Oncorhynchus gorbuscha (pink salmon): 124024854
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Entry
124024854 CDS
T07892
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03030
DNA replication
ogo03410
Base excision repair
ogo03420
Nucleotide excision repair
ogo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124024854 (rfc1)
03410 Base excision repair
124024854 (rfc1)
03420 Nucleotide excision repair
124024854 (rfc1)
03430 Mismatch repair
124024854 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogo03032
]
124024854 (rfc1)
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124024854 (rfc1)
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124024854 (rfc1)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124024854 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_5
AAA_7
RuvB_N
AAA_33
Rad17
AAA_30
AAA_16
AAA_14
AAA_17
nSTAND3
NPHP3_N
AAA_18
NTPase_1
RNA_helicase
AAA_19
BRCT_2
Motif
Other DBs
NCBI-GeneID:
124024854
NCBI-ProteinID:
XP_046194577
LinkDB
All DBs
Position
Unknown
AA seq
1184 aa
AA seq
DB search
MDIRRFFVSSKPAAQKPSQDGTLHTEKESTKKKKKSVSTDEEVKKKKPATKITSPKVEKK
KDNDKKRKRRALIESDSEEEVVEQKQKAQKPNPPLPPAPLPPAKKDPVQYVSETDSDSDN
FLSLKKSQGNGVTRPGKPGTKESHRSPPKPTLAPATGKGGMKKSPPAPVTPKSAPLQTKR
TPTSVLDYFGSGSVQRSDRKLVASTKRKTDPVESLTDEVIAQQMDEDMELERQVHEDEEL
ERQVHEDEELERQVHEDEEFAKTLAMLDQQPHAKKARKYSGEDLGSANKSSANSSHSSTT
SQSQSNGRDHNQDVIGPSPEKVPPLVKTSSKLSMMKKREEEEEGGGKTNLSINASVSPKK
EFLTPSSTDRKSKLKTGSVTMVTTPTTLKTSPKKESTSPEESGKKRGNSSAFRSFLNRDG
PRALGSKPIPTGAENCLEGCVFVISGVLESMEREDAKCLIERYGGKVTGNISKRTTYLVM
GRDGGAAKTEKAEGFGTKILDEDGLLEFIRRTPGKKSKYLIAAEAENKGFKSRTPDTKTT
SRTPKQSPKTRSMTPSPSKPGSASGRGVRVGDSVTLPGRGTGSGVKRGLDLGGKSHSSSS
SATVSLPSFAGEDFSLLWVDKYRPQNLKAVIGQQGDQSQANKLLRWLKNWHTHHAVGGAK
PAGRGFGKFTSTKDNGSSFKAALLSGPPGVGKTTTAALVCEELGYSYVEMNASCTRSKNS
LKQVIAESLNNTSINNFYTGSSQTVSSKHVLIMDEIDGMAGNEDRGGIQEMIGLIKQSRI
PIICMCNDRNHQKIRSLANYCFDLRFQRPRLEQIKGAMMSIAFKEGLKVPPPALNEMILA
SNQDIRQVLHNLSMWSAKDKVMTYDRVKEDANNARKDMKLGPFDVCRKVFSKGEESGHMT
LIDKSDLFFHDYSLAPLFVQENYIHVKPAAAGGDMKSHLVLLSKTADSICDGDLVDRQIR
SKQAWSLLPTQAIYSSVLPGELMRGYMTSFPSFPSWLGKFSSGNKHSRIIQELASHMSLK
TLSSRQAVSLDYLPYLRMALLCPLQRQGAEGAGQAVQLLDDYHLVREDVDSLMEISLWGQ
PDPYAKLDPKVKSAFTRAYNRETHLTPYSLQPIKKGRRGGGVETEPGGEGQEEQPEEEEE
EEGVAADAMIKLKKAKPSKEPKKEKTTAGDSGKGKGKGKGKARK
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atggacatcaggcggttctttgtatcaagcaaacccgcagcacagaaaccatctcaggat
ggaaccctccacacggagaaggaatccacgaagaagaagaagaaatccgtctcaacagac
gaagaagtgaagaagaagaaacctgccaccaagatcaccagccccaaggtggagaagaag
aaggacaatgataaaaagagaaagaggcgtgctctcattgagtcagactctgaggaggag
gtagtggagcagaagcagaaggcccagaaaccaaaccctcctcttcctccggctcctctt
cctcctgccaagaaagacccggtgcagtacgtctctgagacagattcagacagcgataac
ttcctgtctctgaagaagtcccagggtaatggagtgaccagaccagggaagcccgggacc
aaagagagccacaggtcccccccgaaacccacccttgctcccgccacagggaaaggaggg
atgaagaagtctcctccagcccccgtcacccctaaatcagcgcctctgcaaaccaaacgc
acccccacttctgtcctggactactttggcagtgggagtgtccagcgctcggacaggaaa
ctggtggccagtaccaagaggaagactgaccctgttgagtcgctgactgatgaggtcatc
