Oncorhynchus gorbuscha (pink salmon): 124032402
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Entry
124032402 CDS
T07892
Symbol
hcfc1b
Name
(RefSeq) LOW QUALITY PROTEIN: host cell factor 1b
KO
K14966
host cell factor 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03083
Polycomb repressive complex
ogo04980
Cobalamin transport and metabolism
ogo05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
124032402 (hcfc1b)
09150 Organismal Systems
09154 Digestive system
04980 Cobalamin transport and metabolism
124032402 (hcfc1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
124032402 (hcfc1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogo01009
]
124032402 (hcfc1b)
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ogo03036
]
124032402 (hcfc1b)
03029 Mitochondrial biogenesis [BR:
ogo03029
]
124032402 (hcfc1b)
Protein phosphatases and associated proteins [BR:
ogo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124032402 (hcfc1b)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
NSL complex
124032402 (hcfc1b)
HMT complexes
COMPASS/SET1 complex
124032402 (hcfc1b)
MLL-HCF complex
124032402 (hcfc1b)
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
124032402 (hcfc1b)
Mitochondrial biogenesis [BR:
ogo03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
124032402 (hcfc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Kelch_3
Kelch_5
Kelch_4
Kelch_1
Kelch_6
fn3
Motif
Other DBs
NCBI-GeneID:
124032402
NCBI-ProteinID:
XP_046200737
LinkDB
All DBs
Position
LG03:complement(105074605..105146190)
Genome browser
AA seq
1805 aa
AA seq
DB search
MTSGTSGSVLQPRWKRVLGWSGPVPRPRHGHRAVAIKELMVVFGGGNEGIVDELHVYNTA
TNQWFIPAVRGDIPPGCAAYGFVCDGTRLLVFGGMVEYGKYSNDLYELQASRWEWKRLKP
KSPKNGPPPCPRLGHSFSLVGNKCFLFGGLANDSEDPKNNIPRYLNDLYTLELRAGSSVV
GWDIPITYGVLPPPRESHTAVVYTEKTSSKSRLVIYGGMSGCRLGDLWTLDIDTLTWNKP
SINGTAPLPRSLHSATTITNKMYVFGGWVPLVMDDVKVATHERXVCTNTLACLNLDSMAW
ESVLMDSLEDNIPRARAGHCSVAINSRLYVWSGRDGYRKAWNNQVCCKDLWYLETEKPRP
PSRVQLVRANTSSLEVSWGAVPTADTYLLQLQKYDIPPAPAATTPGVSPATSLPVNSPKS
PVTASAASPQGITLVPSPTTTMPGSPLAAANARGPAILKVSAPHSTTGTSIVTVRQANQG
GKSPVTVTSLPAGVRMVVPAQGAQGTPMGSSPQMSGMAALAAAAAATQKIPPSTATMQLP
AGATMVKTVAMSPGSQTVKVASPVMVSNPATRMLKTAAAQVGTSGVVTPGTPSRPIITVH
KSGTVTVAQQHQVVTTVVGGVTKTITLVKSPLTMGGGGTLLSNLSNLGKVMSVVQTKPGQ
TGAVTGQAGSSLQHIIQTKGPLPAGTILKLVTSADGKPTTIITTSQAGTAGGKPTILSYS
GMPTTTKPGTHIIKTIPMSAIGQAGVTGSGMKSPITIITTKMMTPGTGTPGKIISAMPRA
GAGQQGLTQVVLKGAPGQPGTILRTVPMGGVRLVSPVTVSGVKPNVTTLVVKGTTGVTTF
GTVTGTVSSSLAAGSVATATTTLGTMTTLPGQVTVSAAQAGAQPTQVTLITTPSGVDAQP
VHDLPVSILSSPTSADPSSTQPEAGDPGTVTLVCSNPPCETHETGTTNTATTASANMTGN
GGVERVCSNPPCETHETGTTNTQTTASSNMGQVQQVCTNPPSETHDTGTTNTQTTASCNM
GSNQQQQGSSVTNNTTCGSDPPSSPPPSSSGDLSPSSVSGTSSVPGVLRPETLRTGTTYT
STTARSNMGSDQMGMTLSSSSSDNQSKSSSGGGGGGSPLTSPVCSNPPCETHETGPTEAG
AGGRSATQVCSNPPCETHETGTTTTSTQANSSMGIGQTTGTVQRVCSNPPCETHETGTTN
TPSQTTSNLTGTGTVQRVCSNPPCETHETGTTNTATTAQPGDSTQGDNGTTEAPSSSSVT
TESSAVVAAGRAVTTVTQSTPTPGPSVPEISSMSGSSEAMVTACIEGEEAMQTDCLPEGT
VRVVTLEEAAAAGIQVHVEGMEEQNQGEQEGLPAELMSEGDAGDQQTLMVTGLTPEELAV
TAAAEEAAQHAAAEEANAQAMAIQAVLQAAQHTVMNEGDGGQEGQHQTTTIPIVLTQAEL
