Oncorhynchus gorbuscha (pink salmon): 124028086
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Entry
124028086 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit-like
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03030
DNA replication
ogo03410
Base excision repair
ogo03420
Nucleotide excision repair
ogo03430
Mismatch repair
ogo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124028086
03410 Base excision repair
124028086
03420 Nucleotide excision repair
124028086
03430 Mismatch repair
124028086
03440 Homologous recombination
124028086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogo03032
]
124028086
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124028086
Enzymes [BR:
ogo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
124028086
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
124028086
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
124028086
MMR (mismatch excision repair)
DNA polymerase delta complex
124028086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
Motif
Other DBs
NCBI-GeneID:
124028086
NCBI-ProteinID:
XP_046196194
LinkDB
All DBs
Position
Unknown
AA seq
1104 aa
AA seq
DB search
MDAKRRNSGLPRGGASQAKRGKTAGDWEDSPSIFEEELALFEEADMEAEEREGQAGHDVI
PVGELFSADLNPRWRRPQATPLNPDSDTLVFQQIDLDYYLGAVVAGMPGQSQGNVPIIRM
FGVTDSGNSVCCHVHGFAPYFYIPAPNGFTSDHLSEFKRELNSAVLKDMRSNKDNISVTV
LAVDITRKESMYGYHGKRIADFLCITMAMPRLIAPAKRLLEQGFKFGPFPIQSFSSYEAN
IDFEIRFMVDSDVVGCCWIELPKGKYRVREERMLGETDAHHPAKVSLCQYEVDVGWTQLI
SHPAEGEYQRIAPLRVLSFDIECAGRKGIFPEAEKDPVIQIASMVQRQGEKEPFIRTVFT
LQSCSSIVGSQVLCFTKESQLLQSWAEFVRTVDADIITGYNIQNFDLPYLLNRAATLKVK
LFPYLGRVQGIKSVLRDSSFQSKQMGRRENKILNMEGRVQFDLLQVLLRDYKLRSYTLNA
VSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAYLPLRLLQKLMCVINYMEMA
RVTGVPLTYLLSRGQQIKVVSQLLRQAMKQGLVMPVVKPEGGEDYTGATVIEPEKGYYSV
PIATLDFSSLYPSIMMAHNLCYTTLLQKGSAEKLGLTPEDFIKTPTGDLFVKSSVRKGLL
PDILEDLLSARKKAKAELKKETDPFKKQVLDGRQLALKISANSVYGFTGAQVGKLPCLEI
SQSVTGFGRQMIEQTKQLVESKYTIANGYQADAKVIYGDTDSVMVKLGVDTVSRAMEVGR
EAAEWVSSHFTPPIKLEFEKVYYPYLLINKKRYAGLYFSSSADTHDKMDCKGIETVRRDN
CTLVANLINTCLQTILIDRDPQGAVAHAKEVISDLLCNRIDISQLVITKELTRTAQEYTA
KQAHVELAERMKKRDAGSAQLGDRVPYVIIKAAKGVAAYMKSEDPIYVLENNIPIDTQYY
LEQQLXKPLLRIFEPILGESKAESVLLKGDHTRCKTVLTSRVGGLMAFATKRSACIGCRA
VLKDDAAVCDFCKKKESELYQKEILHLSTLEERFSRLWTQCQRCQGSLHEDVLCTSRDCP
IFYMRKKVQKDLDDQEKLVSRFGW
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggatgctaaaaggcggaatagcggtctgccgaggggcggggcgtcccaggccaagcgt
ggtaaaactgccggggattgggaagacagcccgtccatcttcgaggaggaactcgccctg
ttcgaagaagccgatatggaggcggaggagagggaaggacaggcggggcatgacgtcatc
cctgttggtgagctgttctctgctgacctcaacccccgatggcgtaggccgcaggccacc
cctctgaacccggactctgacaccctggtcttccaacagattgacctcgactactattta
ggggctgttgtggctggcatgccaggtcagtctcaggggaatgttccaatcatccgcatg
tttggggtaactgacagcgggaacagtgtgtgctgccacgtgcacggctttgccccctat
ttctacatccctgcccccaatgggttcaccagtgatcacttgagtgagttcaaaagggag
cttaactctgctgtgctgaaggacatgcgctccaacaaggacaacatatcggtcactgtg
