Oncorhynchus gorbuscha (pink salmon): 124019216
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Entry
124019216 CDS
T07892
Name
(RefSeq) regulator of nonsense transcripts 2-like isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124019216
03015 mRNA surveillance pathway
124019216
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124019216
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124019216
mRNA cycle factors
P-body specific factors
124019216
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
124019216
NCBI-ProteinID:
XP_046190570
LinkDB
All DBs
Position
Unknown
AA seq
1332 aa
AA seq
DB search
MPAEGKRSLNMDEKEVSSFSNKEKDRDADRRPASSRDKVKDEAKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKQKAEEEQRKKEEDEKKQQEEQERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRVRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQRDALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFGLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQHEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKSKDKEEAAAKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGKDEGIKLGYERGQGNRARAHSWVLRANQLNREQEDEEASTGSHLKLIVDAFI
QQLPNCVNRDLIDKAAMDFCMNMNTKSNRRKLVRALFTVPRQRLDLLPFYSRLVATLHPC
MSDVADDLCSILKGDFRFHIRKKDQINIETKNKTVRFIGELAKFKLFSKTDTLHCLKMLL
SDFSHHHIEMACTLLETSGRFLFRSPDSHLRTSVLLEQMMRKKQAQHLDARYVTMVENAY
YYCNPPPMEKTVRKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPESKGYLICC
MVNIWNVKYNSIHCVANLLAGLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSA
KFLGELYNYRMVESAVIFRTLFSFISFGVNPDGGPSPLDPPEHLFRIRMVCTLLDTCGQY
FDRGSSKRKLDCFLIYFQRYIWWKKSVEVWSAEHQFPIDIDYMISDTLELLRPKMRLCIS
LEDSARQVTELEREFLVKLGLAMDGQKDGRPSSAMGSEGEALDEDDDDDDEEGGADTEEQ
SGNESEMNEPEEEEGSENEEEEREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHV
ACAEDEDFIQALDKMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKGPGGPVCSGEGDA
DISDTMQFVMLTRKGNKQQFKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQ
EQEDYQEMMASLAQRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRKQETKQERIERYE
KRDRQERQEKHE
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgcctgctgagggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagaccgggatgctgatagacggcccgcctcctcccgggataaagtgaag
gatgaggcaaagatgagtggcaagaaagatattggtaaggctgcagaggaaaagaggagg
cggcttgaggaggacaaaagaaagaaggaagaaaaagagcggaaacggaaagaggaggag
aaacagaaggcagaggaggagcagaggaagaaggaggaagatgagaagaagcagcaggag
gagcaggagaggaaagttcaggaggaggaggccaagagacagcgcgaagaggaggcagct
caactcaaagagaaggaggagggccaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagcttcgtgtccgcaaccagaatgcccacgagggccgtcccgaggagacc
ttctttagccgccttgactccagcttgaagaagaacacagcctttgtcaagaagctgcgc
acgctcaccgagcagcagcgcgatgccctctccaacgactttggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctctgtggtggaggccaagctgaagatctctgacgtg
ggctgcgccgtgcacctgtgctccctcttccaccagcgctacgccgaattcgccccactg
ctcctccaggcctggaaaaggcactttgaggcgcgcaaggaagagaaggcacccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagctcaccatcgtaggcctgttcacc
gacaaggagggcctgtcgctcatctatgagcagctgaagagcatcatcgggacggaccgc
gagacacacacgcatgtgtcagtggtcatcagcttctgtaagcactgtggggatgacatt
