Oncorhynchus gorbuscha (pink salmon): 124031538
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Entry
124031538 CDS
T07892
Symbol
prdm2b
Name
(RefSeq) LOW QUALITY PROTEIN: PR domain zinc finger protein 2
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo00310
Lysine degradation
ogo01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
124031538 (prdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124031538 (prdm2b)
03036 Chromosome and associated proteins [BR:
ogo03036
]
124031538 (prdm2b)
Enzymes [BR:
ogo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
124031538 (prdm2b)
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
124031538 (prdm2b)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
124031538 (prdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRDM2_PR
zf-C2H2
zf-C2H2_4
SET
zf-C2H2_6
zf-C2HE
zf-C2HC_2
zf-C2H2_jaz
zf-C2H2_11
Motif
Other DBs
NCBI-GeneID:
124031538
NCBI-ProteinID:
XP_046198866
LinkDB
All DBs
Position
LG03:52657044..52673022
Genome browser
AA seq
1783 aa
AA seq
DB search
MHDISRKFSVKRITQSERKKVTMAVPEGTMETLADIPHHVWKSLPDGLRLSPSAVDQSRI
GVWASRSIPKGKRFGPFVGEKKKRSQVSSNVYMWEVYFPARGWMCVDATDPMKGNWQRYV
NWANSTQEQNLFPIEINRAIYYKVLRPIGPGDELLLWYNGEDNPEITAALEEERGSSLSK
KNSPRAKRARRKLLEGARQAGLGAFRGPKQTGVTKPILKEMWNKEEGPNEEDERLSQSPG
PSKGTRESSPMGRNGLSQAQFISAAMRGEAEEDDEEEDPGDLQQPLSLTQQSAQSATEAE
PEERSEQPDLPLSHSSPVEEGPGSLHHHTETASSLPRAEPEADPDPDPDLEGDPHGEESH
PCQHCERHFSTKQGLERHTHIHATANQQTHTFKCRYCGKSFGSQVGRRRHERRHENGPKN
KGQRPGSLAGTATLLSPLGQAGGSSPDCGTVSGHYVVRGSPIPGGPMGSPEVVRKDPAAE
SDRPFIVDENGETKELHPCKYCNKAFGTHTNMRRHQRRIHERHLLPKGVRRKGMLLQESP
SQQQLHHLPEQSPSVSPPLVYVPSADTEDEGDREEYLVDIANNISENLSLYIDGKILSTS
SVSGCEVIEVDSSSAALFGLDAVVISPNQISHALKVDTRTCAVRQVSNLGQPMSKRRTST
PPLMPSPKMESETGSSSASSSSSTSSSSALLVGSVFPQSSDSLAFQKEKTIYLSPKLKQL
LQTQTDSQKPAIAMIAERHRLAPPLSVTSLPAASGRFKRRTASPSSPQLSPALKANGCMN
EAGGXSSYTLKVPNLETLGMSPAWSLSSKEERDTLSPSGKNGCSWSASRTGGNSCNQQPL
DLSSGISKRRDSFNKTPGEVVLDLSMSRKSTAESKGSPSPAQPPTKKKKPNTSMLEKVLM
NEYAGLNPAEEEGSSPLGSPDSQYTAGSGTGTASHSPSSNLPSESAHPSPPSLTPVTMNP
SSPCGSSLTSPTPPPPVLPTMPSPDCPTLISSLPVLSHKMSPRSIDQGEDEPVCVSNSTT
AETMLAAVSNSYGDEEHINKPIDSNPDPLTREAISSPSTEPSLVSDAVALSLSSTQSKPA
RTENQLDVQVNQDLEPIITEGQEKSQCSELPVLSSVTESLLSASSTSPAAISDIPAPPAV
SPPSLSSTVIKGDPQHSEQLADLVLSPSGTGSSPLSAAADKPSSLSEEEEGSPPEPFSKS
FVCNVCEDPFRAIKELSRHILEHAAEWPYKCEFCVQLFGNAPALLEHRTALHGVGRVFVC
SVCSKEFAFLCNLQQHQKDLHPSQLCTHTAVENGKPRPQNYTDPARAKEESNPSSTVATG
PESSPEVASSQGVSDVKEEPDTNGKHEEDGLEYLTEELYTTIKIMASEGGKPKGPDVRLG
INQHYPSFKPPPFPYHNRTAAGSVASATHFTTHNIPQTFSTAIRCTKCGKSFDNMPELHK
HILACANASDKRRYTPKKNPIPLRQIVKPQNGSLSPASAANAGHNAFRRMGQPKRLNFNQ
EPLGKTKMSSLGKKKSQLVQKAIGQRNETAATVNKAPSQVKQEEPQEQEVHVCPHCSREF
TYPASLNKHIAGSCPMKPVSKKAKKGAATEATPAVDKNMSLRRRTTDSEIQQPELAEPVP
KTLSKTRARNSGPGPAEAEAPPPVGKGKMAATQVCTKRPASFPAATVSLGKKSKKGKVQS
LPPTPLPSESPSDSALRPAAQTKQRMGKEVPPKKGAEVKSPPQQQSQVPPKKEGERFSLR
