Oncorhynchus gorbuscha (pink salmon): 124033436
Help
Entry
124033436 CDS
T07892
Symbol
samhd1
Name
(RefSeq) deoxynucleoside triphosphate triphosphohydrolase SAMHD1 isoform X1
KO
K22544
deoxynucleoside triphosphate triphosphohydrolase SAMHD1 [EC:3.1.5.-]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03250
Viral life cycle - HIV-1
ogo04623
Cytosolic DNA-sensing pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
124033436 (samhd1)
09150 Organismal Systems
09151 Immune system
04623 Cytosolic DNA-sensing pathway
124033436 (samhd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124033436 (samhd1)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
124033436 (samhd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_2
HD
SAM_1
PDEase_I
HD_assoc_2
Motif
Other DBs
NCBI-GeneID:
124033436
NCBI-ProteinID:
XP_046201426
LinkDB
All DBs
Position
LG04:84809021..84876500
Genome browser
AA seq
629 aa
AA seq
DB search
MDRRKRSREDLPTADSDHFNTPEERVYAGLSRDGDLRQWTVEDTCRYMRLEGLGIWEEKF
REQQITGVGLRYLTETHLENMGIGPLGTRLQILHCLRKLWQIAAETKVFNDPIHGHVEMH
PLLVRIIDTPQFQRLRHIKQLGGTYFVFPGASHNRFEHSIGVGYLAGSLVQELNERQPEL
FISHRDILCVQIAGLCHDLGHGPFSHMFDGMFIPKVRPESKWNHEEASLAMFDHLVCENA
LEPAMKEHGLVLPDDLVFIKEQIAGPQNTVPLSQGVSQPASEPWPYKGRPEEKSFLYEIV
ANKRNGIDVDKWDYFARDCFHLGIQNNFDYRRFLKFARVCEVDGKKHICTRDKEVGNLYD
MFHTRNCLHRRAYQHKVGNIIETMITEAFLKADPHIQIQGSGGKMFTISTAIDNMEAYTK
LTDHVFEQIMYSSSSELAEAREILQNITCRRLYKCVGQTQAEKRMEVSQEKLLDWAGCVA
RSRPQNDLQNVTLQPGDFVVNIINMDWGMKEKNPIDKVHFYCKNDPTKAYRIRKDQVSKL
LPERFAEQLIRVYCKKTDERTMEAAKKNFVQWCMDMNFSKPQDGDVIAPELTPLKASWAH
NNDNDEEDSQGGRGWAAVNGGEKAKTRLF
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggataggcgaaagcgctccagagaagatttaccgactgcggacagtgaccatttcaat
accccggaggagagagtttatgccgggctgtcgcgggacggggacttaaggcagtggact
gtcgaggacacatgcagatacatgcgtctggaagggctcgggatatgggaggagaaattc
agagagcaacagatcacaggagtggggttacgataccttacagagacacatctggagaat
atgggcatagggcctcttggcacacggctgcagattctgcactgcctgaggaagctgtgg
cagattgcagcagagaccaaggtgtttaatgaccccatccatggccatgtagagatgcat
cctctgctggtccgtatcatcgacacccctcagttccagaggctccgccacattaagcag
ctgggaggaacatactttgtcttccctggagcctcccacaaccgcttcgagcactccata
ggggtgggctacctggcaggttcgctggtccaggagttgaatgagagacaaccagagctc
ttcatctctcatagagacatattgtgtgtccagatcgccggtctctgtcacgacctgggt
catggtcctttctcccatatgtttgatgggatgttcattcccaaagtgcgtccagaatct
aagtggaatcacgaggaggcgtccctggccatgtttgaccacctggtgtgtgagaacgcc
ttggagccggcgatgaaggagcatggcctggtccttcctgatgacctggtcttcatcaag
gagcagattgctggaccacagaacactgtccccctcagccagggagtaagtcagccagcc
agtgagccgtggccatataagggccgaccagaggagaagtccttcctctatgagattgtg
gccaacaaaaggaacggcatcgatgtagacaagtgggactacttcgccagggactgcttc
cacctgggtatccaaaataactttgactaccgtcgctttctcaagtttgcccgtgtgtgt
gaggtggacgggaagaagcacatctgcacccgagacaaggaagtgggtaatctgtatgac
atgttccacacacgcaactgcctgcatagaagggcctaccagcacaaggtgggcaacatc
atagagacaatgatcacagaggcctttttaaaggcagacccccacatccagatacaaggt
tcagggggcaagatgttcaccatctccacagcaatagacaacatggaggcctacactaaa
ctcacagaccatgtgtttgagcagattatgtactcgtcatcctctgagctggctgaggcc
agagagatcctccaaaacatcacctgcagacgcctctacaagtgtgtgggacagactcag
gctgagaagcgaatggaggtttcacaggaaaagctcctggactgggcaggctgtgtggcg
aggtccaggcctcagaatgaccttcaaaatgttactctgcagccaggggactttgttgtc
aatatcatcaacatggactggggtatgaaggagaagaaccccatcgacaaagtgcacttc
tactgtaagaacgacccaaccaaagcttaccggatccgcaaggaccaggtgtccaagctg
ctgccagaacggtttgctgagcagcttatcagggtctactgtaagaagaccgatgagagg
accatggaggcagctaagaagaactttgtccagtggtgcatggatatgaacttctccaaa
cctcaggatggagatgtgattgcaccagagctcacccctcttaaggcaagctgggcacac
aacaatgacaatgatgaagaggatagccagggaggaagaggctgggctgcagtcaatggt
ggagagaaggcaaagaccagactcttttaa
DBGET
integrated database retrieval system
