Oncorhynchus gorbuscha (pink salmon): 124031738
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Entry
124031738 CDS
T07892
Name
(RefSeq) collagen alpha-1(II) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124031738
04518 Integrin signaling
124031738
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124031738
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124031738
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124031738
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
124031738
NCBI-ProteinID:
XP_046199306
LinkDB
All DBs
Position
LG03:66889708..66919319
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AA seq
1489 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLISIVRCQEEDDQEAGSCIQDAQRYNDKDVWKPEPCRICVC
DSGSVLCDEIICEEIRECANPIIQPRECCPICPADASAPTEAVIGAQGQKGEPGEIADVV
GPNGPAGPMGPSGEQGPRGEAGAKGDKGNVGPRGRDGEPGTPGNPGTPGPPGPNGPPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPA
GALGPQGPPGPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLD
GSKGEGGAAGAKGEGGAPGENGAPGPMGPRGLPGERGRPGASGSAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGSKGEAGPTGARGAEGAQGPRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPI
GPQGGPGPAGEEGKRGARGEPGTAGPLGPPGERGAPGNRGFPGQDGLAGVKGAPGDRGVP
GVGGPKGGTGDPGRAGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGAR
GQPGVMGFPGPKGANGVPGKAGEKGLVGRQGLIGLSGKDGETGAAGPNGPAGPAGERGEQ
GAAGPSGFQGLPGPAGPPGEGGKPGDAGVPGEAGAAGVTGPRGERGFPGERGGAGSQGLQ
GPRGLPGTPGTDGPKGAIGPTGGAGSQGPPGLQGMPGERGAGGILGAKGDRGDNGEKGPE
GAPGKDGSRGLSGPIGPPGPAGPNGVKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFA
GPPGADGQPGAKGEFGEAGQKGDGGAPGPQGPSGAPGPVGPTGVSGSKGGRGAQGGAGAT
GFPGAAGRVGSPGPNGNPGAAGPAGPAGKDGPKGVRGDAGTPGRQGDAGLRGVAGAPGEK
GDAGEDGPPGPDGPSGPHGLAGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGASGAGGDR
GPPGPVGPPGLSGPAGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAP
GPVGPLGKQGDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFT
GLQGLPGPPGSAGDQGAAGPAGPSGAKGPPGPAGPAGKDGSNGTPGPLGPSGPRGRSGET
GAAGPPGNPGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVD
STLKSLNYQIENLRSPDGSQKNPARTCRDIKLSHPEWKSGDYWVDPNIGSTADAIKVFCN
METGETCVYPSIASVPHKNWWTSKSKDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFL
RLLSTEASQSLTYHCKNSVAYMDASTGNLKKSLLLQGSNDVEIRAEGNSRFTYSVAEDGC
KKHTGQWGKTVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
atatccattgtcagatgccaggaagaggatgaccaggaggcaggcagctgcatccaggat
gcccaacgctataacgataaggatgtgtggaagccggagccgtgtcgtatctgtgtgtgt
gacagcgggtcagtgctgtgtgatgagatcatctgcgaggagatcagagagtgtgccaac
cccatcatccaacctagagagtgctgccccatctgccctgcggacgccagcgccccaact
gaggcggtgattggtgctcagggccagaaaggggaaccaggcgagattgcagatgttgtc
ggaccgaatggaccagcaggccctatgggcccctcgggcgagcagggaccacgtggagaa
gctggcgctaagggtgataagggaaatgttggccccagaggcagagatggcgagcctgga
acccccgggaaccccggaacccctggccctcccggacccaacggacccccaggtcttggc
gggaacttcgcggctcagatggctggtggattcgatgagaaagccggaggcgcacagatg
ggagtgatgcaaggacctatgggccctatgggtccccgtggtccacccggcccttctgga
gcccctggcccacaaggtttccaaggtaaccccggagagactggagagccaggccctgct
ggtgcactgggaccccaaggaccccctggaccttctggcaaaccaggaagtgatggtgag
gctggcaaacctggaaaggctggtgaacgtggacctgcaggacctcagggagctcgtgga
ttccccggaactcctggtcttcccggaatcaaaggacacagaggtcatcctggtctcgat
ggatctaagggagagggtggtgctgctggagccaagggcgagggtggcgctcccggagag
aacggcgcccctggaccaatgggaccacgtggtctgcctggcgagagaggccgtcccgga
gcttctggctctgctggtgcccgtggtaatgatggcttgcctggccctgctggtcctcct
gggcctgttggacctgctggagcacctggtttccctggatcccctggctccaagggagaa
