Oncorhynchus gorbuscha (pink salmon): 124020026
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Entry
124020026 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: MHC class II transactivator-like
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ogo01001
]
124020026
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ogo04054
]
124020026
Enzymes [BR:
ogo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
124020026
Protein kinases [BR:
ogo01001
]
Serine/threonine kinases: Other
TAF1 family
124020026
Pattern recognition receptors [BR:
ogo04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
124020026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
AAA_16
VapE-like_dom
nSTAND_NTPase5
RsgA_GTPase
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
124020026
NCBI-ProteinID:
XP_046191403
LinkDB
All DBs
Position
Unknown
AA seq
896 aa
AA seq
DB search
MILSVFESSPGAKPKRSIVLLGNAGMGKSTLIKKLCVDWSDGLLPQFDFVFLLDGKALTL
PPEPTYSLRSLLLHLSCPHPRDVFSQVXSVPERVLVIFDGFEVVRDLEGLLQSPADDSEG
ENYSVRQLFSGLLQRKLLPGCSLLLSARPRGTVSGLLRRADSLLELSGFSSGHREIPGTI
LLWTVPRGPNLISVPVLALTRLHSQPFLLSVCWNPALCHMVCLLLEHWDVSESLPSTLTG
LCYRVLLLKMRRHTLKHTLGQTLPQTQTQAHTHTLKHTHGQTLPQTQTQAHTHTLKHSQK
HTLKHTHGQTLPQTQTQAHTHSLKYTHGQTLPQTQTQAHTHTLKHTHGQTLPQTQTQAHT
HTLKHSQKHVLKHTRNWTRAYIRTRSHTQSQIQLEDEKRRIETREEEERESWSGLAWQGV
KGHSSLLTLTLDNTVCVKLRLFGLTTGLVHSHWLRGEQGRDGDNILSWAHPFLQSFLGGA
HLSVSSCVSDRALLAQILPQPRGRRRPQGECLDLAQRFAVGLLFRNNADLRDLATLDTGA
MKVVAAKRAAVILHLESLHHGDLSPARLLEACHCVYETGDVRLVRHLVRNLPEVLSFQGV
PLCPADAFVVWNLLDQCRTLRRRFCLGLEDTGLRMTGLKLLTGLSNIHSYRACIADTITL
WEELEQSGEEELLKATVSKLTLNPFRATQVSHVQHLSTLVNIHTSRRLSESQSDGVLGEG
LPAVRDLHKLEFELGPVNGPLALPKLLELLPALHSLHHLDLENSRLGDSGAEGLAGAVLS
LSSLQIINLSQNCIGDQGIESLAPALSTIPSLHCLSLYSNVISDGGAESLAAVLPQMTSL
SDLDVKYNSFTALGAQNLASSLRDCPWIKSLGMWNVCIPYGVLERLQQQDPRIQLL
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgattctgtctgtgtttgagagctcccccggggcgaaacccaaacgttccatcgtgttg
ctaggcaacgccggcatgggcaaaagcacgctcatcaagaagctctgcgttgattggtcc
gacggcctcctgcctcagtttgactttgtgttcctactggacggtaaggctctgaccctc
ccccctgagccgacctacagccttcggtccctcctcctacacctctcctgcccccacccg
cgggatgtcttcagtcaggtcncctctgtcccggagcgtgtgctggtgatattcgatggc
ttcgaggtggtgcgtgacttggaggggctgcttcagtctccagcggatgacagtgaaggg
gagaactacagcgttagacagttgttctctggtctgctccaaaggaagctgctaccaggc
tgctctctgctcctctctgcccgaccacgaggcaccgtcagtgggctgctgagacgggct
gacagcctcctggaactctctggcttctcctccggacatcgagagatacctgggacaata
cttctctggacagtccctagaggccccaacctcatctcagtcccagtcctagccctcacc
aggctccacagccagccgttccttctgtctgtgtgttggaacccagctctgtgtcacatg
gtctgtctgcttctagaacactgggatgtttctgagtcactcccctccacgctgactgga
ctgtgttacagggtgttgctactaaagatgagacgacacacccttaaacacacactcggt
caaaccctaccccaaactcaaacccaggcacacactcacacccttaaacacacacacggt
caaaccctaccccaaactcaaacccaggcacacactcacacccttaaacacagtcaaaaa
cacaccctgaaacacacacacggtcaaaccctaccccaaactcaaacccaggcacacact
cacagccttaaatacacacacggtcaaaccctaccccaaactcaaacccaggcacacact
cacaccctgaaacacacacacggtcaaaccctaccccaaactcaaacccaggcacacact
cacacccttaaacacagtcaaaaacacgtccttaaacacacacgcaactggacacgagcg
tatatccgcactcgctctcacactcaatcccaaattcaattagaagacgagaagaggagg
atagagacgagagaggaggaagagagggagagttggagcggtctggcttggcagggggtt
aaaggtcattcatctctcctgaccctgactctggacaataccgtctgtgtcaagctgcgg
ttgtttggcctgacgactggactggtccattctcactggctgaggggggagcagggcaga
gatggtgacaacatcctgtcctgggcccaccctttcctgcaaagcttcctgggcggggcc
cacctgtccgtctccagctgtgtgtctgaccgcgctctgctggcccagatcctaccacag
cccagggggaggcgacggcctcagggagagtgtctggaccttgctcagcgattcgctgtc
gggctgcttttccggaacaatgcggacctccgggatctggccaccctggataccggcgcc
atgaaagtggtggcggccaagcgagccgctgtgatattacacctggagagccttcaccat
ggcgacctgagccccgctcggctcctggaggcgtgtcactgcgtttacgagacaggcgac
gtccgcttggtcaggcacctggtacggaaccttcccgaggttctgtcgttccaaggggtt
ccgctgtgccccgccgacgccttcgtcgtgtggaaccttttggaccagtgtagaacgctg
aggaggaggttctgtctggggctggaggacacaggactgaggatgacaggattaaaacta
ctgacgggtctcagcaacatacactcatacagggcgtgtatcgctgacaccatcactctg
tgggaggagctagagcagagtggggaggaggagcttctgaaagcgactgtgtccaagttg
acccttaaccctttcagagccacacaggtgtcccacgtccaacacctgtccacactggtc
aacatacacacaagcaggagactgtctgagagccaatcagatggtgtcctgggggagggt
ctaccggcagtcagagatcttcacaagctggagtttgagttggggccagtgaatggtcct
ctggcgctccctaaactcctggagctgctgccagccctgcacagtctacatcacctggat
ctggagaacagtagactgggggacagtggggctgagggtctggctggagctgtgctgtct
ctctcctctctgcagattatcaatctgtcccagaactgtataggagaccagggaatagag
agtctggctcctgctctgtctaccatcccctcgctgcactgtctcagtctgtacagtaat
gtgatatctgacgggggtgctgagagtctggctgctgttttacctcagatgacatcactc
agtgacctggacgtcaagtacaacagtttcacggccctgggagctcagaatctggcttcc
agtctgagggactgtccatggatcaagagtctggggatgtggaatgtgtgtattccctac
ggagtgttagagagactgcaacaacaggacccacggatacagctgctctag
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