Oncorhynchus gorbuscha (pink salmon): 124033136
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Entry
124033136 CDS
T07892
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
124033136
Enzymes [BR:
ogo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124033136
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
124033136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
GldM_1st
Peptidase_M19
Motif
Other DBs
NCBI-GeneID:
124033136
NCBI-ProteinID:
XP_046201042
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All DBs
Position
LG01:11570939..11907481
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AA seq
957 aa
AA seq
DB search
MCADCLNPCKDRESCRKVLNSGEMDNEPRMMKEEESDFDHRDVGICQKGCGLLLSHTDIV
QGDHCCLDALRMLNDGLQERSATMEHEGRMQRLRWGRREQSLLAQVSSIQSEAQLTALKY
KRKLHQYMLNINNITEQVIGHYKQPIQSNSGASGLCVSDPGPTDAVFGLQDLKEHGGVPE
VNHHNTVTQVNGKDLSKASHDEAVEAIRSAKDPIVVQVLRRNPVSRGGHVGSTQEVHVVD
VCTQTDITFEHIMALAKLRATTPPVPDICPFLLSDSCHSLHTMEQEFYEGTDYLSTLPDQ
QRTEEFEYEEVELCRLNSQEKLGLTLCYRTDEEEDMTIYVSEVGPNSIAARDGRIREGDH
ILQINGQDVQDRKEAVAVLSSEDTRKFVLLVARPEIQLEEAWLDDEHSEFLEQLKMEMLE
EQQREEMELEALQGKTKGEEDDITATCSSRTQDSGLGMSLRNSIDAPDHNALLSHIQRRL
SQCLRDRQDCPKRLDEEEEEEEEDVGEDGDRFQQLLELKCQIRNSGEYDLIYSRRSTIEC
RLGEPAGGVQRELRMLNDELRSIEIECQNIMQAHKLGKGPVGSQWNQGQQVFPQIVCPTP
KDQSSHLGCNDSPRRSKLVDINECPEKSDKDQSSSAYNTAESSRSTPLAMDRSPEHSLQR
RMVTITNQRNLRSSMASLHTTASPSPKHRPLHWAPIPGKASSPDHSLYPSESDKVAPADN
ERSGLGNWKVKPHPPPRTSQIPYLSPSHDSQHRQPNGNIPAHARHYQSYMQLIQQRSAAE
YAQSQLSLLSGVKEPQLSPAIEPKMEWKVKIRSDGTRYITKRPIRDKILRERALKIKEER
SGGMTTDDDAMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMQRSRLESLRESPQSSSEG
RKEVSIIELSHRKMMKKRNKKILDNWMTIQELMTHGAKAPDDPRAKVHKAFLSVTTV
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcggactgcctaaatccatgcaaggacagagaaagttgcagaaaggttttgaac
tcaggcgagatggacaatgagccgcgtatgatgaaagaagaagaatccgactttgaccac
agagatgttggtatctgtcagaaaggatgcgggcttctcttgtcccatacagacattgtc
cagggagaccattgctgtttggatgcgcttcgtatgctgaatgatgggctccaggagaga
agcgctaccatggagcacgaaggccgaatgcagaggctcaggtggggtaggagagagcaa
tccctcctcgcccaggtgtcttccatccagagcgaagcacagctgactgctttgaagtac
aagcgaaagttacaccaatacatgttgaatatcaacaacataaccgaacaggttattgga
cattacaagcagcctatacagagtaactctggggcctctggactctgtgtgtctgatccg
ggtccaactgatgcagtgttcgggctccaggacctgaaggagcatggcggggtaccagag
gtaaaccatcacaacactgtaacacaggtgaatgggaaggacctctccaaggccagtcat
gacgaggcagtggaggcgatccgctctgctaaggaccccattgtggtgcaggtgctcagg
aggaaccctgttagccgcggaggacatgttggctccactcaggaagtgcacgtggtggac
gtttgcacgcagacagacatcaccttcgaacacatcatggccctggccaagctccgagcc
accacccctcccgtgcctgacatctgccctttcctgctgtctgacagttgtcactctctc
cacactatggaacaggagttctatgaggggacagactacctctccaccctcccagaccaa
cagaggacagaggagtttgagtacgaggaggtggagctgtgtcgactcaacagccaggag
aagctgggcctgacgttgtgttacaggacagatgaggaggaggacatgaccatctacgtc
agcgaggttgggccaaacagcatcgctgcaagggatggacgcatcagagaaggagaccat
attttacagatcaatggtcaggatgtgcaggacagaaaggaggctgtagcggtgctctct
agtgaagatactaggaaattcgtactgctggttgccaggcccgagatacagctggaggaa
gcgtggttggatgatgaacacagtgaattcctggagcaactgaagatggaaatgttggaa
gagcaacagagagaagagatggagctagaggcacttcaggggaagaccaaaggagaagag
gatgacatcactgccacctgttcctccagaactcaggacagtgggctggggatgtcgtta
aggaacagcatcgacgcccccgaccacaatgccctcctatcccacatccaacggagactc
tcccagtgtctgagggacagacaggactgtcccaagcgtctcgacgaagaagaggaggag
gaagaggaggatgttggcgaggatggagatcggttccagcagctcctggagctgaagtgt
cagatccgtaacagcggcgagtatgacctgatctatagcagacgcagcactatagagtgt
aggctgggagagccggccggtggagtgcagcgtgagctccgcatgctcaatgacgagctc
cgtagcattgagatagagtgccagaacatcatgcaggcacacaagctcggcaaggggccg
gtggggtcccagtggaaccaggggcagcaagtgtttccacaaattgtctgccccacacct
aaggaccaaagctcccacctggggtgcaatgactcacctagaagaagcaagctggtggac
atcaacgagtgtccggagaagtcagacaaggatcaaagctcgagtgcctacaacactgca
gagagctctcgcagcacgccgctggcaatggaccgctcccctgagcactcccttcagagg
aggatggtgaccatcaccaaccagaggaacctccgcagcagcatggccagcctccacact
acagccagccccagccccaaacaccggcctctccactgggcccccatcccaggcaaggcc
agcagcccagaccacagcctttacccctcagagtcggacaaggtggcccctgcagacaac
gaaaggagtgggttggggaactggaaggtgaagcctcatcctcctcccaggacttcccag
atcccttacctatccccgtcccatgactcccagcaccgccagcccaacggcaacatcccg
gcccacgctcgccactaccagagctacatgcagctgattcagcagcgctcggctgcggag
tacgcccagagccagctgagcctgctcagtggggtcaaggagccccagttgagccccgcc
atcgagcctaagatggaatggaaggtaaagatccgttcggacggcacacgctacatcacc
aagagaccaatcagggacaagatcctgcgggaacgcgccctgaagatcaaagaggagcgt
agcggagggatgaccacggacgacgacgctatgtccgagatgaagatggggcggtactgg
agtaaagaggagaggaagcagcatctggtcagggctaaagaacagcggaggagacgagag
ttcatgcagcgcagccgactggagagcctgagggagagtcctcagagcagcagcgaagga
cgcaaggaggtcagcatcatcgaactgagccacaggaagatgatgaagaagcgcaacaag
aagatcctggacaactggatgaccattcaggaactgatgactcacggcgccaaggcccct
gatgaccccagggccaaagtacataaggccttcctgtcggtcaccactgtataa
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