Oncorhynchus gorbuscha (pink salmon): 124016349 Help Entry 124016349         CDS       T07892                                  Name (RefSeq) collagen alpha-1(II) chain-like   KO K19719   collagen type II alpha Organism ogo  Oncorhynchus gorbuscha (pink salmon) Pathway ogo04510   Focal adhesion ogo04512   ECM-receptor interaction ogo04518   Integrin signaling Brite KEGG Orthology (KO) [BR:ogo00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     124016349    04518 Integrin signaling     124016349  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     124016349  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:ogo00536]     124016349 Glycosaminoglycan binding proteins [BR:ogo00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    124016349 SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Motif Other DBs NCBI-GeneID:  124016349 NCBI-ProteinID:  XP_046187862 LinkDB All DBs Position LG03:12584873..12669111 Genome browser AA seq 1429 aa AA seqDB search MFSFVDSRTVLLLVATQVVLLAVVKCQEEDRAPGAKGQKGEPGDITDVVGPRGPGGPMGP PGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPSGPNGPPGLGGNFAAQMAGGF DEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAVSLPRSPPGPS GKPGDDGEAGKPGKGGDRGPSGPQGARGFPGTPGLPGIKGHRGYPGLDGLKGEGGAVGSK GESGAPGENGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPSGAPGFP GSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGGAKGSAGAPGIA GAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIGPAGPQGALGPAGEE GKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGGVSGPKGAGGDP GRPGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPMGARGQPGVMGFPGPK GANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGQPGPSGFQGLP GPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTPGTD GPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEGASGKDGSRGLT GPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAGPPGSDGQPGVK GEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPSGATGFLWSCISQYKY NHIHNTTQTLTSSGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGAAGSPGEKGD AGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGSPGGSGDRGP PGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPAGAPGSPGANGSPGP VGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTGL QGLPGPPGQAGDQGASGPAGPSGSRGPPGPIGPHGKDGSNGMPGPIGPPGPRGRSGETGP SGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDAT LKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNME TGESCVYPKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQMTFL RLLSTEASQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYTVMQDGC TKHTGAWGKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL NT seq 4290 nt NT seq  +upstreamnt  +downstreamnt atgttcagctttgtggattcgaggactgtactgctacttgtagcaacccaagtcgttcta ttagctgttgtcaaatgtcaggaagaagaccgggccccgggagctaagggtcagaagggg gaaccaggagatatcacagatgtcgtaggaccaagaggacctggaggccctatgggcccc ccaggagagcagggaccacgcggagacagaggagacaaaggcgataagggcagtcccggg ccccgtggcagagatggcgagcctggtacccctggtaaccccggcccccccggaccctca ggacctaatggacctcccggccttggaggaaactttgctgctcagatggctggaggattt gacgagaaggctggcggagcacagatgggcgtgatgcaaggaccaatgggccctatgggt cctcgagggccacctggcccctctggagctcctggtccacaaggtttccaaggcaacccc ggagaggctggagagcccggatcagctgtaagtcttcctcgttctccacctggaccctct ggtaaacctggagatgacggtgaggctggcaaacccggcaaaggtggtgatcgtggacct tctggtcctcagggagctcgtggattcccaggaactcccggtctgcctggaatcaaaggg catagaggttatccaggtcttgatggactcaagggagagggtggagctgttggttctaag ggggagtctggtgcgcccggtgagaatggcgctcccggacccatgggaccacgtggtctg cctggtgagagaggtcgccccggtccctctggagctgctggtgctcgtggtaatgatggt ctgcccggccctgctggtcctcctggcccagttggtccatctggtgctccaggcttcccc