Oncorhynchus gorbuscha (pink salmon): 124031764
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Entry
124031764 CDS
T07892
Symbol
xpc
Name
(RefSeq) DNA repair protein complementing XP-C cells
KO
K10838
xeroderma pigmentosum group C-complementing protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
124031764 (xpc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124031764 (xpc)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
124031764 (xpc)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
BHD_3
Rad4
BHD_1
BHD_2
Motif
Other DBs
NCBI-GeneID:
124031764
NCBI-ProteinID:
XP_046199362
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Position
LG03:complement(68305865..68324702)
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AA seq
925 aa
AA seq
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MVNSVIHDSVCNTIKTKVHDYIWNEATMAKRKESADTAVKTDTKKPKKVAKGKAGGPRAK
KENGEETEKVQRKAKHKSRLSKPKVGDTAETNTSKYFQNETPVKEEPADMSPETDLIPPF
IRARKDTVKPVKEEEEEDSEEDEDWEEVEELSEPLGPVEPALPSQPVEIEIETPDIIHKR
QKREKRKAEFETYLRRMMNRFNKDVVEDTHKVHLMCLLANGMFRNRLCSTPDLLAISLSL
LPTHFTMVAKERIDTNYLSGLLKWFGATFTLNPELPCEERPDPQALLERRLGSLTARDHQ
EMTHLFLLVLRSLRLFCRLVLSLQPLSLKPPSAKSKAKNSGSPPRKSPSQKKPPKESPSE
PKVSPGSKRPAGGTAERGGKKAKKKEAGETEKAVSVVQKPKNSKRRSIASKVSYKEESSE
GEGPSDGEEFQLTSEEDSEDSEGGAKAIRAKKVKGGKSKSTAPQKISSGGKKKVKSEEED
DDWEGNEEEGEEEQGMKRGKRKEGKGADEWLEVYLEKTGCWVCVEVLQGVGQPQLCSKQA
THPMTYVVAVDGDGHLKDLGSKYDPTWMTSTRKRRVDEEWWEVTLEPFLGPESDRDVQED
KELQAKLLDKPLPTSIAEFKNHPLYALKRHLLKYEALYPSTAAILGYCRGEPVYSRDCIH
TLHSRDTWLKEARTVRLGEEPCKMVRGFSNRSRKVRMASEQKDKDDLALFGEWQTEEYQP
PVAVDGRVPRNDFGNVYLFKPCMQPVGCVHLRLPNLQRVAKKLDMDCAAAVTGFDFHGGY
SHAVTDGYIVCEEHEEILRAAWVEDQEIQRQKEKEKREKRAVANWTLLVKSLLIRERLQR
RYGKKGPTPAGGLDQLKSQDREGVEGLSSDEEGEGGPNTASAALAQAWPQNRQGEQDSGT
GGASKATSKRQKRGQEKHLFPFEKV
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggtaaactcagtcattcacgattctgtctgcaacactattaaaacaaaagtacacgat
tacatttggaacgaagcgaccatggccaagcgtaaagagtctgcagacacagcagtgaag
accgacacaaagaagccgaagaaggttgcaaaaggcaaagctggaggaccaagagccaaa
aaagagaatggagaggaaacggagaaggttcagagaaaagccaagcacaaatcccgtctc
tctaaacctaaagtaggggacacagccgaaacaaacaccagcaaatacttccagaacgag
actccagtgaaggaggagcctgctgatatgagtcctgagactgatctcatccctcctttt
atcagagccagaaaagacactgtaaagcctgtgaaagaagaagaagaagaggacagcgag
gaggatgaagactgggaggaagtggaagagctgtctgagcccttaggtccagtagagcca
gccctgccctcacagcccgtggagatagagattgagaccccagacatcatccacaagagg
cagaaaagggagaagaggaaggcggagtttgagacctatttgcgacgcatgatgaaccgc
ttcaacaaagatgtggtggaggacacacacaaggtccacctcatgtgtcttctagccaat
gggatgttccggaaccggttgtgtagcacaccggacctgctggccatcagcctgtctctg
ctgcccacccactttaccatggtggccaaggaacgcattgacaccaactacctctctggc
ctgctcaagtggtttggggcgacgttcacgcttaacccggagcttccctgtgaggagagg
cccgacccacaggccctgctggagaggaggctgggcagcctcaccgctagagaccaccag
gaaatgacacatctgttcctattggtgctgaggtcgttgcggctcttctgtcgactggtg
ctctctctgcagcccctgtcactgaagcccccgtcagccaagagcaaggccaagaactca
ggcagcccgcctaggaagagtccatcgcagaagaagcctccaaaagagagcccctcagag
cccaaggtatccccagggtccaagagaccggcaggggggacggccgagagaggagggaag
aaggcaaaaaagaaagaggcaggggagactgaaaaggctgtgtcggtggtacagaaaccc
aagaactccaagcgccgcagcatagcctcgaaggtgagctacaaagaggagagcagtgaa
ggggagggaccaagtgatggggaggagttccagctgaccagtgaggaagacagcgaggac
tctgagggaggagccaaagcaatccgagccaagaaagtaaaaggaggtaagagcaagagt
acagctccacagaaaataagtagtggaggcaagaagaaagtgaagagtgaagaggaggat
gacgattgggagggaaacgaagaggagggggaggaagaacaggggatgaagcggggcaag
aggaaggaggggaagggtgcagacgagtggctggaggtgtacctggagaagactgggtgc
tgggtctgtgtggaagtgctgcagggcgtggggcagcctcaactgtgctccaagcaggcc
acccatcccatgacctatgtggtagccgtggatggggacggtcacctgaaggatctgggc
agcaagtacgaccccacctggatgacctccaccagaaagcgccgggtggacgaggagtgg
tgggaggtgacgctggagccattcctcggccccgaatctgacagggacgtccaggaggat
aaagagctccaggcgaagttgctggacaagccgttgcccacgtcgatagcagagttcaaa
aaccacccgctgtacgccctgaagagacatctactgaaatatgaagctctctacccctcc
acagcggccatcctcgggtactgcaggggagagcctgtctattccagggactgtattcac
acgctacactcccgagacacctggctgaaggaggcgcgcactgtccgtctaggagaggag
ccctgcaagatggtgagagggttttccaatcgctctcggaaagtcaggatggcatcagag
cagaaggacaaagatgacctggctctgtttggtgaatggcagacagaggagtaccagccc
ccagtagctgtggatggcagggtgcctcgtaacgacttcggcaatgtttacctgttcaag
ccttgcatgcagccagttggctgtgtccacctgcgtctgcctaacctccagagggtggct
aagaagctggacatggactgtgcagctgctgtcactggctttgactttcacggtggctac
tctcatgctgtaacggacggctacattgtgtgtgaggagcatgaggagatcctgagagca
gcctgggtggaagaccaagagatacagagacaaaaggagaaggagaagcgggaaaagagg
gcagtggctaactggactctgctggtgaagagcctgctgatcagggagagactacagcgt
cgctatgggaagaaaggcccaacacccgcaggaggcctggaccaactgaagagccaggat
agggaaggggtagagggtctatcgtctgacgaggaaggggaaggtgggccgaacacggct
tctgccgcactggcacaggcctggcctcagaacagacagggggagcaggacagtggcacg
gggggagcctccaaagctacatccaaacggcagaaaaggggccaggaaaagcaccttttc
ccctttgagaaagtatga
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