ARERAVGPVTRSLQMANTAAPVEVKTDDLSSQEPEETQEYLLK
NT seq
5352 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacatctcgcgcaaattttcggtcaagcgcattacacaatcggaaagaaaaaag
gtgaccatggctgttcctgaagggacaatggaaacgcttgctgacattccacaccatgtg
tggaagagcttgcccgatggcctgagactaagcccctctgctgttgatcaaagtcgaatt
ggtgtctgggcctctaggtcgattcctaaaggcaagaggttcggcccttttgtaggagag
aagaaaaaacggtcccaggtgtccagcaatgtatacatgtgggaggtgtattttccagcc
aggggctggatgtgtgtggatgccacagaccccatgaaggggaactggcaacggtatgta
aactgggctaactccactcaagaacagaaccttttccccatagagataaaccgagccatt
tactacaaagttttacggccaattgggccaggggatgagctgctgttgtggtacaatggg
gaagacaaccctgagataacagctgcactagaggaagaaagaggcagcagtctgagcaag
aaaaattcacccagggcaaagcgagccagaagaaagctgttggagggagcaagacaggct
ggtttgggtgcattccgtgggcccaagcaaacaggcgtaaccaaacctattctcaaagag
atgtggaacaaagaggaaggtccaaatgaggaagacgagagactctcccaatcaccaggg
ccttccaaggggactcgggagagctcccccatggggaggaacggcctctctcaagcccag
ttcatctcagcagcaatgagaggggaagcggaggaggatgatgaagaggaagacccaggg
gatctgcagcagccgctgtcactgacacagcagagtgctcagtctgctactgaagctgag
ccagaggagaggagtgagcagcctgatctgccactaagccatagcagcccagttgaggag
gggcctgggagccttcatcatcacactgagactgcatcatccctaccaagggctgaacca
gaggcagaccctgaccccgaccctgacctggaaggtgacccccacggagaggagtcccat
ccctgccagcactgcgagcgccatttctccaccaaacagggcctggagcgccacacacac
atccatgccaccgcaaaccagcaaacgcacacgttcaaatgccgttactgtggcaagtcc
ttcggctcgcaggtggggcgtcggcggcacgagcggaggcatgagaacgggccaaagaac
aaaggccaaaggcctggctcactagctgggactgcaactttactctctcctctggggcag
gctggtggttcgagcccagactgtggcaccgtctctggccactatgttgtcaggggctcc
cctatccctggaggacctatggggagccctgaggttgtgaggaaggaccctgcggctgag
agtgaccggccgtttatcgtggatgagaatggtgagacaaaggagcttcatccctgcaag
tactgtaataaggctttcggcactcacaccaacatgcgcagacaccagcgcagaatccac
gagcgccacttactgcccaagggtgtccgcaggaaaggcatgctgctgcaggagagccca
tctcagcagcagctgcatcatctgcctgaacagtcccctagcgtcagcccacccctcgtc
tatgtgcccagtgcagacactgaggatgagggggaccgagaggagtacctggtcgacata
gccaataacatctcggagaatctcagcctgtacatcgacggcaagatcctgtccactagt
tcagtcagtggctgtgaggtgatcgaagtggactccagttctgcagcactgtttggtctt
gacgcagtggtcatcagccccaatcagatcagtcatgctctcaaagtggataccaggaca
tgtgctgtgaggcaggtctcgaatctcggccagcccatgtcgaaaaggagaacgtcgaca
cccccgctcatgccaagtcctaaaatggagtctgaaactgggtcctcttccgcctcctct
tcctcctccacgtcttcctcatccgccttgttggtgggaagtgtcttccctcagtcctca
gactcattagcatttcaaaaggagaaaactatctatctgtctcctaagctcaaacagctc
ctccagactcagacagacagtcagaaacctgccattgccatgatagcagagaggcacaga
ttagctccccctctctccgttacgtctctgcctgcagcctcaggcaggttcaagagaaga
acagcttccccctcatctccacagctcagccctgcgctgaaagcaaacggctgtatgaac
gaggcagggggtnnctcgtcgtacaccctcaaggtgccaaatctggagaccctgggcatg
tcccctgcctggagtctgtccagcaaggaggagagggacacactgagtcccagcgggaag
aacgggtgcagctggtctgcctctcggaccggagggaactcgtgtaatcagcagcccttg
gatctgtccagcggcatcagtaagaggagggacagcttcaacaagacgcccggggaggta
gtgctggatttaagcatgagtcggaagagtacagcggagtctaagggaagtccatctccg
