDDQELNASL
DRSYSRLFSDSWGVYETQEEPHTSPPTQPSCTPNPTGLSRNPPCSQPPRTMVVEGARQPE
LTSPPPPSSCSQPTRVRVDGGTRQTAIPTLQYSAIEIIDLSISPPLVPGVSALPVPGLSP
GEVTDTGARVRMKGVVGRGKVPVCKEILQEKVPSSPEDLKRESYGPYSISVPVSPPHSTK
EEPELIVLSDSSEEMEVGDLGPTSPSPPPPNRLSQNHQGYTRITTQSNTEPKKPTSITQS
DTEPKKSSSKEKETIGGFVRDPSVSPSDQGLDPDPPGYKPGSNPGSAGSTSLMDCSAEMS
WLIPATPPLPSRRTSSTQTFSSMRRTQLFPKANSSSSSSAASVFSSPTLPYRPSRQTSHP
PRVSTHSAQTGSSISRQKSDSRGLRHSSLGLDHDDLSSQIYNSGSGSTVPSKSQPKRSCL
PRLTPSLSVIPPPDPSTKGTPLHNIPQPYSSTPLYSGLPKPSAPSLASPLLRDGEGDNGN
RQRGRGLGISGSPWKRGGEGSLGLSLSDPSSSPHKESLTQPRENSGSPGQRRPSSESKYF
HSPGDSETGGEKERGVREESDEIMKMEELERSVVKEEEQEEEQGEDMERSSNSFQQSFLG
MDEPPMAFDDSWGLNAGGGDMDGERSQALCFSLRPESSGGGTSPPRQGRRDGEIAGTSST
FTPSPLPKAYTTPSPPLPNTTTPQANPEINASLLDAEIWDDWGQEEDEALPLSQRVNPVA
LAQRVAQLKTPVAPRRKGQQGPLVPITPMPSYSDMDTPDLKNKLNRFGVRPLPKRQMILK
LKEIHQYTHQVVSSESEDEAPSLGRPRAVRPPPTTMEPTRKPVSCAQVGGFKEPGGKAAP
TVSRLKLPGEEEDMEPLSASQGSNTSSTAPSEDSERSNPEQCLSDDSDNDNITASQSASK
LQDKLVAVRHFIQSDPDLYGQILQYQPLVLSDLQARLQAAGIQLGAAKLLDYLDSQCITF
TTAKPGLRGGRKRRGKGATRARGRGRKERGS
NT seq
6036 nt
NT seq
+upstream
nt +downstream
nt
atggacgactctgatcaagacttcgtggacctctgctctaagttgctcaaacgagtccgc
agaaaagcaggcgtaaccgagaagagaagtgttgcagagccctcgtcccaggacactgtg
aaagacataaacacaaaaagagtgacgactaggaggaagaagaaagatgttggcccaagt
tcaaagggagctttgggtaacaactccgaacacgtttcctccatctctaccacttgtgat
gaaccaaaccgacttccctccaatacagacaaatctaaacaagcagtggtcaatggaggt
attgaacttggtgtaggagagaatgggtcatcagtggctgtggatgttgctggggctcaa
cctgaggataggggaatgggggtgaaggagaaagtgctacacaggatgcagcagttcaag
agagtcaatccacagaagctggtgcatggtgagaggaatcagcctgcagcaacagggagt
gaaagtgacagtgctgctccgcatccactgccagataatgaagttccatccacctccgcc
tcttctcccctaccactggacccccaggtggatgactcggatgaggccctggccctgcgt
ctacaggaggagctggacagggaggcccaggctgtggcccagggtagtgtagtggacctg
gagcagggaggcctgttcttctgtcagctctgccagaaagacctgtctgccatgagcccc
acaggacgcacccaacacatcaacaggtgtctagacgagagtgaggacagtgctgcccct
gcccctcccgctcccagcgtcccagaatgtcccatctgtggtaaacggttcaagtcccag
attagtcgcgcggcccacctgaagcgttgctcctccacgatgggcgtggctcctgccatg
ctgctgcaggctgtacagagacaagttgcagagggcctgactaacagcaccgccaaccaa
cctccgcaggccggaggttccaagcgtaaaggctccacagaccccagcctcccaggcagg
aagaagcccagaaagaagccccgtggcctggatgaagacaccatggtggccatggccctg
tcccactccctactggagcaggagaaagagatggagcaggagatgcagagagagttacag
agggagagagaaggtggtcagcagctcccagccgtcctccctcacatttctctgtcacca
ttgaagtggagagctgaaccaagtaagacgagtaaggggcgtggcaagaggaaaaagggt
gcaccccctcgcccccctcccctcctcctggtccaggactcggagacagccctgaggcga
