Oncorhynchus gorbuscha (pink salmon): 124021149
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Entry
124021149 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13C-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124021149
Membrane trafficking [BR:
ogo04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
124021149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_M
VPS13_VAB
VPS13_N
VPS13_C
WWE
PA_decarbox
Motif
Other DBs
NCBI-GeneID:
124021149
NCBI-ProteinID:
XP_046192457
LinkDB
All DBs
Position
Unknown
AA seq
2801 aa
AA seq
DB search
CEIRDSNNQPLHLISSSDKHGSDLLKVEYTKADINGPNFQTTFDNTEQNLKVELSSLDFL
LHTKALLSTINYLNTAVPQELTASKDREAKKQVEKAGQGKTVSKGPTNSNVFTFKLSAEL
GSFRVEVCDDQNIADITIQGIDGSVLVQAKETMVFARLRDIVVLDVDPKTIHKKAVSMVG
EEVFSFQMSLYPNATEGEGYSDTSKVDGKVTMRLGCIQIVYLHKFLMSLLTFLDNFQTAK
EALTVATAHAAEKAASSVRDFAQKSFRLSMDVKLKAPLIVVPQSSTSHNAFVVDLGLITV
GNSFSLMSAEGFSLPVVLDTMDVKLTQLKLSRTTLKQGSPQTDIEILQPINLEFLVKRNL
ASSWYNKIPGVEVQGMLKSMNMALGQEDFGVLMKTLRRTSERAANRARPGCGMSPVEAGG
GGGGGQPAAVTNAGGLGENIVNMLLNLEIKEVVVKLKKSRSDQKESPFLVLHVAQLGIHT
NVRQYDMVATTYIKKISMKCLEFSDSNGEPLCLISSSVESGADLLKVEYFKADRNRPNFA
TVHKNTEQMINVTFTSLDLLLHTEALLSTIDFLSSALSSGSLPPSPEEPKQKSEESSRAI
SAKSTALGSPSDGDVVDLKVMMRLGAFNVLVCDQNCNMADIKIQGFNGSLLMQGPQTHIS
ARLRDFIVINVDPKAISIVGDEVFSFSMSLTPKATEGAGYADTSKTDGKVQLNVGCVQVV
YLHKFVMSLLNFSNNFQTAKDALSVATAQAAEKAASSIRDFAQKSFRLSMDIRLKAPLII
IPQSSTSHNALEVDLGLITVGNSFSLLAVEGCPLPAVIDHMDVQLTQLKLSRIYMEQDSQ
PSTELLEPVNLLLTVKRNLAAAWYQKMAAVEVEGDLKPMKVALSQDDLTVLLRILMENIG
EASGLQPDQHPSPDTTALTHKTTPMLKTDYAKDGVENTVELPERQEEEEPLETMTFIFNI
ESLGLVLYSNDPKQVSAVSQHQERLCLGELTFHLMKASGKMFNNGSMEVSTILTACTLDD
MRTGVQRVTSRMLGKRDEASEEAMIDVAYTQSAGERQVVAVVQKLYLCASVEFLMAVADF
FIQALPQSSAQDVPTNTKLALPGLAKTSQPPQLRDRANTDPRTGSSPRTKLRAVILDPEV
VFVANLMRADAPALVASFQCDFSLMLEPGGGPLGGGPPGGGPGAPGGQSMTANLRELKVL
ACPFIRTNETKVVTTVLRPCSVFLETKTHPNQPLSGCVTVEEVIIKISPVILNTVRTITA
AMTAKPKDEAAEEEKTEVGNLWSTMNIYACNYWFLGVDSASEVTESFSDQDGRNFGESFK
VDVKVIQVTMESGLGHRTVPLLLAESSLSGTAKNWSSLLYLCSDMTLEVNYFNETHAVWE
PLIERVEDGKRRWNLKLEMKNSPVQDKSPVPGDDFVVLPEPRTAINICSKDTMNITVSKC
CLNVLTNLAKAFSEGTASTFDHSLKEKAPFTIRNALGIPLTVQHSANLRVVASPGQGKLH
EVGVGQSVDLEYSGSGTSTRGKVSALQRQESCLFNLSIAPTGYSEISNMAVDQPGRRLYN
VRDPLLQENVSVLVQTDASEGNKVITVRSPLQIQNHFSVPFTILKYCPKSRGMVNIGLAE
PEKESDVALDSYRCQLFLQPAGRLEGQYGPSSTCIAWKEQVHLSSEVRSLLQCPSADSSF
LPLQVTTLATPDHLSFISSQREDDWDPAYVIHLHPAVTLRNLLPYSIRYLLEGSAEFLEL
QEGSTADVLNARIGGEIMEMVLVKYQGRNWSGRIRIAQDMQEFFPVCFTCDSAQELSVDL
SVHVARLHGRLTLAVFSPYWIVNKTSRVLQYRAEDVSVKHASDFRDVVLFSFKKKNIFSK