gcccagcagatggacgaggacatggagttggagaggcaggtccacgaggacgaggagttg
gagaggcaggtccacgaggacgaggagttggagaggcaggtccacgaggacgaggagttt
gccaagacgctggccatgttggaccagcaaccacacgccaagaaggctcgtaaatactct
ggtgaggatctggggtcagccaacaaaagtagcgctaactcctcccacagcagcactacc
agccaatcacagtccaatgggcgggaccacaaccaggacgtgatcggtccgtcccctgaa
aaggtcccccctcttgttaagaccagttccaaactgtccatgatgaagaaaagggaggag
gaagaggaaggaggaggcaagacaaatctgagcatcaatgcgtccgtctctcccaaaaag
gagttcctaaccccttcgagcacagacaggaagtccaagctcaaaacaggaagcgtaacc
atggtgaccacacccacaactcttaaaacctcccccaagaaagagagcaccagtccagag
gaatcggggaagaagcgagggaactcctcagccttccgtagtttcctgaaccgagacgga
cccagagccctgggatctaaacccatacccactggagcagagaactgcctggagggatgt
gtgtttgtgatctctggcgtgttggagagtatggaacgtgaggacgctaagtgcctgata
gagcgttatggagggaaggtgaccggtaacatcagtaagaggacaacatacctggtgatg
ggcagagatggaggagccgccaagactgagaaggcggaggggtttggaactaagatcctg
gatgaggatggtctgttggagttcatcagaagaacaccagggaagaaatccaagtacctg
attgctgccgaggcagagaacaagggatttaagagcagaaccccggacaccaagaccacc
tcccgcacccccaaacagtcccccaaaactcgctccatgacccccagcccctccaaacct
ggctcggcgtcggggcgaggagtcagggtaggggacagcgtgaccctcccagggaggggt
acaggttcaggggtcaaaagagggctggacttggggggtaagagccattcatcttcctcc
tctgccactgtgtctttgccctcattcgcgggtgaagatttcagtctgctgtgggtggat
aagtaccgcccccagaatctgaaggctgtgattggtcagcagggagaccagagccaagcc
aataagttgcttcgctggctgaagaactggcacacccaccatgcagtgggaggggctaaa
ccagcagggagagggtttggtaagtttaccagtactaaggataatggttcaagcttcaag
gcagccctgttatctggacctcctggcgtgggcaagaccaccacagctgccttggtctgt
gaggagctgggctacagctatgtagagatgaatgccagctgtactcgcagtaagaacagt
ctgaaacaggtgatcgctgagtctctgaacaacaccagtatcaacaacttctacacaggt
tcgtctcagacagtcagtagtaaacatgttctcatcatggatgagattgatggcatggcc
ggcaacgaagaccgcggaggaatacaggagatgatcggtctgattaaacagtccaggatc
cccatcatctgtatgtgtaacgaccgtaatcaccagaagattcgctctctggccaactac
tgctttgacctgcgcttccagagaccacgactggagcagatcaagggtgctatgatgtcc
attgctttcaaagagggtctgaaagtcccgcctcctgccctcaacgagatgatcctggca
tccaatcaggacatccgacaggtcctccacaacctgagcatgtggtcggctaaggacaag
gtcatgacctacgaccgggtcaaagaggacgccaacaacgcacgcaaggacatgaagttg
ggtccgtttgacgtgtgtcggaaggtgttctccaagggggaggagtcaggtcacatgacg
ttgattgacaagtcggacttgttcttccacgattactccctggcccccctcttcgtccag
gagaactacatacatgttaaacctgctgctgctggtggtgatatgaagtcccacctggtc
ctcctcagtaagacagctgattctatctgtgatggagacctggtggacagacagatacgt
tccaaacaggcctggtctctactgcccacacaggccatctattccagtgtgttaccagga
gagttgatgaggggttatatgacctccttcccctcgttcccctcctggctgggaaagttc
tcctccggcaataaacactcccggatcattcaggagctggcctctcacatgagcctcaag
acattaagtagcagacaggcagtgagcctggactaccttccgtacctccgcatggccctg
ttgtgtcctcttcagaggcagggggcggagggggccggtcaggccgtccagctgttagac
gactaccacctggtcagagaggatgtggacagcctcatggagatcagcctctgggggcag
cctgacccctacgctaaactagaccccaaggtgaaatcagcgttcacgagggcctataac
cgggagacccacctgacaccgtactccctccaaccaatcaagaagggccgtcgtggcggg
ggggtggagacagaaccaggaggagaagggcaagaggaacagcctgaggaagaggaggag
gaagaaggtgttgcagctgacgccatgatcaaattgaagaaggccaaaccctccaaggag
cccaagaaggagaagacaacagccggggattctgggaagggcaaaggcaaaggaaagggc
aaagccaggaagtga
DBGET
integrated database retrieval system
