Oncorhynchus gorbuscha (pink salmon): 124031530
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Entry
124031530 CDS
T07892
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2 isoform X1
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ogo03009
]
124031530 (ighmbp2)
03012 Translation factors [BR:
ogo03012
]
124031530 (ighmbp2)
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124031530 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
124031530 (ighmbp2)
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
Other ribosome biogenesis factors
124031530 (ighmbp2)
Translation factors [BR:
ogo03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124031530 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
Viral_helicase1
DEAD
UvrD-helicase
nSTAND3
AAA_22
PIF1
AAA_16
ResIII
SLFN-g3_helicase
Helicase_RecD
ABC_tran
AAA_25
AAA_18
IstB_IS21
T2SSE
HEM4
AAA_31
AAA
SRP54
PhoH
NPHP3_N
DnaB_C
MeaB
UvrD_C_2
ATPase
ATPase_2
Flavi_DEAD
NTPase_1
Herpes_ori_bp
Motif
Other DBs
NCBI-GeneID:
124031530
NCBI-ProteinID:
XP_046198844
LinkDB
All DBs
Position
LG01:complement(1899557..1927662)
Genome browser
AA seq
1006 aa
AA seq
DB search
MEVECFVSKTLELLQEEREAEIEETKLWQENVSLKDLQSKGVCLLKLQIGSQSTGLYGRS
LLLLEPRKHMGVSVLPSNNFGPGDIVGLYDLDGCKPSSQLCTGVVTRISQSAVTVACEDS
PDGLNLDTDALYNLMKLANDVTYKRMKKALNTLNGYSSGPASDLISVLFGYSEPGSISQP
NDLSFLNSGLDESQRQAVSFALSQREVAVIHGPPGTGKTTTVVEIILQVVKRGQKVLCCA
GSNVAVDNLVERLAKAKAKVLRLGHPARLLESIQKHSLDAVLAHSDNTNIIADIRKDIDK
AFMGMKKMNDKRDRIHLKREVGELRKELRTREATAIAEVLKRADVVLATNTGANDGGPLK
NLPVDHFDWVVIDECAQALESSCWIALLRGRKCILAGDYKQLPPTIKSHTAASKGLSVSL
MERLILKYGDSVVRMLTVQYRMNSNIMTWASEQMYQGQLVAHSSVEKHLLRDLPGVASVE
ETSTPLLLIDTAGCGLSEMEVTDDQSKGNQGEVDIVELHIKALTEAGVKPKDIAVIAPYN
LQVDLLRQRLSARHPDLEIKSVDGFQGREKEAVVLTLVRSNRKGEIGFLAEDRRINVAVT
RARRHLALVCDTQTVQTHGFLKTLIDHMTQHGDVRTAFEYLQDIVPQNYTRDHRDTKSNN
TNATASCSTSNKQKGRGQAGSKVEPGHKRTSGGNKTQGGEPRTGSDPGTHSQARRSTPTE
EERRLTQIKYLEIKNQVEWFLQDPDQTELRFPSTLNSHDRLLVHQVAEELGLNHESQGEG
KDRCITVSRPPTGSNEAGEEEEQQAQEPAAVREEESVTAPPVGQPAADLKTLHLERMRRE
QKKREQKIEQEKHLDTIRTSGQTQTAKKTKAKGKPKKTKAGACEIAAAATADDDFDTLID
AVVKAERVCSFVKCKTLVIHLGQLCLFCNRQYCLGHHIPEVHGCGDQARANARMRISKEG
VLYAGSGHKDKSVDPNKKAYLHRKLDSKLKDMEKQRKTKPKESDNN
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggaggtggaatgctttgtgtccaagaccctagagctccttcaggaggagagagaagca
gagatcgaggagacaaagctatggcaggagaatgtctctctgaaagatctccagagtaaa
ggcgtttgtctcctgaagctgcagataggaagccagtcaactggcctttatggacgatca
ctcctccttctggaacccagaaaacacatgggcgtctctgtgctgcctagcaacaacttt
ggacctggagacatagtgggtctgtatgacctggatggctgtaagccgtcctcccagctg
tgtactggtgtcgtgacacgcatcagtcagtcagctgtcaccgtggcctgtgaggactcg
ccggacggactcaacctggacacagacgccttgtacaacctcatgaagctggctaacgat