NKLQLCVSTSSWSDGFSLDTVGSYGCVRCPANTMDYLVGVSIQMSSFNLTKMVTMSPFFT
LVNKSSYELEVGEVQTEEGSVNGKWHYISSTECLPLWPELITGXLCVRVVGSDSKSKSFF
FNKQDNGTLLGMDQYGGVIVDVNISDNSTVISFTDYYDGAAPALLVNHTPWVTITYRQSG
STESRALNPGEAQRFAWDNPAGVRKLSWKCQEHSSGDLDLVKDECGQFAYDGLSQVHWVS
FLNGRQRVLLFTEDVAVVTKARQAEELEQFQQEVNVSLQNLGLSLVNNDNRQEIAYVGIT
SSGVVWEMRPKSRWKPFNQRNIRLLEKAYQKHLAGGTPEPGWVKLETNLEVNFGKVPMVM
RQPFSSSIRRNFLSGIQVEFKQSPHQRSLRAQLHWLQVDNQLTGALFPIVFHPVPPPKSI
ALDSEPKPFMDVSIITRFNQHSQVTQFKYFMVLVQEMAVKIDQGFLGAILALFTPAAESH
VDKQKTKLIEKDLAMLQAELMEASMTDNSGLSFFEYFHISPIKLHLSLSLGSSGDESGQQ
EMMAIQSVNLLLKSLGATLTDVDDLIFKLAYYEVNYQFYRTEKLMWAVVRHYSEQFLKQM
YVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPFQGAVQGPEEFAEGFVIGVRSLLGHTVGG
AAGMVSRITGSVGKGLAAITMDKEYQQKRREEMNRPPRDFGESLAKGGMGFFKGVVGGVT
GIVTKPVEGAKKEGAAGFFKGIGKGLVGVVARPTGGIVDMASSTFQGIQRVAESTEEVTK
LRPVRLIREDGIIRPYDQEDAKGYDLFQRSEIKQLEGEIFREHCLYPGHRKTNVIVTNRR
VMCVKEVEFVGHFNKEWECLFEHFSRPPYVEGGDLMIYCKEQNKLKFQKRDGQEPMRVLH
LKNPATAQKLCEAIEQAQSAQRQHRMVKQKSQRFLKLGDRC
NT seq
8406 nt
NT seq
+upstream
nt +downstream
nt
tgtgagatacgagactccaacaaccagcctctgcacctgatcagctcctcagacaaacac
ggctcagacctgctcaaagtggagtacaccaaagctgatatcaacggtcctaatttccag
acaacgtttgacaacactgagcaaaacctgaaggtggagttgtcgtctctagactttctc
ctccacaccaaagcgctcctctccaccatcaactatctgaacacagccgtaccccaggag
ctgacagcctccaaggacagagaggccaagaaacaggtggagaaggctggacaggggaag
acagtgtcgaaaggaccaacaaacagcaatgtgttcaccttcaaactgtctgctgaactg
ggttccttccgtgtggaggtgtgtgatgaccagaacatcgctgacatcacaatacaaggt
attgatgggtcggtgctggtccaggccaaagagacaatggtgttcgccaggctcagggac
atagtggtgctggatgtcgaccccaaaaccatccacaaaaaggccgtctccatggtgggc
gaggaggtgttcagctttcagatgtccctgtatcccaacgctacggagggagagggttac
tcagacacctccaaggtggacgggaaggttaccatgaggctgggctgcatccagatcgtc
tatctgcacaagttcctcatgtctctactgacttttctggataacttccagacggccaaa
gaggcgttgactgtggccacggcccacgcagcagagaaggcggcctccagcgtcagagac
tttgcccagaagagcttccgtctctccatggacgtcaagctgaaggcccctctcatcgtc
gtccctcagtcctccacctcacacaatgcgtttgtggtggacctggggctcatcaccgtg
ggcaacagtttcagtctgatgtcggctgaagggttctcgctccccgttgtgttggacacc
atggatgtcaaactcactcagctcaaactgtccaggaccacgctgaaacaaggctcccca
cagacagacatcgagatccttcagccaatcaatttagagtttctggtcaaacggaacctg
gcctcttcctggtacaacaagatccctggagtagaggttcaaggaatgctcaagtctatg
aatatggctctcggtcaggaggactttggtgtcctgatgaagacactgaggagaacatcg
gagagggcagcaaacagagcacgtcctggatgtgggatgtctcctgtggaggctggagga
ggaggaggaggaggacagcctgctgctgttaccaatgcaggaggactgggagaaaacatc