ggttctccaggttctaagggagaagctggccccaccggtgctcgtggacctgagggcgcc cagggaccacgtggagagtcaggaacccccggatctcccggacccgccggcgcttctggt aaccctggtactgatggtattggtggagctaaaggatcagctggtgctcctggtatcgct ggcgcgcctggcttcccgggaccccgtggccctccaggaccccagggagccactgggcct ctcggaccaaagggaacatctggtgaccctggtatcccaggtttcaagggtgaggctgga cccaagggagagattggacccgcgggtccccaaggagcccttggccctgcaggagaggag gggaagaggggacccagaggagagcccggcgctgctggacctctcggacctcccggagag agaggcgcccccggcaaccgtggtttcccaggtcaggatggtctggctggtcccaaggga gcccctggcgagcgtggagtcggcggcgtgtctggccctaagggagccggcggtgaccct ggtcgccctggcgagcccggtcttcctggtgcaagaggtcttactggtcgtcccggtgat gcaggtcctcaaggaaaagttggacccggtggtgctgctggtgaggatggtcgccctggt ccccctggccctatgggagcccgcggtcagcctggcgtgatgggattccccggacccaag ggagccaacggcgaacctggcaagggcggagagaaaggattgctcggtgcgccaggtctg agaggtcttcctggtaaggatggtgagaccggagctgctggaccccctggccctgctggc cctgctggagagagaggagagcaaggacaacctggaccttctggcttccagggtctgcca ggacctcccggcccccctggtgagggtggcaagcccggtgacatgggagttccaggagag ggtggagctgctggtgccactggacccagaggtgagcgtggtttcccaggagagagagga ggtgctgggcctcaggggctgcagggaccccgtggtcttcctggaactcctggaactgac ggacctaagggcgcgatcggaccaggtggtgcatcgggtgcccagggaccccccggtctg caaggtatgcccggagagagaggagcctcaggcatccccggacctaagggagacagaggt gacaacggagagaagggacctgagggtgcttctggcaaagacggttcaagaggtttgact ggtccaattggtcctcctggcccagctggtcccaatggagagaagggtgaatctggtccc tctggaccttccggtgctgctggtgcccgaggtgctcctggtgacaggggtgagactgga cctcctgggcctgctggcttcgctgggcctcctggatctgatggtcagcccggagtcaag ggagagcagggagagggtggacagaagggagacgctggtgcccctggaccacagggaccc tccggagctcctggaccttccggacctactggcgtttctggacctaaaggtgctcgcggt gctcagggaccctctggtgccactggtttcctctggagctgcatctcccaatataagtac aaccacattcataatacaactcaaacactcacatcttctggaaaccctggtgctgctggt ccctctggccctgctggtaaagatggccctaaaggtgtgcgtggagacggtggaccccca ggcagacagggagatgctgggctgcgtggagccgctggatcccctggagagaagggagat gctggagaggatggtccttctggtcctgatggtccttcaggcccttcaggtctggctgga cagcgtggtattgttggtcttccaggacaacgtggagagagaggtttccctggcctgcca ggaccctctggtgagcctggtaaacaaggatctcctggtggaagcggagaccgtgggccc cctggccctgtggggccccctggactgactggacccgcaggagagcccggtagagagggc aacgctggttctgatggaccccctggtagagatggagccactggaatcaagggtgaccgt ggtaacaccggtcctgctggtgctcctggctccccaggggctaatggttcccccggccct gtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggaccagctgga cctgccgggcctgctggagccagaggaatggctggaccccaaggaccccgtggagacaag ggtgaggctggagagggtggtgagagaggacagaaaggacacagaggattcactggtctg cagggtctgcctggaccgcccggtcaagctggagaccagggtgcatctggacctgccgga ccaagtggatcaagaggacctcccggacctattggtccacatggaaaagatggttccaac ggtatgcccggccccatcggaccccccggaccccgtggtcgctctggagagactggtccc tctggcccccctggaaactctggtccccctggtcctcctggtcctcccggccctggtatc gacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgaggtac atgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgccacg ctcaagtctctcaacaaccagattgagaacatccgctccccagagggctccaagaagaac cctgcacgtacttgcagagacctgaagctgtgccacccagactggaagagtggagagtac tggatcgaccctaaccagggctgcaccatagacgccatcaaggtctactgtaacatggag accggagagtcctgcgtctaccccaagcccgccagcatccccaagaagaactggtggtcc agcaagagcaaggctgccaaacacgtctggttcggagagaccatgaacggaggattccac ttcagctatggcgatgacagcctggctgccaacacggccagcatccagatgaccttcctg cggctgctgtccactgaggctagccagaacctcacctaccactgcaagaacagtgtggct tacatggacggagccacgggcaacctgaagaaggccgtgctgctccagggatccaacgat gtggagatcagggccgagggaaacagccgcttcacctacaccgttatgcaggacggctgc acgaaacacacaggagcatggggcaagacagtgattgactacagatcacagaagaccagc cggctgcccatcgtggacattgctcccatggatattggaggagcggaccaagagtttgga gtcgacgtcggtgcagtctgcttcttgtaa

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