ctggcggtggacatcacacgcaaagaaagtatgtatggttaccatgggaaacggattgcg
gacttcctctgcatcactatggcaatgcctcgtctgattgccccggcgaagaggctcctg
gagcagggatttaagtttggacctttccccattcagagcttctcttcctacgaggctaac
atcgactttgagatcaggtttatggtggacagcgatgtggtgggttgctgctggattgag
ctgcccaaagggaagtaccgggtgagggaggagaggatgttgggggagacggacgctcac
cacccagccaaggtgtctctgtgccagtatgaggttgatgtgggatggacccagctgatc
agtcacccagcagagggagagtaccagaggatcgctcctctcagggttctcagctttgac
attgagtgtgctggaagaaaagggatttttccagaggcagagaaagacccagtgatccag
atcgcctccatggtgcagcgacagggagagaaggaacccttcatccgcaccgtcttcacc
ctccagtcctgctccagcatcgtgggctcccaggtcctgtgcttcactaaagagagccag
ttactacagagctgggctgagtttgtgaggacagtggatgcagacatcatcactgggtac
aacatccagaactttgaccttccctacctgctgaacagagcagctaccctgaaggtcaag
ctgttcccctacctgggcagagtacagggcatcaagtcagtcctgagagactccagtttc
cagagcaaacagatgggccgcagagagaacaagatcctcaacatggagggacgagttcag
tttgacctgctccaggtgctgctgagggactacaaactgcgctcgtacacactcaacgcc
gtcagcttccacttcctgcaagaacagaaggaggatgttcagcattctatcatcacagat
ctgcagaatggtaatgagcagacccggaggcgcctggcggtgtactgcctgaaggatgcc
tacctgcccctgcgtctgctgcagaagctgatgtgtgtgatcaactacatggagatggcc
agagtcaccggggttcccctcacctacctgctctccagaggccagcagatcaaagtggtg
tcccagctactgcggcaggcaatgaaacagggtctggtcatgccagtggtgaagcctgag
ggaggtgaagactacactggagctacagtcattgagccagagaaaggatactacagcgtc
cccatcgccaccctggatttctcctctctgtacccctccatcatgatggcccacaacctc
tgttacaccaccctgcttcagaagggctcagcggagaagctgggtctgaccccagaggac
ttcatcaagactcccacaggagacctgtttgttaagagctcggtgaggaagggacttctg
cctgatatcctggaggacctgctctctgccaggaagaaggccaaagcggagctgaaaaag
gaaacggatcctttcaagaaacaggtcctcgacggtcgacagctcgctctcaaaatcagc
gccaactccgtctatggctttacaggggctcaggtgggcaagctgccctgccttgagatc
tcacagagtgttactgggtttggcagacagatgattgagcagaccaaacagctggtggaa
tccaagtacaccatcgccaacggttaccaagccgatgccaaggtcatctacggggacacg
gactccgtcatggtcaaactgggcgtggacactgtgagcagggccatggaggttgggagg
gaggcggcagagtgggtctcctcccacttcacccctcccatcaaactggagtttgagaag
gtgtactacccctatctgttgatcaacaagaagcgctacgcaggcctctacttctcctcc
agcgccgacactcacgacaagatggactgcaagggtatcgagacggtccgcagagacaac
tgtaccctggtggccaatctgatcaacacctgcctgcagaccattctgatagaccgagat
ccccagggtgcggtggcccacgccaaagaggtcatctctgacctgctgtgtaaccgcatc
gacatcagccagctggttatcaccaaggagctgacccgcacagcccaggagtacactgcc
aagcaggcgcatgtggaactggccgagaggatgaagaagagagacgcgggtagcgcccaa
ctgggagacagagttccctatgtcatcatcaaagctgccaaaggagtagcagcatacatg
aagtctgaggatccaatctatgttctggagaacaacattcccattgacacccagtactac
ctggaacaacagctcntcaagccactgctccgcatctttgagcccatcctgggagagagc
aaagcagagagcgtcttactgaagggggatcacacgcgctgtaagacagtgttgacctcc
agggtgggggggctcatggccttcgccaccaagaggagcgcctgtatcggttgcagagca
gtgctgaaggacgatgcggctgtgtgtgatttctgtaagaagaaggagtctgagctgtac
cagaaagagatcttacacttaagtactctggaggagcgcttctctcgcctgtggacacag
tgtcaacgctgtcagggctcactccatgaggatgtgctctgtaccagccgggactgtccc
atattctacatgaggaagaaggtgcagaaagatctggatgatcaggagaagctggtgtct
cgctttggatggtga
DBGET
integrated database retrieval system