gtcaatatgctgctcaacctggagattaaggaggtggttgtgaagctgaagaagtccagg
tcagatcagaaggagagtccgttcctggttctccacgtagcccagctgggcatccacacc
aatgtcaggcagtacgacatggtggccacaacgtacatcaagaaaatctctatgaagtgc
ctggagttctcagattccaacggtgaaccactgtgtctgatcagttcctctgtggagtca
ggtgctgacctcctcaaagtggaatacttcaaggctgacagaaacaggccaaactttgcc
actgttcacaagaatactgagcagatgatcaacgtgaccttcacctccctggatctactg
cttcacacggaggctctcctctccaccatagacttcctgtcttctgccctgtcctccggc
agcctgcccccttcaccagaggagcctaagcagaagtctgaggagagcagcagggccatc
tccgccaagtcaacggctctaggttctccgtcggacggtgacgtcgtcgacctgaaggtg
atgatgcggctgggggcgttcaacgtcctagtgtgtgatcagaactgcaacatggctgac
atcaagatacaaggtttcaatggatccctcctgatgcaagggcctcaaacccacatctct
gcccgccttcgggatttcatcgtcattaatgttgacccaaaagccatctctatcgtagga
gacgaggtgtttagtttcagtatgagtctgacccccaaggcgacagagggtgccggctac
gcagacacctccaagacggacgggaaggtccagctcaacgtgggctgtgtccaagtcgtc
tacctccacaagtttgtcatgtctttgttgaatttcagcaacaatttccagacggccaaa
gacgctttgagtgtggccacggcccaggcagcagagaaggcggcctccagcatcagggac
tttgcccagaagagcttccgtctctccatggacatcaggctgaaggcccctctcatcatc
atccctcagtcctccacctcacacaatgcactggaggtggacctggggctcatcaccgtg
ggcaacagcttctctcttcttgctgtggagggatgtccacttcctgctgtcattgaccac
atggacgtacagctcacacagctcaaactgtccaggatttacatggaacaagactctcag
cccagtactgagctgctggagcctgtcaacctgctcctaacagtgaagaggaacctggct
gcagcatggtaccagaagatggccgccgtagaggtagagggagacctcaagcccatgaag
gttgccctgagtcaggacgacctaacagttctgttgaggatcctgatggagaacattgga
gaagccagcggtctgcagccagaccaacaccctagccccgacacgacagccctgacacac
aagaccacgccgatgctcaaaacagactacgccaaagacggtgtagagaacacggttgaa
cttccagaacgacaggaagaagaggaacccctcgaaaccatgacgtttatcttcaacata
gagtccctgggactggtcctgtacagcaatgacccgaaacaggtatcggctgtgtctcaa
caccaggagaggctgtgtctgggggagttgacctttcacctgatgaaggcttcagggaag
atgtttaataacgggtccatggaggtctctaccatcctcacagcctgcaccctggacgac
atgaggacaggcgtacagagagttacctcacggatgctgggtaagcgtgacgaggcgagc
gaggaagccatgatagacgtggcgtacacgcagagcgccggcgagcgccaggtggtggcg
gtggtacagaagctctatctgtgtgccagcgttgagtttctcatggcagtggcagacttc
ttcatccaggccctgccccagagctccgcccaggacgtgcccactaacaccaagctagcc
ctgccaggcctggccaagacctcccagccaccccagcttcgggatagagccaacactgac
cccagaacaggctccagtcccaggaccaagctgcgtgcagtcatactagacccagaggtg
gtgtttgtggctaacctgatgagagccgacgctccggcgctggttgcctccttccaatgt
gacttcagtctgatgctagagcctgggggagggccccttgggggagggccccctggggga
gggcccggggcccctgggggacaaagcatgacggccaacctcagagagctcaaagttctg
gcctgtcccttcatcaggaccaatgagaccaaggtggtcactacggtgctacgtccgtgt
tctgtcttcctggaaaccaaaacccaccccaaccaaccgctttccggctgtgtgactgtg
