Oncorhynchus gorbuscha (pink salmon): 124024509
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Entry
124024509 CDS
T07892
Name
(RefSeq) CCR4-NOT transcription complex subunit 4-like isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124024509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124024509
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124024509
04121 Ubiquitin system [BR:
ogo04121
]
124024509
Enzymes [BR:
ogo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124024509
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
124024509
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124024509
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124024509
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124024509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-UDP
zf-RING_2
Rtf2
zf-C3HC4
Torus
Motif
Other DBs
NCBI-GeneID:
124024509
NCBI-ProteinID:
XP_046194382
LinkDB
All DBs
Position
Unknown
AA seq
701 aa
AA seq
DB search
MQVLGANLSRKVPGFARKSLRCPLPRVSLCSSSWISCSPEVKVMDPMECPLCLEPLETDD
ANFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPENPAVYNPLSAEELQRIKNEKKAK
QVEKKQKTTENRKHLASVRVVQRNLVFLVGLSQRLADPEILKRPEYFVKFGKVHKVVINN
STSYAGSQGPSASAYVTYIRSEDALRAIQCVNNLVVDGRTLKASLGTTKYCSYFLKSMGC
PKPDCMYLHELGDDAASFTKEEMQAGKHQEYEQRLLQDLYQNPSFTTQTSGGETTKSSKP
SCLQRSNSNNSHGQDVWPALQPTGKTTNGLSEHSKSPPSNGGGLDTDRMTPDGPERDVGL
GSVTGLSPFSSSRDPPRAAVSFSPRDALPEVTRSRDTQHGDSSERHNLLPDSDSPSPPPV
LSGPPGFSKASQVVPISVTTRSPFQGAAAESQSLFSDNSNYRHPNPIPSSLRGFPSTSTQ
NNHDTWPTAPQPHSLFTSDSIPVSSSTDWQAAFGFGSSKQQTSEDDLGFDPFDITRKALE
DLIEKELSVQDSLPSLSISPGPFPPHHHHHHSLLSSVAAPGPPGEPIPRNHFFSGPNSGL
SSNHCFSQMHQHHPQQRAVYNSFSFPGQPPSSSSSSSSQTSRHPWMTSAPNRNNFTTHFG
GNRTVSQHSSFLDLMLPSTGLGGIATTGNTYHNNVYRAFRK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtcttgggggccaatctgagtaggaaagtcccaggctttgcccggaagagcctg
cgctgccctctgccacgtgtctctctctgctcgtcgtcttggatatcctgcagtccagag
gtgaaggttatggatcctatggagtgtccgctgtgcttggagccgctggagacggacgat
gccaacttcttcccctgcacctgcggctaccagatctgtcgcttctgttggcaccgcatc
cgcacagacgagaacggcctctgccctgcctgcagaaagccttacccagagaacccagcg
gtctacaaccccctgtcagcggaggagctgcagaggataaagaatgagaagaaggccaaa
caggtggagaagaaacagaagacgacagaaaacaggaagcacctggccagcgtcagggtg
gtgcagagaaacctggtgtttctagtgggactgtcacagagactggccgaccccgagatt
ctaaagagacccgagtattttgtgaagtttgggaaggtccataaggtagtcatcaacaac
agcacctcatacgccggctcacagggccccagtgccagtgcctatgtcacttacatccgc
tcagaagacgccctcagagcaatacagtgtgtcaacaacctagtagtagacggcagaaca
ctgaaggcttctttagggacgacgaaatactgcagctactttctgaagagcatggggtgt
cccaaacctgactgtatgtatctacacgagctgggggacgatgcggccagcttcactaaa
gaggagatgcaggcagggaagcatcaagagtatgaacagaggctgttacaggatctgtac
cagaaccccagctttaccacccagacctcaggaggggagacgaccaagagctctaaaccc
agctgtttgcagagatccaacagtaacaacagtcacggacaagacgtgtggccagcgtta
caacccacggggaagacgaccaacggtctatcggagcacagtaagagcccgccgtcaaac
ggcggcggcttggacactgaccgcatgacaccggacggaccagaacgtgacgttggcctg
ggctctgtgactggcctctcgcccttctcctcaagccgtgaccccccaagggccgctgtg
tctttcagccccagggacgctctgccagaggtcaccaggagcagggacacccaacacggg
gactcctcagaacgtcacaacctgctcccagacagtgactctccgtcgccccctcctgtc
ctctccggccctcctggtttctccaaagccagccaggtggttcccatcagtgtgactacc
cggtctccctttcagggggctgccgccgagtcccagtctctgttctctgacaatagtaac
tatcgccatcctaaccccatccccagcagcctccgtgggttccccagcacctccacacag
aacaaccacgacacctggcccactgcaccccaaccacacagcctcttcacttcagattcc
atcccagtatcgtcctcaacagactggcaggcagccttcggcttcggctcatccaaacaa
cagacgtcagaagatgacttgggattcgatcctttcgacatcacccgtaaagccctggag
gacctgatagagaaggagctcagcgttcaggacagcctcccgtccctctccatctcccca
ggtcccttccccccccaccaccaccaccaccactccctcctgtcctccgtagctgctcct
ggtccccctggagagccgataccccgtaaccacttcttctctgggcccaactccgggctc
tctagtaatcactgcttctcccagatgcatcaacaccaccctcaacaacgggccgtctat
aactccttcagcttccccggacagccgccttcatcatcgtcctcgtcttcatcacagacc
agccgccacccctggatgacgtctgccccgaaccgaaataacttcacaacgcacttcggc
ggaaaccgcacggtgtcacaacacagcagcttcctggacctgatgctgcccagtacaggg
ctgggaggcatcgccacgacaggtaatacataccataataatgtatacagagcgttcaga
aagtag
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integrated database retrieval system
