Oncorhynchus gorbuscha (pink salmon): 124025783
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Entry
124025783 CDS
T07892
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124025783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124025783
Enzymes [BR:
ogo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124025783
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124025783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_Thc1
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
124025783
NCBI-ProteinID:
XP_046195071
LinkDB
All DBs
Position
Unknown
AA seq
641 aa
AA seq
DB search
MDFLLFQFGLCAFTYDQAESKYVIKTFNFYIFPKPFNRTSPDTKFICQSSSIDFLASQGF
DFNKVFRNGIPYLNQEEEVQLREQYEERRSQSNGSGNPSYISPNPNKGPGSVPEEHREYI
GRVVEKVESLFTTSEKTVDLEPCTGFQRKLIYQTLNSKFPKGLHVETLETEKKERYIQIS
KVDDEERKRRRQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFYCL
LPEVQNTDLNDFKYICCVRVWVFPRLLDTKLMATTQPFKELINITSLAELQKQLKESPFK
SPKVVTAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANYLGTFLLPRVHIPSQSKLIQP
FFARLFLMRIIDIPYLNISGPDVQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWID
DTSAFVSLSQTDQVQIAMNTSRYAESYRIQTYVEYVQGRQQVRESQGHSTSSWDEDGWVK
PHYTSPSTVGAGPTGYSYGHNRPSLGKRCVSPIQEEQPTEGEAQRHADGWSGYTHSNTHS
DTGSKKIRTDGVCVRTYAGVVDSRTSEGWLKTQSESDSSSMSPIQEEAGSAAVDDASDPA
AGEWQQQPSTNQSKKSRKNNRMRKSDGAETTSSLFDVPQVW
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atggacttcttgctgtttcagtttggactgtgtgcgttcacatatgaccaggcagagtcc
aagtacgtcatcaagacttttaatttttatatattcccaaagccgttcaacagaacctcc
ccagacaccaagttcatctgccagagttccagcatagacttcctggccagtcagggtttt
gacttcaacaaagtgttccgtaacgggatcccgtacctgaaccaggaagaggaagtgcag
ctgcgggagcagtatgaggagaggcggagtcagagtaacggatcaggaaacccctcctac
atctcccccaacccaaacaaaggccccggcagtgtccccgaggagcacagggagtacatc
ggacgggtggtagagaaggtggaatctctgttcactacctcagagaagactgtggacctg
gagccctgcactggctttcagaggaagctgatctaccagactctcaactccaagttccca
aagggccttcatgtggagaccttggagacagagaagaaagagcgatacatccagatcagc
aaggtggacgacgaggagaggaagaggaggcggcagaaacaggagagagaacaggaggag
ctgaatgacgctgtgggattctccagggtcatacacgccatctccaaatctggaaagttg
gtggttggccacaacatgctgctggacgtcatgcacaccatccatcagttctactgccta
ctgccagaggtacaaaacactgacctgaatgactttaaatacatctgctgtgtcagggtg
tgggtcttccccaggctgttggacaccaagctcatggccactacgcaacctttcaaggag
ttgatcaacatcacgtctcttgcagagctgcagaaacagctgaaagagagccccttcaaa
tctcctaaagttgtgacggcggaggggttccccagctacgatacagcccaggaacagctc
cacgaggcgggctacgatgccttcatcactggtctctgcttcatctccatggccaactac
ctaggtactttcctactccccagagttcacatcccatcccaatcgaaactcatccaaccc
tttttcgccagactgttcctgatgaggatcatagatattccctacctcaacatcagcgga
ccagatgtccagcccaagagggatcatgttctgtatgtcaccttcccgaaggagtggaag
accagtgacctctaccagctgttcagtgcctttggtaacatccaggtgtcgtggattgat
gacacgtcagcatttgtatctctgagtcagactgaccaggttcagatcgcgatgaacacc
agtcgctatgcggagagctaccgtatccagacgtatgtagagtatgtccagggcaggcag
caggtcagggagagccagggccattctacctcgtcctgggacgaggacggctgggttaaa
ccgcactacacctccccctctacagttggtgctggtcctactggctacagctacggtcac
aacaggccgtcgttggggaaacgctgcgtcagtccgatccaggaggagcagcctacagag
ggagaggctcagagacacgctgacggatggagtggttacacacactctaacacgcactct
gacacgggcagcaagaagatcaggaccgatggggtgtgtgtacggacgtatgcaggagta
gtggacagtaggacgtcagaaggctggctgaaaactcagtctgagtctgattcgtcgagc
atgagtccgatccaggaagaggcggggtcggcggcggtagacgacgctagtgatccggcg
gcgggcgaatggcaacagcaaccttcaaccaatcagagcaagaagagccgcaagaacaac
aggatgaggaagagtgatggtgcagagacgacgtcttctctgttcgacgtacctcaggtc
tggtag
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integrated database retrieval system
