Oncorhynchus gorbuscha (pink salmon): 124018718
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Entry
124018718 CDS
T07892
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03022
Basal transcription factors
ogo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124018718
09124 Replication and repair
03420 Nucleotide excision repair
124018718
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124018718
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124018718
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124018718
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124018718
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124018718
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
ResIII
Helicase_C
Helicase_C_3
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
124018718
NCBI-ProteinID:
XP_046190025
LinkDB
All DBs
Position
Unknown
AA seq
702 aa
AA seq
DB search
MGSESQEAIPAAAGKTVDESAIKLDEYGAKDYRLQMLLKNDHGSRPLWVSEEEEVQGSEE
TSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFPEVIQRLLQDSVIRDCRLRTAEGT
DTELITEVVHSKSAISKSLQDNGAGASTSAGAPEGQTPGATQVPEDIFSYYEQMDKEEEE
EEETQTVSFEIRQEMIEELQKRCINMEYPLLAEYDFRNDTVNPDINMDLKATAVLRPYQE
KSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKAQFKMW
STIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSWEAERVMEWMRSQEWGLIILD
EVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLFEANWMELQNNGY
IAKVQCAEVWCPMSPEFYREYVAIKTKRRILLYTMNPNKFRACQFLIKFHERRNDKIMVF
ADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPEAN
VLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYSLVSQDTQEMAYSTKRQRFLV
DQGYSFKVITKMAGMEEDNLMFSSREEQYQLLQKVLAATDLDAEEEVVIGENGRPMFQRR
PGTMSSMSGADDSVYMEYRSRGSRAHLGNNIHPLFKRFRKGP
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgggcagtgagtcccaggaggccatccctgcagcggccggtaaaacggtggatgagtcg
gccatcaagctggacgagtacggggctaaagactaccggctgcagatgttgctgaagaac
gaccacggatcacgacctctctgggtgtctgaggaggaggaggtacaggggtctgaggag
acatctgtaccggacggcatcgtgcagttcattaagctctgcactgtgagctacggcaag
gtgaagctggtgctgaaacacaaccggtactttgtggagagtgcgttcccagaggtgatc
cagcgtcttcttcaggacagtgtgatcagagattgtcgtctccgaaccgcagaggggaca
gacaccgagctcatcactgaggtcgtacacagcaagtcagcgatctctaagtccctccag
gacaacggagcaggggcctccacgtcagcaggggcccctgagggccagacgccaggagcc
acccaggtaccagaggacatattcagctactatgaacagatggacaaggaggaagaggag
gaggaggagacgcagaccgtgtccttcgagatccgacaggagatgattgaagagcttcag
aagaggtgtattaatatggagtatcctctactggctgagtacgacttccgcaacgacacg
gtgaaccctgacatcaacatggacctgaaggccacagctgtactcaggccttaccaggag
aagagcctccgcaagatgtttggtaacggccgagcccgctcgggagtcatcgtactacct
tgtggtgctgggaagtctctagtaggggtaacggcagcctgtacggtccgtaagcgctgc
ctggtcctggggaacagctctgtgtcagtagaacagtggaaggctcagtttaagatgtgg
tcgaccatcgacgactctcagatctgccgcttcacctcagatgccaaggacaagccgatt
ggctgctcggtggccatcagtacatacagcatgttgggacacaccaccaagaggtcttgg
gaggcagagagagtgatggaatggatgaggtcccaggagtggggtctcatcatcctggac
gaggtgcacaccatccctgctaagatgttccgtcgggttctgaccattgtccaggcccac
tgtaagctgggtctgaccgctacgctggtccgagaggacgacaagatcgtcgatctcaac
ttcctgattgggcccaagctgttcgaggctaactggatggagcttcagaacaacggatac
atcgctaaggtccagtgtgccgaggtgtggtgtccgatgtctccggagttttaccgggaa
tacgtggccatcaagacgaagagacgtattctcctctacaccatgaaccccaacaagttc
agagcctgtcagttcctcatcaagttccacgagagacgcaacgacaagatcatggtgttc
gccgacaacgtcttcgctctgaaggagtacgccatccgcctcaacaagccctacatctat
ggccccacctctcagggagagaggatgcagatcctacagaactttaaacacaaccccaag
atcaacaccatcttcatctccaaggtgggcgacacgtcctttgacctcccggaggctaat
gttctgatccagatctcctctcatggaggttctcgcagacaggaggctcagaggctgggc
agggtgctgcgagccaagaaaggtatggtcgcggaggagtataatgcctacttctactcg
ttggtgtctcaggatactcaggagatggcctacagcaccaagagacaaaggttcctagtg
gaccagggatacagcttcaaggtcatcactaaaatggcggggatggaggaggataatctg
atgttctcctccagagaggagcagtatcagcttctccagaaggttctggctgctacagac
ctcgacgcagaggaggaagtggtcatcggagagaatggacggccaatgttccaacggagg
ccaggtaccatgagctccatgtctggggctgatgattctgtctacatggagtatcgctct
agaggcagccgggcccacctgggtaacaacatccacccgctcttcaagcgcttcaggaag
ggcccgtag
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integrated database retrieval system