ctacaggagcgcgtggctggcctcctcctccgtacccgcgccccctcgcctcccaccccc
acacgctgccccagctccctgccctcctgcagaacgggtgctggccccctctggcagaag
agtgcgctgcgggacggagggccgaaggtcatctctgagttctacaccccagagctcaga
gaatttatacagccttgggtgtctgtaaagatggatatggtgtttcccaccaaggccatg
cctggatcctccaccaacctttcctcaacagaaagcatctctatgaccaagcaatctatc
ccttcctcccaacaaccagtctcctccacccaggcagccccctcttcgctcctttccacc
ccagggacagggcaccttccagtgggcagccagactctgtgtgacctgatggagctggct
gatgagggaatgaccctcacacagtggggctcttctaccccaggacctaccagagacaaa
gagaacactgctacagacttccacctgagtggctttgttcctgagagcacagacgaaccc
cctgacctgtgtctcagtggcttcatcccagagagcagcagaaacactgaaagccatcag
atgagatctcttcctcaaagcacaaataccaacaggagcagacagaaatcagtggcgctg
tccaagctggcctcagacctcaccagtatggtgaacaacccccagttcagtgatgtccag
ctacaggtggacagtggggaggtgtacttcacccattcattcatgctgtatgctcgatgc
cccctgctggcgcagatggtccatgacagtggattcggggtgcaggaggatggcatgccc
tcagcccagagggtgttgttgagtgaggtaccaggccaggcggtatataccctgctccag
tacctctacacagctcactgccccctcacacacaccctactgccacatgttcaggagctg
gcagccaggttcaacctggaggagctgcagcagctgtgccagctctatccagctcagaca
gacctccacagaggtgtagagggacaggggggtcagtggggagattacccagcccaggag
caccaatctgggggagaggaggagcaccaagaccaggtcttcatggagctcctccgctcc
atgtggaatgaagaagaggttgaggaagatgaggacagaggagaggaaggagggattgcg
atggaggaggaggggcgaggggatggcgtgacgatagaagatggagagacgaacgaagaa
agggtgaacgaagaagagatggaggagatatatgagtttgctgccactcagagaaagagg
gatgaaggaaaagagagcgaaaaggaagaatcagaggaggaggaggagggaggagtgaca
tttttcacagagacagaagaagagcaggaggctccaatccaagctcactcattggctgaa
cactcagataagggtgaattaacatgcatgatgtcccctcaaacaaaacctcccagttta
gaggaagacatggctattggtgacatcgacacagaccgggggaatccaaataggataaaa
gctgatctcaacaaatcagaaggtagagatctagaacgttctagaacagccaccgtggag
tcagacagaacaaaacaatttgaatcaaacgtcacaagctcaagaagtgttggagaggta
tcaacgacgaaaagcccccactccagtccgattgacgatcaagaactaaacgctagtcta
gaccgtagctacagccgcctcttctctgactcttggggggtctatgagacgcaggaggag
ccccacacctccccaccaacacaaccatcctgcactcccaaccccacagggctatccaga
aaccctccctgctcccagccccccaggaccatggtagtggagggtgcgagacagccagaa
ctcacctccccacccccaccgtcctcctgctcccagcccacaagggtgagggtcgatggg
ggtacgagacagacagcgatccctaccctccagtactcagccattgaaatcattgacctc
tccatcagtcctcctctggtccctggtgtatccgccctacctgttcctggtttgtcccca
ggggaagtgactgacaccggggcacgagttaggatgaagggagtggtgggaagagggaaa
gttcctgtgtgtaaggagatactccaagagaaggtaccgtctagtccagaggacttaaag
agagagagttatggtccgtatagtatttctgtacccgtctctcctcctcacagtaccaaa
gaagaacctgagcttatagttctgtctgactctagtgaagagatggaggtaggggatcta
ggacctaccagcccctctccaccaccccctaatcgtctctcccagaaccaccaaggctac
