Oncorhynchus gorbuscha (pink salmon): 124027532
Help
Entry
124027532 CDS
T07892
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124027532
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124027532
Enzymes [BR:
ogo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124027532
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124027532
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_bind
CAF1
RRM_Thc1
NCBP3
RRM_1
RRM_NFXL1
Motif
Other DBs
NCBI-GeneID:
124027532
NCBI-ProteinID:
XP_046195898
LinkDB
All DBs
Position
Unknown
AA seq
410 aa
AA seq
DB search
MLLDVMHTIHQFYCLLPEDLNDFKEVTQCVFPRLLDTKLMATTQPFKELINITSLAELQK
QLKESPFKSPKVVTAEGFPSYDTAQEQLHEAGYDAFITGLCFISMANYLGTFLTPPRAHI
PSQSKLIQPFVNKLFLMRIIDIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAF
GNIQVSWIDDTSAFVSLSQTDQVQIAMNTSRYAESYRIQTYVEYVQGRQQVRESQGHSTS
SWDEDGWVKPHYTSPSTVGAGPTGYSYGHNRPSLGKRCVSPIQEEQPTEGEAQRHADGWS
GYTHSNTHSDTGSKKIRTDGVCVRTYAGVVDSRTSEGWLKTQSESDSSSMSPIQEEAGSE
AVDDASDPAAGEWQQQPSTNQSKKSRKDNRMRKSDGAETTSSLFDVPQVW
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgctgctggacgtcatgcacaccatccatcagttctactgcctactgccagaggacctg
aatgactttaaagaagtcactcagtgtgtcttccccaggctgttggacaccaagctcatg
gccactacgcaacctttcaaggagttgatcaacatcacgtctctagcagagctgcagaaa
cagctgaaagagagccccttcaaatctcctaaagttgtgacggcggaggggttccccagc
tacgatacagcccaggaacagctccacgaggcgggctacgatgccttcatcactggtctc
tgcttcatctccatggccaactacctaggtactttcctgactccccccagagcccacatc
ccatcccaatcgaaactcatccaacccttcgtcaacaaactgttcctgatgaggatcata
gatattccctacctcaacatcagcggaccagacctccagcccaagagggatcatgttctg
tatgtcaccttccctaaggagtggaagaccagtgacctctaccagctgttcagtgccttt
ggtaacatccaggtgtcgtggattgatgacacgtcagcatttgtatctctgagtcagact
gaccaggttcagatcgcgatgaacaccagtcgctatgcggagagctaccgtatccagacg
tatgtagagtatgtccagggcaggcagcaggtcagggagagccagggccattctacctcg
tcctgggacgaggacggctgggttaaaccgcactacacctccccctctacagttggtgct
ggtcctactggctacagctacggtcacaacaggccgtcgttggggaaacgctgcgtcagt
ccgatccaggaggagcagcctacagagggagaggctcagagacacgctgacggatggagt
ggttacacacactctaacacacactccgacacgggcagcaagaagatcaggaccgatggg
gtgtgtgtacggacgtatgcaggagtagtggacagtaggacgtcagaaggctggctgaaa
actcagtctgagtctgattcgtcgagcatgagtccgatccaggaagaggcggggtcggag
gcggtagacgacgctagtgatccggcggcgggcgaatggcaacagcagccttcaaccaat
cagagcaagaagagccgcaaggacaacaggatgaggaagagtgatggtgcagagacgacg
tcttctctgttcgacgtacctcaggtctggtag
DBGET
integrated database retrieval system
