KEGG   Oncorhynchus gorbuscha (pink salmon): 124018430
Entry
124018430         CDS       T07892                                 
Symbol
poc1a
Name
(RefSeq) POC1 centriolar protein homolog A
  KO
K16482  centriolar protein POC1
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ogo03036]
    124018430 (poc1a)
  09183 Protein families: signaling and cellular processes
   03037 Cilium and associated proteins [BR:ogo03037]
    124018430 (poc1a)
Chromosome and associated proteins [BR:ogo03036]
 Eukaryotic type
  Centrosome formation proteins
   Centriole proteins
    124018430 (poc1a)
Cilium and associated proteins [BR:ogo03037]
 Primary cilia and associated proteins
  Other primary cilia associated proteins
   124018430 (poc1a)
SSDB
Motif
Pfam: WD40 Beta-prop_EML_2 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_EML Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_WDR75_1st Beta-prop_SCAP WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_WDR19_1st Beta-prop_Nup120_160 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_NWD2_C eIF2A Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_DCAF4 Beta-prop_WDR75_2nd RMC1_N Beta-prop_NUP159_NUP214 Beta-prop_IP5PC_F PROPPIN Beta-prop_DCAF12 Nucleoporin_N Beta-prop_RIG_1st
Other DBs
NCBI-GeneID: 124018430
NCBI-ProteinID: XP_046189702
LinkDB
Position
LG03:4783336..4879221
AA seq 482 aa
MTSALDDPTLERHFKGHRDTITSVDFNCNMKQIATGSMDSCLMIWNLKPQMRAYRFVGHK
DAVTSVQFSPSGHLVASASRDKTVRLWVPSVKGESTAFRAHTGTVRSVSFSGDGQTLVTA
SDDKTLKVWTVHRQKFLFSLNQHINWVRCAKFSPDGRLIVSASDDKSIKIWDKTSQECIH
SFYEHGGYVNYADFHPSGTCIAAACTDNTVKVWDIRTNKLLQHYQVHSGVVNGLSFHPSG
NYLITASNDSTMKILDLLEGRLLYTLHGHQGPVTCVTFSRTGDYFASGGSDEQAMVWKTN
FKSTDYGEVLQQTETCVDLGGGGGAAAGGGAAGGGGGAAGGGGAAFPGDSRKFLHHRQES
SESELCNSQGRGLRTEVRSRSGSVTRSLSSRPTQTSRAPRARPPTVELTRTEPPPQTEGM
VPAGLASTLEHIVAQLDVLTQTVAILEQRLTLTEDKLKECIDNQHQINLQLHRREPDLQP
RD
NT seq 1449 nt   +upstreamnt  +downstreamnt
atgacttccgcattggatgacccaaccctggagaggcacttcaagggccacagagacacc
ataacaagcgttgacttcaactgtaacatgaaacaaattgcgaccggctccatggactcc
tgtctcatgatctggaacttgaagccccaaatgagagcctatcggttcgtgggacataaa
gacgctgtgacgtcagtccagttctctccctccggacacctggtggcctcagcttccagg
gacaagactgtccgcctctgggtgcccagtgttaagggcgagtccacggcgttccgagcc
cacaccggaacggtgcgtagtgtcagtttctccggtgatggacagaccttggtcaccgcg
tccgacgacaaaactctcaaagtctggaccgttcaccgacagaagttccttttctctctc
aaccaacacatcaactgggtccgctgtgccaagttttcaccagacggcaggttgatagta
tcggccagtgacgacaagagcattaagatctgggacaagacgagtcaggagtgtattcac
tcattctatgaacatggagggtatgtgaactatgccgacttccatcccagtggaacatgc
attgctgctgcttgcacagacaacactgtcaaggtctgggacatcaggaccaacaaatta
ctgcagcattaccaagttcacagtggagtggtgaacggtctctccttccatccatctggt
aactacctgataacagcctctaatgactccactatgaagatactggacctgctggaggga
cggctgctctacacactgcacggacaccagggcccagtcacatgtgtcacgttctctagg
accggagactactttgcctcaggaggatctgatgaacaggctatggtgtggaagactaat
tttaaatcaactgactacggagaagttctacagcagacggagacctgcgtcgaccttgga
ggaggaggaggagcagctgcaggaggaggagctgcaggaggaggaggaggagctgcagga
ggaggaggagcagctttccctggagactccaggaagttcttgcaccataggcaggagtca
tctgagtcagagctgtgtaacagccaggggcggggcttacgtacggaggtgaggagtagg
agtggcagcgtcacccggagcctgtcttccagacccacccagacctccagggcccccaga
gccaggccccccactgtcgagctgacacgcaccgagcctccgccccagacagaaggcatg
gtgcctgctggtctggccagcaccctggaacacatagtggctcaactagatgttctcaca
cagactgtggccatcctagaacagaggctgactctgacagaggacaagctgaaggagtgt
attgacaaccagcatcagatcaacctgcaactccaccgcagggaaccagacctccaacca
agggattaa

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