Oncorhynchus gorbuscha (pink salmon): 124029386
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Entry
124029386 CDS
T07892
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1-like isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogo01009
]
124029386
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124029386
Protein phosphatases and associated proteins [BR:
ogo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124029386
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
124029386
mRNA cycle factors
Stress granule specific factors
124029386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
124029386
NCBI-ProteinID:
XP_046197063
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All DBs
Position
LG03:26266945..26274869
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AA seq
704 aa
AA seq
DB search
MFQCPGNSMSSAAASPMQQLSQPQPGYSIPCASSPLPSESASHPLRSSALPLGSATPFSP
TSTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHWEAE
GTSIKKAQHSAAATALAQTTMPKPSMRNNTRNNTVDCMTQTVELNSLCMKLGMKPMYKPI
DPYPGMRPPSFNYNIRAPGPYQRSMQQYYYPFPPVGPVLYHMELNIGGQQFHGKGRTRQL
AKHDAASKALKTLQKEPILLQQLPEMNGEDTEENLNKSEISQVFEIALKRNMPVNFEVLK
EAGPPHMKSFMVRVAVGEFCGEGEGKSKKIAKKLAATAVLEELRRLPQLIPCVEKMQPAR
IKKKTKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYNMLTERGLPRRREFVMQVT
VCGQCAEGLGPSKKVAKKNAAEKMLELLGFKVPQPQPHKPALKTDEKVPLKKNGDGRKVT
FFEPGSVEESQSLGSKEEDYRLPFLSHQQLPAGILLMVPEVAQAVGASPSQGHQNKDYGP
RANPAKATLTAIIANELLYAGASLTAETILKSQNSVGHLVPHGPLTRPSELLSYLANVQG
LQVEYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALNILKILSELDQHQQ
QTNDRAGNAPLSGCGKQDMEGSDSLLIKQANSSTLGQQTLDGTV
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgttccagtgtccgggtaactctatgtccagcgctgctgccagccccatgcagcagctg
tctcagccccagccagggtacagcatcccctgtgcctcgagtcccctgccctctgagagc
gccagtcaccctctccggagctcagccctgcccttgggctcagccactcccttcagcccc
acctccacagtatctaacatggcaaaccctaaagagaagacccccatgtgtctggtgaat
gagttagcccgtttcaataagatccagcctgagtataagctgctctgtgagcaaggacca
gctcactccaagatcttctcagtgaggttatcgctaggggatcagcactgggaggcagag
gggaccagcataaagaaggcccagcactctgcagctgccacagccttggcccagactaca
atgcccaaacctagcatgaggaacaatacccgcaacaacacagtagactgcatgacgcaa
acggtggagctgaattccctctgtatgaagttagggatgaagcctatgtacaagcccata
gacccttaccctgggatgagaccacccagcttcaactacaacatcagggcaccggggcct
taccaacgctccatgcaacagtactactacccgtttcccccagtggggcctgtgctgtac
cacatggagctgaacatcgggggccagcagttccacgggaaggggcgtacgcggcagctc
gccaaacacgacgccgcctccaaggccctgaagactctgcagaaggagcccatactgctg
cagcagctgcctgagatgaatggagaagacactgaagagaacctcaacaaatcggaaatc
agccaggtgtttgagatcgcactgaagaggaacatgcctgtcaactttgaggttctgaag
gaggcaggtcctccccacatgaagagcttcatggtgcgtgtggcggtgggggagttctgt
ggtgagggcgagggcaagagtaagaagatcgctaagaagctggcagctacagccgtgctg
gaggaactgaggagactgccccagctgatcccctgcgtggaaaagatgcagccagcacgc
atcaagaagaagaccaagtccatcattaagctgcagaccagtccagaatatggccagggc
atgaaccccatcagcagactggctcagatccagcaggctaagaaagagaaggaaccagag
tacaacatgctgacagagagggggctgcccagacgcagggagtttgttatgcaggtgacg
gtgtgtggtcagtgtgcggagggcttgggccccagtaagaaggtagcaaagaagaacgca
gcagagaagatgctggagcttctaggtttcaaagtgcctcagccgcagccccacaaacct
gcgctcaaaacggacgaaaaggttccactgaagaaaaatggagatgggaggaaagtgacc
ttctttgagccaggctctgtggaagagagccagtcgctgggttccaaggaggaggactac
cgcctgcccttcctcagccaccagcagctcccagcaggcattctgctcatggtgcctgag
gtggcccaggctgtaggggccagccctagccaggggcaccagaacaaggactacggtccc
cgggccaaccctgccaaggccaccttgacagccatcatcgccaatgagctgctgtacgct
ggtgcctccctgaccgccgagaccattctgaagagccagaacagtgtgggtcatctagta
ccccatggacccctgaccagaccctctgaactgctcagctacttggccaatgtacaggga
ctgcaggtggaatacaaagacttccccaaaaacaacaagaatgaatttgtatcgctaatc
aactgctcctcccagccccccctcatcagccacggcattggcaaggacgtggagtcctgt
cacgacatggctgccttgaatatcctgaagattctgtcagagctggaccagcaccagcag
cagaccaatgacagggcagggaacgcaccactctctgggtgtggtaaacaggacatggag
ggcagtgactctctcctcatcaaacaggctaactcaagcaccttgggacaacagactctg
gatggcactgtctag
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