gctggccccactggtgcccgtggagctgagggcgcacagggaccccgcggagaggctggc
acacccggatctcccggtcccgctggcgcctctggcaaccctggtactgatggtatcccc
ggagctaaaggatctgctggtgcttctggtattgctggtgcacctggtttcccaggaccc
cgtggcccccccggacctcagggagcaacaggacctcttgggcccaagggccagtcggga
gaccccggtattcctggtttcaaaggagaggctggacccaagggagagcttggccctatt
ggtccccaaggcggccctggccccgctggcgaggagggcaaacgaggagcaagaggagag
ccgggtactgctggaccacttggacctcctggcgagagaggagctcccggtaaccgtggt
ttcccgggtcaggacggtcttgctggtgttaagggagcccctggcgaccgtggtgttccc
ggcgtgggtgggcctaagggaggcactggtgaccccggccgcgcaggagagcctggtctc
cccggagccagaggtctcactggtcgccccggagatgctggtcctcaaggcaaagttggc
cctggtggtgctgctggtgaggacggtcgccccggcccacctggtcctcagggagcacgt
ggccagcctggtgtgatgggattccccggaccaaagggagccaatggtgttcctggcaag
gcaggagagaagggtctcgtgggtcgtcaaggtctgataggtctgtctggtaaagatggt
gagactggcgctgccggacctaacggccctgctggacctgctggagagagaggagagcag
ggagctgctgggccatctggcttccagggtctgcctggacctgctggccccccgggagag
ggaggcaagcctggtgatgcgggtgttcctggagaggctggtgctgcaggcgttacggga
cccagaggcgagcgtggtttccctggtgagaggggcggtgcaggatctcagggtctgcag
ggacctcgtggacttcctggaactcccggaaccgatggacccaagggagccattgggcca
actggtggtgctggatctcagggaccccccggcctgcagggtatgccaggagagagagga
gctggtggtatccttggagccaaaggtgacagaggtgacaacggcgagaaaggacctgag
ggcgctcctggaaaggatggctccagaggcttgtctggtcccattggtcctcctggccca
gctggtcccaacggcgtgaagggtgagggtggaccttctggcccaactggtgcggctggt
gcccgtggcgctcctggtgaccgtggtgagggtggtcctcctgggcctgctggcttcgct
gggcctcctggtgcagatggtcagcctggagccaagggagagtttggcgaggctggacag
aagggagatggtggtgcccctggacctcagggaccctctggggcccctggacctgtgggt
cccactggtgtttctggatctaaaggaggccgcggtgcccagggtggcgctggtgctact
ggcttccctggtgctgctggaagagttggatctcccggccccaacggtaaccctggtgct
gctggccccgctggtcctgctggtaaagacggtcctaagggagttcgcggtgacgctggc
accccaggaagacagggtgatgccgggctgcgtggagttgctggagcccctggcgagaag
ggagatgctggagaagacggcccccctggccctgatggtccttcaggtccccatggtctg
gctgggtctcgtggtattgttggtctgcctgggcagcgtggagagaggggcttccctggt
cttcctggaccgtctggagagcccggtaagcagggagcttctggtgctggtggtgaccgt
ggaccgcctggccctgtgggaccccctggactgtctggacctgcaggagagcccggaaga
gagggcaacgctggatctgatggaccccctggtagagatggatccactggagtcaagggt
gagcgtggtaacactggtcctgctggtgctcctggtgccccgggcgctcccggtgccccc
ggccctgtcggccccctgggcaagcagggagacagaggagagggaggtgctcaaggacct
gccggacccgctggaccagctggcgctagaggaatggctggaccccaaggaccccgtgga
gacaagggagaggctggcgagacaggagagaggggacagaagggacaccgtggcttcacc
ggtctgcagggtcttcccggacctcccggctccgctggagaccagggagctgctggacct
gccggacctagtggcgctaaaggaccccctggcccagccggtcccgctggtaaggatgga
tctaacggtacccctggacccctcggaccctctgggcctcgtggtcgttctggagagact
ggtgctgctggtcctcctggtaaccccggaccccctggtcctcctggtcctcccggccct
ggcatcgacatgtctgccttcgctggcctgtctcagccagagaaatctccggatcccctg
aggtacatgagggctgacgaggcatccagctccctgaggcagcacgacgtggaggtggac
tccacactcaagtccctcaactaccagatcgagaacctgcgcagccctgacggtagccag
aagaaccccgcccgcacctgcagagacatcaaactgtcccaccccgagtggaagagtggt
gactactgggtggacccgaacattggcagcacagctgacgccatcaaggtcttctgcaac
atggagactggcgagacctgcgtgtaccccagcatagccagcgtgccgcacaagaactgg
tggacaagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggagga
ttccacttcagctacgctgaggacggtaccaacgccgccagtatccagctgaccttcctg
aggctgctgtccacggaagcgtctcagagcctcacctaccactgcaagaacagcgtggcc
tatatggacgcatccacgggcaacctgaagaagtctctgctgctccagggctccaacgac
gtggagatccgagctgagggcaacagccgcttcacctacagcgtggcggaggacggctgc
aagaaacacacaggccagtggggcaagactgtcttcgagtacaaaacacagaagacctcc
cgtctgcccatcgtggacattgctcccatggacatcggaggagcggaccaggagttcggt
gtggacgtgggcgcagtctgcttcttgtaa
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