gaggaagtcattatcaaaatctcccctgtcatcctgaacacagtgaggaccatcacggca
gccatgacggcgaagcccaaagacgaggcagcagaggaggagaagaccgaggtcggcaac
ctgtggtccaccatgaacatctacgcctgcaactactggttcctgggagtggactctgcc
agcgaggtgacggagagtttcagtgaccaggacggccgtaactttggggagagtttcaag
gtggatgtgaaggttattcaggtgaccatggagtctggtctgggccacaggacggtcccc
ctgctgctggctgagagctctctgtctgggacggccaagaactggtcctccctcctctac
ctctgctctgacatgaccctggaggtgaactacttcaatgagacccatgctgtctgggaa
ccgctgatagagagagtggaggacggcaaacgcaggtggaacctcaagctagagatgaag
aacagccctgtgcaggataagagccctgttcccggggatgacttcgtagttctccccgag
ccacgcaccgccatcaacatctgttccaaagacaccatgaacattaccgtctctaagtgc
tgtctcaatgtgttaaccaacctggccaaggcattctctgagggcacagcctctaccttt
gaccacagtctgaaggagaaggcccccttcaccatccgcaatgcgctgggcatccctctc
accgtgcagcacagtgccaacctgcgggtggtggcctcccccgggcagggcaagctccac
gaggtgggggtagggcagagcgtggacctggagtactctgggtcaggcacctcgacacgg
ggcaaagtgtctgctttgcaacgacaggagagctgcctcttcaacctcagcatcgctcct
acaggttacagtgagatctccaacatggcggtggaccagcctggcaggaggctgtataac
gtgagagatcccctgctgcaggagaacgtgtctgtgttggtacagactgacgcctcggaa
ggaaacaaggtcatcaccgtccgttctccgctacagatccagaaccatttctcagtgccg
tttaccatcctgaagtattgtcccaaatccagagggatggttaatataggactggcagag
cccgagaaagagtctgatgtcgccctggactcctacaggtgtcagctcttcctccagcca
gccgggcgcctagagggccagtacggcccgtcgtctacctgtatcgcctggaaggagcag
gtccacctgagctctgaggtgcggtccctcctccagtgtccgtcggcagacagcagcttc
cttcccctccaggtgaccaccttggccacaccagatcacctgtccttcatttcctcccag
cgagaggacgactgggaccctgcctacgtcatccacctccacccagctgtgaccctccgg
aaccttctgccttacagcatcagatatctactggagggctcagcagagttccttgagctc
caggagggcagcacggcagacgtcctgaacgcccgtataggaggtgagatcatggagatg
gtcctggttaaataccagggtcggaactggtccggacgtatccgtatcgcccaggacatg
caggagttcttccccgtgtgcttcacctgcgactcggcccaggagctgagcgtggacctg
agcgtgcacgtggcgcggctgcatgggcgtctgacgctggctgtgtttagcccgtactgg
atcgtcaataagacgtccagggttctgcagtaccgcgcggaggacgtctccgtcaaacac
gcgtcggacttcagggacgtcgtcctcttctccttcaagaaaaagaacatcttcagcaag
aacaagctgcagctctgtgtgtccaccagttcctggtctgatggcttctcattggatacg
gtggggagttatgggtgtgtcagatgccctgccaacaccatggactatctggttggcgtc
agcattcagatgagtagtttcaacctgaccaagatggtgaccatgagtccgttcttcacg
ctggtcaacaagtcttcctacgagctggaggtgggagaggtgcagacagaggagggcagt
gtcaacgggaagtggcactacatctcctctacagagtgcctccccctctggccagagttg
atcacagganagctgtgtgtcagggtcgtgggctcagactccaagtccaagtccttcttc
ttcaacaaacaggacaacggcaccctgctgggcatggatcagtatggaggtgttatcgtc
gacgtgaacatctcagacaactctactgtgatcagcttcactgactattatgatggagct
gctccagctctcctagtcaaccacacaccctgggttaccatcacctacagacagagcggt
