Oncorhynchus gorbuscha (pink salmon): 124033566
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Entry
124033566 CDS
T07892
Name
(RefSeq) E3 ubiquitin-protein ligase AMFR-like
KO
K10636
E3 ubiquitin-protein ligase AMFR [EC:
2.3.2.36
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04137
Mitophagy - animal
ogo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124033566
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
124033566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
124033566
Enzymes [BR:
ogo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.36 RING-type E3 ubiquitin transferase (cysteine targeting)
124033566
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124033566
Multi subunit type E3
ERAD complex
124033566
LMBR1L-GP78-UBAC2 complex
124033566
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_SYVN1_N
G2BR
zf-RING_2
CUE
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_11
zf-rbx1
zf-ANAPC11
zf-RING_5
zf-RING_16
zf-C3HC4_4
Prok-RING_4
zf-RING_Vps41
zf_RING_Vps8
RING_XB3-XBAT31
FANCL_C
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
124033566
NCBI-ProteinID:
XP_046201573
LinkDB
All DBs
Position
LG04:5084917..5097501
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AA seq
632 aa
AA seq
DB search
MPLLFLERFPWPSLQTYTALSVALLAGSIFSAYTTVTEQGFGVPDMDEPLPPAPLVGDNR
GGLEHVTSDDVVGADTELATTVMWYLVTDSIFVWVLVNTAFCSLMLIAKMIQCMVFGPLR
VSEKQHLKDKFWNFIFYKFIFIFGVLNVQMVEEVVMWCLWFSALVFIHLMVQLCKDRFEY
LSFSPTTSMNSHVRVLTLLVSLLLGCCGLAVVCGLLGAAHGMHTLSFMAAECLLVTVRTG
HVIMRYTIHLWDLNHPGTWESKGSYVYYTDFIMELSMLSLDLMHHIHMLLFGNIWLSMAS
LVIFMQLRYLFHEVQRRIRRHKNYLRVINNMEARFAVATAEELVANNDDCAICWDTMQTA
RKLPCGHLFHNSCLRSWLEQDTSCPTCRMSLNISGDGGPARGQQQGAGLPLDNNLGPGGP
AADARPHLNQHNHFFHFDGSRIASWLPSFSVEVMHTTNILAIAQQANNSQLNTMAHQIQE
MFPQVPYHLVLQDLQLTRSVEVTTDNILEGRIVVPFPALAAERFPVQVNPAPEEGAGASG
GVDTAPRELNSLEVRGSRFSKSAEERQKMLLQRKDELLQQARRRYLRKSPEDEEDLPTLE
EDAPVSDVTMLRRRTMAAAAERRLQSQPDPAP
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgctattcctggagaggtttccctggcccagtctgcagacctacacagcgctg
agtgtggctctgctggctggaagcatcttcagcgcctacactactgtgacagaacagggg
tttggggttccagacatggacgagcctctaccacctgcacccttagtaggggataataga
ggcggcctagaacatgtgactagcgatgatgttgtgggtgcagatacagaattggcgacc
actgttatgtggtacctggtcactgacagtatctttgtatgggtgttggtgaatacagct
ttctgttccctgatgttaattgctaagatgatccagtgcatggtttttgggccccttcga
gtcagtgagaagcagcaccttaaggacaagttctggaacttcatcttctataagttcatc
tttatcttcggggtgctgaatgttcagatggtggaggaggtggtcatgtggtgtctgtgg
ttctctgccctggtcttcatccacctcatggtccagctgtgcaaggaccgctttgaatac
ctgtccttctctcccactacttctatgaacagccatgtgcgtgtccttaccctactggtg
tccctgctgctgggctgctgtggtctggctgtggtctgtggtctgctgggcgctgcccat
ggcatgcacaccctctccttcatggctgcagagtgtctgctggttactgtgcggactgga
catgtcatcatgaggtacaccattcacctgtgggatctgaaccacccaggcacctgggag
agtaaaggttcctacgtctactacactgacttcatcatggagctgtctatgctgtccctg
gaccttatgcaccacattcacatgctgctctttggtaatatctggctgtccatggccagt
ctggtgatcttcatgcagctgaggtatctgttccatgaggtgcagcgccgcatccgacgc
cacaagaactacctccgtgtcatcaacaacatggaggccaggtttgcagtggccacagcc
gaggaactggtagccaacaatgatgactgtgccatctgctgggacaccatgcagacagca
cgtaaactgccctgcggacacctcttccacaattcctgcctgcggtcgtggctggagcag
gacacgtcgtgtccaacatgcaggatgtccctgaacatcagcggtgatggaggcccggcc
agaggccagcagcagggggctggcctcccactggacaacaacctgggccctggaggcccc
gctgcagacgccagaccacacctcaaccaacacaatcacttcttccactttgatggctcc
cgcatcgccagctggctgcctagtttctcagtagaggtgatgcacacaactaacatcctg
gctatcgctcagcaggccaacaactctcagctcaacaccatggcccatcagatccaggag
atgtttcctcaggttccctaccacttggtgctgcaggacctgcagttgacccgctctgtg
gaggtcaccaccgacaacatcctagagggacgcatcgtggtgcccttccctgctctggcg
gctgagcgtttccccgtgcaggtgaacccagccccagaggagggggcaggagccagtggg
ggggtggatactgctcccagagagctgaacagcctggaggtcagagggagccgtttctcc
aagtctgcagaggagagacagaagatgctgctacagaggaaggatgagctgctgcaacag
gcacgcaggagatacttgagaaagagcccagaggacgaggaggacctgcccactctggag
gaagacgcccctgtctcagacgtgaccatgctgagacgcaggaccatggcagcagctgca
gagagacgcctgcagagccaaccagaccctgctccctga
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