acccgaatcacaactcaatccaacacagaacccaagaaacccacctcgataacccaatca
gacacagaacctaagaaatccagctcgaaggagaaagagactattggtggttttgtgagg
gatccttctgtctcaccttcagatcaaggcttagatccagatcctccaggttataaacca
ggttctaacccaggttctgctggttctactagtctcatggactgttctgcagagatgtct
tggctcatcccggccactccgcccctgccgtccaggaggacgagctctacccagaccttt
agtagcatgcgtcgcactcagctctttcctaaggccaactcttcttcctcctcttctgca
gcgtcagttttctcctctcccaccctcccttacaggcctagccgccagacctcacaccca
cccagggtttctacacattctgcccagacagggtcctctatttctaggcagaaatcagac
agcagagggcttcggcactccagcttgggtctcgaccatgacgacctctcttcccagata
tacaacagtggttctggatccacagtcccctccaagtcccaaccaaaacgctcctgccta
ccccgcctgaccccctctctctccgtcatccccccaccagacccctccaccaagggtact
cctctccacaacatcccccagccatacagctccactcccctttattcaggtctacccaag
ccctctgctccgtctctggcctcccctcttctgagagacggggagggggacaacggaaac
aggcagagagggagggggctggggatctctgggagcccatggaagagagggggagagggg
tctctgggcctatccctctcggacccatcctcatccccacataaggagtcccttacccaa
ccgagagagaacagcggctcccccggacaacgccgaccatccagtgagtctaaatacttc
cacagcccaggagacagcgagacggggggagagaaagagaggggggtgagagaggaatcg
gatgagattatgaaaatggaggaactggaaaggagtgtagtgaaagaggaagagcaggag
gaagagcaaggagaagatatggagaggtccagtaacagctttcaacagagcttcctcggg
atggacgagccacccatggccttcgatgactcctggggcctaaacgcaggaggaggggac
atggacggagaacgatcccaggcattgtgcttcagtctgaggccagagagcagcggcggt
gggactagtcctccaagacagggccggagagatggagagattgcaggaacatcctctact
tttaccccctctcctcttcctaaagcctacaccaccccctctccacctctaccaaacacc
actacaccccaggccaacccagagatcaacgctagcctcctggacgctgagatctgggac
gactgggggcaggaagaggatgaggctcttcctctctctcagagggtgaatcctgtagct
ctggctcagagagtggcccagctcaagactccagtggccccccgtaggaaaggccagcag
ggccccctggtcccaatcacccccatgcccagctactctgacatggacacacctgacctc
aagaacaagctcaacagattcggtgtgcgtcccttacccaagcgccagatgatcctgaag
ctcaaggagatccaccagtacacccaccaggtcgtcagctcagagtccgaggacgaggca
ccctccctgggtcgccccagagccgtcaggcccccacccaccaccatggagcccaccaga
aagccagtgtcctgtgcccaggttggggggtttaaagagcctggtggaaaagcagcacct
acagtctccaggttgaaactgcctggtgaggaggaggacatggagcctctctctgcctct
cagggatccaatacgtcctccacagcacccagtgaagactctgagaggtctaatccagag
cagtgcctctctgacgactcggataacgacaacatcactgcctcgcagtctgcctccaag
ctccaggacaagctcgtcgctgtccgtcatttcatccagtcagaccctgacctctacggg
cagatcctccaataccagcccctggtcctgtcagacctccaggccagactccaggccgca
ggtatccagctgggggccgccaagctactagactacctggactcccagtgcattacgttt
accacagccaagcctggactgaggggaggaagaaagagaagagggaagggggcgaccagg
gccagagggaggggaaggaaggagaggggcagctaa
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integrated database retrieval system