tccacagagagcagagcgctgaatccgggagaagcccagaggtttgcctgggacaaccct
gcaggggtccgcaaactcagctggaagtgtcaggagcacagcagtggagacctggacctg
gttaaggatgagtgtggtcagtttgcctacgacggtctatcccaggtccactgggtgtcc
ttcctgaatggtcgccagcgcgtgctgctcttcaccgaggacgttgccgtggtgaccaag
gcgcggcaggcggaggagctggagcagttccaacaggaagtgaacgtgtcgctgcagaac
cttggcctgtcactcgtcaacaacgacaaccgccaggagatcgcatatgtcggcatcacc
agctctggtgtggtgtgggagatgagacctaagagccgatggaagcctttcaaccagagg
aacatcaggctgttggagaaggcctaccagaaacacctggctggaggcacacctgaaccc
ggctgggtcaaactggagaccaacttagaggtgaactttgggaaggttcccatggtgatg
cgtcagcccttttccagtagtatcaggaggaacttcctgtctgggattcaggtggagttc
aaacagtcgcctcatcagagaagtctccgggcccagctacactggctccaggtggacaac
cagctgactggagctttattccccattgtgttccaccctgttcctcctccaaagtccatc
gctctggactcagaaccaaagccttttatggacgtcagcatcatcaccaggtttaaccaa
cacagtcaggtcacgcagttcaagtacttcatggttctggtccaggagatggctgtgaag
attgaccagggattcctgggagccatcttggccctgttcaccccagctgccgaatcgcat
gtggacaaacagaagaccaagctgatagagaaggacttggcgatgttacaggctgaatta
atggaggcgtccatgaccgacaactcaggcctcagcttctttgaatacttccacatctcc
cccatcaaactacacctcagtctgtctctgggctctagtggagacgagtctggtcaacag
gagatgatggccatccagtcagtcaaccttctgttgaagagtcttggagcgacactgacc
gacgtagacgacctcatcttcaaacttgcctactatgaggtgaactaccagttctacagg
acagagaagctgatgtgggctgtggttagacattacagtgagcagttcctgaaacagatg
tatgtgttggtgctgggcctggatgtcctggggaacccgttcggcctgatcagaggcctg
tctgaaggagtggaggccttcttctacgagcccttccagggagcggttcagggacctgag
gagttcgctgagggctttgtgatcggagtacgcagtctactgggtcacactgtcggtggc
gctgcaggcatggtgtcccgtattacggggtcagtgggtaaaggactggctgccatcacc
atggataaagagtaccagcaaaaaagacgggaggagatgaacagaccacccagagacttt
ggagagagtctggccaagggaggcatgggattctttaagggggtcgtcggcggggtaaca
ggcatcgtcaccaaacctgtggaaggggccaagaaggagggagcggcggggttcttcaag
ggcatagggaagggtctggtgggggtggtggccaggccgacagggggcatcgtagacatg
gcctccagcaccttccaaggcatacagagggtggcagagtcgacagaggaagtgaccaag
ctgaggccggtcagactgatccgagaggatggaatcatcagaccttacgaccaggaggac
gccaagggatacgaccttttccagaggtcagagatcaagcagctggaaggagagatcttc
agagaacactgtttgtaccctggacacaggaagaccaacgtcatagtgaccaacaggaga
gtgatgtgtgtgaaggaggtggagtttgtgggacacttcaacaaggaatgggagtgtctg
tttgagcatttctcaaggcctccgtacgtggaaggaggagacctgatgatctactgcaag
gaacagaacaagctgaagtttcaaaagagagatggacaggaacccatgagagtgctgcac
ctcaagaaccctgccactgcccagaaactgtgtgaggccatagagcaggcccagtcggcc
cagaggcagcatcggatggtgaagcaaaaatcacagcgctttctcaaactgggagacagg
tgttga
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integrated database retrieval system