gtcacgtacaaacgcatgaaaaaggccttgaacactctgaatgggtacagcagtggacca
gcctcggatttgatcagcgttctctttggctattcagaacctggctcgatatcacaacca
aatgatctgtctttcctgaacagtggtctggatgagtctcagagacaggcggtgtcgttt
gctctgtctcagagagaggtagctgtaatacacgggccaccaggcaccggcaagacaacc
actgtggtggaaatcatcctacaagtggtcaaacggggacagaaggtcctgtgctgtgcc
ggttctaacgtggccgtggataacctggttgagcgcctggctaaggccaaagctaaggtc
ctgagactgggccaccctgcccgcctgctagagtccattcagaaacactcgctagacgcc
gtcctcgctcacagtgacaacaccaacatcatcgctgacatacgcaaagacatcgacaaa
gcttttatggggatgaagaagatgaatgacaaacgagatcggatccacctgaagagggag
gtaggagagctgaggaaagagctgaggaccagggaagctacagccattgctgaggtcctc
aaacgtgctgatgttgttctagccactaacacaggtgctaatgatggtggccctctgaag
aacctacctgtagaccattttgactgggtggtgatcgatgagtgtgcccaggcgttggag
agctcctgctggatcgcgctgctccgaggcaggaagtgtattctggctggagattacaag
cagctgccacccaccatcaagtctcacacggctgcatctaaaggcctgtctgtcagcctg
atggagaggttgatcctgaagtatggcgactccgtagtcaggatgctgacagtgcagtac
cgtatgaacagtaacatcatgacctgggcctcagaacagatgtaccagggtcaactcgtc
gcacacagctcagtggagaaacacctgctcagagatctcccaggagtagccagtgttgaa
gagaccagcacccctctcctcctcatagacacagcaggctgtggacttagtgagatggag
gtgacagacgaccagtccaaaggaaaccaaggtgaggtggacattgtggaactgcacatc
aaagcgttgaccgaagctggggtgaaaccaaaagacatcgccgttattgccccttacaat
ctgcaggtggatctcctgcgtcagcgtctctcagcgcgacatcccgatctggagatcaag
tctgtagacggcttccagggtagagagaaggaggctgtggtgctgaccttggtcagatct
aacaggaaaggtgagatagggttcttggctgaagaccggaggatcaacgtggcggtgact
cgagccagacgtcacctggccctggtgtgtgacacgcagaccgtccagacccacggcttc
ctcaagaccctcatcgatcacatgacccagcacggcgacgtacgcaccgcctttgagtac
ctgcaggacattgtgccccagaactacaccagagaccaccgagataccaagtctaacaac
actaacgctaccgctagctgctccacctccaacaagcagaagggcagaggccaggctggg
agcaaggtggagccaggacacaagaggacctctggggggaacaagacccagggaggagag
ccccggacaggttcagatcccggcacacacagccaagccagacgttccacccccacagag
gaggagcggagactgacgcagataaaatacctggagatcaagaaccaggtggagtggttt
ctccaggacccagaccagacggagctacggtttccctcgaccctcaactcccacgaccgc
ctgctcgtacaccaggttgcagaggagctgggcctgaaccatgagagtcagggagaggga
aaggatagatgcatcactgtctccagacccccaacagggtctaacgaggctggggaagaa
gaggagcaacaagcccaagaaccagcagccgtccgggaggaagagagtgttacagcgcct
cctgtagggcaaccggcagcagatctcaagactttacatctggaacgaatgagaagggag
cagaagaagagagagcagaagattgaacaggagaagcatctagataccatccgtacatca
ggacagactcagactgctaagaagaccaaggcaaaaggaaagcccaaaaagaccaaagcg
ggggcctgtgagatcgctgcggctgcgacggcggatgatgattttgacaccctaatagat
gctgtggtgaaggcagaacgcgtctgtagttttgtcaagtgtaaaacgttagtaattcat
ctgggacaactctgtctgttctgcaacagacaatactgcctcggtcaccacatacctgag
gtccatgggtgtggagatcaagccagggccaatgccaggatgaggatcagtaaagaaggg
gttctgtatgctggtagtggacacaaggacaagtctgtagatcctaacaagaaggcctat
ctacacaggaagctggactccaaactcaaagacatggaaaagcaacggaagaccaaaccc
aaagagagtgacaataattga
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