gcacagccccccaccaagaagaagaagcccaacaccagcatgctagagaaggtgttgatg
aacgagtacgccggcttaaacccagcagaagaggaaggctcttctcccctgggaagccca
gattctcagtatactgcaggcagtggtacaggtaccgcatctcacagtccctcttccaat
ctgccctctgaatcagcccatccctctcccccctctctaacgcccgtcacgatgaacccc
tcctccccttgcggctccagcctaacctctccaacgccacccccccctgtcctacccacc
atgccctcaccagactgccctacgctcatcagctctctccctgtcctctcccacaaaatg
tcccccagatctatcgaccaaggtgaggacgagccagtttgcgtatcgaactctaccaca
gcagagacaatgttagctgcagtaagtaacagttatggagatgaggaacatatcaataag
ccaatagactctaatccagatccccttaccagggaagctatttcaagcccctctacagag
ccctccttggtatctgatgctgtcgctctgagtctgtcctcaacacaatcgaaacctgct
aggactgagaaccagctggatgtccaagtgaatcaagacctggaaccgattattactgag
ggacaggagaaatcccaatgctctgaactccctgtattatcatccgtaacagaatccctc
ctctctgcctcatcgacctcgcctgctgccatatcggatatcccagctccaccagcggtc
tccccgccatctctctctagcactgtgattaaaggggatccccagcacagtgaacagctg
gctgacttagtcctttctcctagtggcacagggtcttcacctctgtctgctgctgctgac
aaaccctcgtcgttgtcggaggaggaagagggatcgccgccagagcccttcagtaagagc
tttgtgtgtaatgtatgtgaggaccccttccgcgccatcaaagagctcagtcggcacatc
ctagagcacgccgctgagtggccctacaagtgtgagttctgtgtgcagctgttcgggaac
gcccctgctctgctggagcaccgcacggccctccacggcgtgggacgcgtctttgtctgc
tccgtctgctccaaggagtttgccttcctctgcaacctccagcagcaccagaaggacctg
catcccagccagctgtgcactcacacagcggtggagaacggcaagcccaggccacagaac
tacacagacccagccagggccaaagaggagagtaacccctcctcaaccgtagccacaggg
cctgagtcctctcctgaagttgcttcctcccagggggtctctgatgtgaaggaggagcct
gatactaacgggaagcatgaggaggatggactggagtacctaactgaagagctgtacact
actataaagatcatggcctctgagggaggcaagcctaaaggcccagacgtacgcctgggc
attaatcaacactaccccagtttcaagccaccccccttcccctaccacaaccgcactgct
gcaggctctgtggcctcggccacccacttcactacccacaacatcccccagacattcagc
actgccatccgctgcaccaaatgcggcaagagtttcgacaacatgcccgagctgcacaag
cacatactagcctgtgccaacgccagtgataagaggcggtacactcccaagaagaacccc
atccctctgagacagatagtgaagccccagaacggctctctgtcgcctgcctctgcagcc
aacgcagggcacaacgctttccgcagaatgggccaacccaagaggctcaacttcaaccaa
gaaccgcttggcaaaaccaagatgagttccctcggtaagaagaagagccagctggttcag
aaggccatcgggcagaggaatgagactgcagctactgttaacaaggcccctagccaggtt
aaacaggaggagccgcaagagcaggaggtccacgtatgccctcactgcagccgagagttc
acctaccctgccagcctcaataaacatatagcaggcagctgtcccatgaagccagtctct
aagaaggccaaaaagggagccgcaacagaggcaacaccagctgtagacaaaaacatgagc
cttcgacggagaaccacagactctgagatccagcagccagaactggctgagccggttccc
aaaacgcttagcaaaactcgggctcgcaactctggacctggccctgcggaggctgaggcc
ccaccaccggtaggtaaaggaaagatggctgccacacaggtgtgcaccaagaggccagcc
tctttcccagcagccacagtttctctcggcaagaaaagtaaaaaaggcaaagttcaatcg
ttaccccccaccccgttgccctccgagagtcccagtgactctgcactgcggccagcagct
cagacaaagcaacgcatgggcaaggaggtgccacccaagaagggagcggaggtgaaatcg
cccccacagcagcagtctcaggtgccgcctaagaaagaaggggaacggttctctctgaga
gcgagggagcgagctgtcgggccggtgacccggagcctacagatggccaacactgcagct
cctgtggaggtgaaaacagatgacctctccagccaggagcctgaagagacccaggagtac
ttgctgaagtga
DBGET
integrated database retrieval system
