Oncorhynchus gorbuscha (pink salmon): 124020636
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Entry
124020636 CDS
T07892
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ogo03016
]
124020636 (trub1)
Enzymes [BR:
ogo01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
124020636 (trub1)
Transfer RNA biogenesis [BR:
ogo03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
124020636 (trub1)
Prokaryotic type
124020636 (trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
124020636
NCBI-ProteinID:
XP_046191834
LinkDB
All DBs
Position
Unknown
AA seq
300 aa
AA seq
DB search
MAGSVTGVAVPKHSLSKLQSLNGLFAIYKKEGPTSADVLNSLKETLLKEAGVKDPNPRKR
KKQALKMGHGGTLDSAASGVLVVGIGNGTKMLSTMLAGSKKYMAVGELGKATDTLDATGK
VVHEKLYDHITREAFEEKLKQFTGDIMQVPPLYSALKKDGKRLSVLLKQGHEVEAKPARP
VTVYNLSLQDFTPPLFTLDVECGGGFYIRSLVDDLGKALSSCAHVRKLIRTKQGQFTLDD
HTLQEEHWTLQHIVQSMQPCPGSEVTKEDGTKPSPNLGVKRALNAQVKGDKNGKDETGEL
NT seq
903 nt
NT seq
+upstream
nt +downstream
nt
atggctggttcagtaactggcgtagctgtgcctaaacattctttatcaaaactacaatct
ttaaatggactttttgccatttataaaaaggaaggacctacgtctgctgatgttttaaac
tcattaaaagagacactcctcaaagaggccggtgtgaaagatcctaatcccagaaaaagg
aagaagcaagctctgaaaatggggcatggcgggactctggacagcgcagcctctggtgtg
ctcgttgttgggattggaaatggaacaaagatgcttagtactatgcttgctggttcaaag
aaatacatggctgttggagagttgggaaaagcaacagacacccttgacgccacaggcaag
gtggttcatgagaagctctatgatcacattaccagggaagcctttgaggagaagttgaag
cagttcactggggacatcatgcaggttcctccactgtactctgcactgaagaaggatggc
aagcgtctttctgtcctgctgaagcaaggccacgaggtggaagccaaacctgcacggccg
gtcacagtgtataacctgtcgctgcaggacttcactccccccctcttcactcttgatgtt
gaatgcggtggtggattttatatcagaagcttggtggacgacctgggaaaagcgctctcg
tcgtgtgcccacgtgaggaagctgatccggaccaaacagggtcagtttacccttgacgac
cacacgctgcaggaggaacactggacactacaacacatcgttcagtccatgcagccctgt
cccgggtcagaggtcaccaaggaggatggcacaaaaccaagcccaaacctgggggttaaa
cgggccctgaatgcccaggtgaagggggataagaatggcaaagatgaaacgggggagtta
taa
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