gcgggcctggtgcctcgcaaggtgaaggctgcacgggagaagtttggcctggccttccct
cccagcgagatcatcaacacggagaagcagcagccctttcagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagctgcagaacattgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacaggcacaagcagcat
gaggagtttgccacgtcctaccagaagctgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagagcttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctatgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaagtccaaggacaaagaggaggctgctgctaaagag
gctaaagatgctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgacgaggcagagaacgaggcagagctcgcc
aaaaaactgttggacgagcaaggtaaagatgaagggatcaagttagggtatgagagaggt
cagggaaacagagctagggcccactcatgggtgctcagggccaatcaactaaacagagaa
caagaggatgaggaggcaagcaccgggtcccacctgaagctcattgtggacgccttcatc
cagcagcttcccaactgtgtcaacagagacctcatagacaaggctgccatggatttctgc
atgaacatgaacacaaagtcaaacaggaggaagctggtccgagctctcttcaccgttccc
agacaaaggttggatctgctgcccttttactcccgtctggtggccacccttcacccctgc
atgtcagatgtggccgatgacctgtgctccatactcaaaggagacttcaggttccacatc
cggaagaaggaccagatcaacatcgaaacaaaaaataaaactgtgaggtttatcggggag
ctggccaagttcaagttgttctcaaaaacggacactctgcattgtctgaagatgctgctg
tcagacttctcccatcaccacatagagatggcctgcaccctgctggagaccagtggacgc
ttcctcttcagatcccccgactcccacctccggaccagcgtccttctggagcaaatgatg
cgtaagaagcaggcgcagcacctggatgctcgctacgtgaccatggtggagaatgcctac
tactactgcaaccccccgcccatggagaagactgtcaggaagaagaggcccccgctgcag
gagtacatccgcaaactgctctacaaggacctctccaaggtcaccacggagaaggtgctg
aggcagatgcgtaaactcccctggcaggacccagagtctaaaggctacctgatctgctgc
atggtcaacatctggaacgtcaagtacaacagcatccactgtgtggccaacctgctggcc
ggccttgtggcctaccaggaggacgtgggcatccacgtggtggacggggtcctagaggac
atccgcctgggaatggaggtgaaccagcccaagttcaaccagcgtcggatcagcagtgcc
aagtttctgggggagctctacaactaccgcatggtggagtcagcggtcatcttccgcacc
ctcttctccttcatctcgtttggagtgaacccggatggcggccccagccccctggacccc
cccgagcacctgttccgcattcgcatggtctgcaccctgctggacacctgcggacagtac
tttgaccgcggctccagcaagaggaagctggactgcttcctcatctacttccagaggtat
atctggtggaagaagagtgtggaggtgtggagtgcagagcaccagttccccatcgacatt
gactacatgatcagtgacaccctggagctgctccgaccaaagatgaggctctgcatctcc
ctggaagactccgcacgacaggtcaccgagctggagagggagttcctcgttaaactggga
ctggccatggatgggcagaaggacggccggccctccagtgccatggggagcgaaggcgag
gctctagacgaggatgacgatgatgacgacgaagagggaggggcggacacagaggaacag
tctggcaatgagagcgagatgaacgagccagaggaagaagaagggtctgagaatgaggaa
gaggagcgggaggaagaggaggaggagaacaccgactatctgaccgactccaacaaggag
aacgagacagacgaggagaacaatgaggtgaccatccgtggtggcggtctgaagcatgtg
gcatgtgctgaggatgaggacttcatccaggctctggacaagatgatgctggagaacctg
cagcagcggagcggggaggcggtgaaggtgcaccagttggacgtggccatccccctgcag
ctgaagagccagctgaagaaaggtcctggcggacccgtctgctctggagagggggacgca
gacatctcagacaccatgcagtttgtcatgctcacacgcaagggcaacaagcagcagttt
aagatcctgaacgtgcctttatcttcccacctggctgccaaccacttcaaccagcagcag
gcggagcaggaggagaggatgaggatgaagaagctcactctggacatcaacgagagacag
gagcaagaggactaccaagaaatgatggcgtctctggcccagcggccggctcctgccaac
accaaccgggagcggcggccgcgctaccaacaccccaaaggggcacccaacgccgacctc
atcttcaagaccggaggaagaaagcaggaaacaaagcaggagagaattgaaaggtacgaa
aagcgtgacagacaagagaggcaagagaaacacgagtga
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