AALVHQQQQLQEAQALAQAAAAAQQQQHSTTRSVHRCFAFPTEGLAPADSLNDPASESNG
QELAAAVTQAVARLAPTCTMVVTNPAKTQPMMPMMVASPAKMQAAATLAEVANGIESAAG
RQGAPPAVAKAPVKKDNQWFDVGIVKVTNTVVTHYYLPTDDQATVDDDSGAIPDYSQMKK
MDLQPGTAYKFRVAGINTCGRGNFSEVSAFKTCLPGFPGAPCAIKISKSPDGAHLTWEPP
SVTSGKIIEYSVYLAIQSAQSGEQAKPTTTTTPAQLAFMRVFCGPNPSCLVQSSSLSNAH
IDYTTKPAIIFRIAARNEKGYGPATQVRWLQEVGKDGVAAKPTAKRPGSSPDMKAAGPKK
ARSDQ
NT seq
5418 nt
NT seq
+upstream
nt +downstream
nt
atgacatcagggacctctggctcggttctgcagccacggtggaagcgggtgttgggttgg
tccggccctgtccctcggccccgacacggacatcgtgcagttgcaattaaagaattgatg
gtcgttttcgggggtggcaatgaaggaattgtggatgaactgcatgtgtataacacagcc
accaatcagtggttcattcctgctgtccgtggcgacatcccgcctggctgtgctgcgtat
gggttcgtgtgcgacggcaccaggctgctggtgttcggagggatggtggaatatggcaaa
tacagcaacgatctgtatgaactgcaggccagtcgctgggagtggaagcgtctgaagccc
aagtctcctaagaacggccctcctccctgtccccgcctgggacacagcttctccctggta
gggaacaaatgcttcctgttcggaggactggctaacgacagtgaggaccccaagaacaac
atccccagatacctgaacgatctgtatacgttggagctgcgtgccggctccagtgtggtg
ggctgggacatccccatcacctacggggtgttgcccccgcccagagagagccacaccgcc
gtcgtctacacagagaagacctctagcaagtcccgtctggtcatctatgggggtatgagc
ggctgtcgactgggggatttgtggacactagatatagacaccctgacatggaataagccg
tcgatcaacgggacagctcctcttccccgcagtctccactctgccacaaccatcaccaac
aagatgtacgtgttcggaggctgggttcccctggtgatggatgacgtcaaagtagcaaca
cacgagagannggtctgcaccaacacactggcctgtctcaacctagactcgatggcgtgg
gagtcggtgctgatggattctctagaggataatatccccagggcccgagctggacactgc
tccgtggccatcaactcacgcctctacgtctggagcggacgggacggataccgcaaggcc
tggaacaaccaggtgtgctgtaaggacctctggtacctggagacagagaagccccgcccc
ccgtcacgggtgcagctggtgagagccaacaccagtagcctggaggtgagctggggggcg
gtaccaactgcagacacctacctgttacagctgcagaagtacgatatcccccccgccccg
gccgccaccacgcccggcgtcagccccgcgacgtcactaccggtcaactcccccaagagc
cctgtcacagcctctgcagcgtccccccagggcataacgctggtcccctcccccaccacc
acaatgcctgggagtccactggctgctgcgaatgcacgcgggccagctatcctgaaggtg
tctgctccccattcaaccacaggcacctccatcgtcacggtgaggcaggccaaccagggc
gggaaatctcccgtaacggtgacatcacttcctgccggggtccgcatggtggtgccggcc
cagggtgcacagggaacgccaatgggcagcagccctcagatgagtggcatggctgcgttg
gctgcagcggctgctgccacacagaagatcccgccctccacggccaccatgcagcttcca
gctggtgctactatggtcaagaccgtggccatgagccccggttcacagactgtcaaagta
gcctcgcctgttatggttagtaacccagcaacccgcatgctgaagactgctgcggctcag
gtgggcacgtcaggtgttgtcacacccggaactccttctcgccctatcatcaccgtgcac
aagtctggcacggtgacggttgcccagcaacaccaggtggttaccacggtagtgggagga
gtcaccaagacaatcacccttgtcaagagtccccttactatggggggaggtggaacactg
ctttctaacctgtccaacctggggaaggtgatgtccgtggtccagaccaagcctggtcag
acaggagcggtgacgggacaggctggctccagcctccagcacatcatacagacgaaaggt
cccctcccggcgggcaccatcctgaagctggtgacctcagcggacggcaagcccaccacc
atcatcacgacgtcccaggccgggaccgcggggggcaagcccaccatcctatcctacagt
ggcatgcccaccaccaccaagcctggcacgcacatcatcaagaccatacccatgtctgcc
atcggacaagcaggagtgacaggaagtggtatgaagtcccccattaccatcatcaccact
aagatgatgacaccaggcaccgggacaccaggcaagatcatcagcgcaatgcccagagct
ggggctggtcaacagggactcacacaggtggtgctgaagggtgcccctggacagcctggg
actattttacggaccgtccccatgggaggagtacgtctcgtctccccggttactgtttcc
ggtgtcaaacctaacgtcaccacccttgttgtcaagggaaccacaggtgtgacaacgttt
ggtacggtgactggtacagtgtcttcgagcctggcggccggaagtgttgccacggctacc
accaccttgggcaccatgaccactctgcctggacaggtcaccgtctccgcagctcaggcg
ggagctcagcccactcaggtgaccctgatcacgacccccagtggtgtggatgctcagcct
gtccacgacctcccggtctccatcctgtcctcccccacctccgccgacccctcgtccacc
cagcccgaggcaggcgacccagggacggtaaccctggtctgctcaaacccgccgtgcgaa
acccacgagaccggcaccaccaatacagctaccacggcctccgctaacatgactggtaat
ggtggggtggagagggtgtgttcaaacccgccgtgtgaaacccacgagaccggcaccacc
aacactcaaacgacagcgtcctccaacatgggccaggtacagcaggtgtgcaccaacccg
ccgtcagagacccacgatacaggtaccaccaacacccagaccacagccagctgtaacatg
ggctccaaccagcaacaacaaggctccagcgtaaccaacaacaccacctgcgggtctgac
cccccgtcctctccgcccccctcctcctccggagacctctccccctcgtctgtttctggt
accagctctgtgcccggggtgctgcgaccggagactctgagaacagggaccacctacacc
tcgaccaccgcacgctctaacatgggctctgaccagatggggatgaccctcagctcctcg
tcctcagataaccagagcaagtcatccagtggaggaggaggaggaggatcccccctcaca
tctcctgtctgttccaatccaccttgtgaaacgcacgaaactggccccactgaggccgga
gctggaggcagaagcgccacacaggtctgctccaatccaccttgtgaaacacacgagact
ggcacgaccactacgtcgacgcaggccaactccagtatgggcatcgggcagactacaggg
acagtgcagagggtgtgttccaatccaccgtgtgaaacgcacgaaacggggacgaccaac
accccgtctcagactacgtccaacctgacagggacgggcacggtccagagggtgtgttcc
aatccaccgtgtgaaacgcacgaaacagggacgaccaacacggctactacagcccagcct
ggcgactcaacacagggagacaacggaactacggaggctccttcgtcgtcctcggtaacc
acagagtccagcgccgtggtggcggctggccgagcagttaccacggttacccagtccaca
cccacacctggaccctccgtacctgagatctcgtcgatgtctgggtcgtctgaggcgatg
gtgactgcatgtatagagggagaggaggccatgcagacggactgtctcccagagggcaca
gtgagggtcgtgaccctggaagaggctgctgcagctgggatacaggtccatgtggagggc
atggaggaacagaaccagggggagcaggagggcctgcctgcggagctgatgtctgaaggt
gacgcgggggaccagcagaccctgatggtgacgggtttaacccccgaggagctggctgtt
accgcagcagccgaggaggcagcacaacacgctgctgctgaggaggctaacgcccaggcc
atggccatacaggctgtcctgcaggccgcacagcacactgtcatgaatgaaggagacggt
ggccaggagggccagcaccaaaccaccaccatccccattgtgttgactcaggctgagctg
gcagccctggtacatcaacaacagcagctgcaggaagcccaggctctggcccaggcagca
gcggcggcgcagcagcagcagcacagcacaaccaggtcagtccaccgttgttttgctttc
cccacagagggcctggccccagcagacagcctgaacgacccggcgtcagagagtaacggc
caggagctggctgcagcagtgacccaggcggtggcccggctagccccaacctgcaccatg
gtggtgacaaacccggctaagactcagcccatgatgcccatgatggtggccagtccggct
aagatgcaggcagctgcgaccctggcagaggtggctaacggcatagagtctgctgcaggg
agacaaggagctcctcctgcggtggccaaagccccggtgaagaaagacaaccagtggttt
gatgttggcatcgtcaaggtgaccaacaccgtggtcacacactactacttgcccactgac
gaccaagccactgtcgatgatgactctggggcgatcccggactacagtcagatgaagaag
atggacctccagccagggacggcctataaattcagagtggccgggatcaacacctgtggt
cgggggaacttctcagaggtctcggccttcaagacgtgtctaccgggcttccccggagct
ccctgtgctatcaagatcagcaagagcccagacggcgcccacctgacctgggagcctccg
tcggtcacatctggtaagatcattgagtactctgtgtacctggccatccagagcgcccag
agcggggagcaggccaagcccaccaccaccaccaccccagcccagctggctttcatgcga
gtgttctgtgggcccaacccttcctgcctggtgcagtcgtccagcctctccaacgcacac
atagactacaccaccaagcctgccatcatcttccgcatcgcagctcgcaacgagaaaggt
tacggccctgccacgcaggtcaggtggctccaagaggtaggtaaagatggtgttgcagct
aaaccaactgctaagagaccaggctcctcacctgacatgaaagctgccggtccaaagaag
gccagatcagaccagtga
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integrated database retrieval system
