Oncorhynchus gorbuscha (pink salmon): 124033596
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Entry
124033596 CDS
T07892
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124033596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124033596
03036 Chromosome and associated proteins [BR:
ogo03036
]
124033596
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124033596
Coactivators
SAGA/TFTC/STAGA complex
124033596
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
124033596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
124033596
NCBI-ProteinID:
XP_046201632
LinkDB
All DBs
Position
LG04:8456294..8528075
Genome browser
AA seq
963 aa
AA seq
DB search
MASTSDPLEDMLFSEVDEKAVNDLVGSLESQLVGQSNSADTQSENRDAGCTFTANHHLGK
TLPAQVGTTLVQQQQGQHKAGMHQDINSKEISLEKTVTSSSLSSIPSFEEASTTSGTGVN
ATKSGLQSHGTSSITTLPTFGGVATSPLVNSTTTSRGSALASGQTSTDIVDHPRKRITAS
LRSASAGIQSLNGTGGAVTSRNNPPAAGTAALISSASAANSSRTVDVTSCVNTTNLTLSN
SRIYSTQSAIPLDKGTPTIALQRLPSHIVASIAHNGNGTTVSALVKQGAIGSITSAAASQ
VNHKKEGSEAKSDAPVQSKIVMSSPLGVVNSVINSVSSPSAVSNIAAATTASHVMAKPAV
NVVGQTTTVGMVRSPAVATATQPLLRPGVPASQRTVAPQLIVRPPQQPQTTIQLPPGFTI
PPGMVLVRTEMGQLVMVPQQALAQAQAQAQAQAQNNISPRTATPTAGATFRATTLQAKMV
PFPSPTSSPVLQISSSTAQPSKGPMAPAVAVTAPQQAPVVMAPQVQAGAQAASQPALPPQ
TSVPVAPGASVISQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIE
PEEFTNRLQSELKSSPQPYLVPFLKKSLPALRLSLLNIQHSLIQPLPQAKATPTTGTSSA
IMAVPAVRGRLPNSGSTTGASVGAQGHTAALGIKQAGTAGCQVRMPMLITPLRTQGTVSK
GAMFQVGKSPVGFAVKGSGNQKNKQNDPGGGSFRDDDDINDVASMAGVNLNEESARILAT
NSELVGTHIRSCKDEAFLHPGLLHRRILETAKKFGVSEVPMEAVNFISHATQSRLRTVLE
KVSSIAQHRMDGGKDEEWFEQSADVRSQLKFFEQLERIEKQRKDEQEREILLKAAKSRSR
QEDPEQARLKQKAKEMQQQEMALVRQRDANLTALAAIGPRKKRKVNSPGATPSGTEVRPE
PPL
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcacctccgacccactggaagatatgttattttctgaggtggatgaaaaagct
gtgaacgatttagtgggctctttggagtcacaacttgttggacaaagcaactctgcagat
actcagtcggaaaacagagatgctgggtgtacattcactgcaaaccatcacttagggaaa
acgctaccagcccaagtgggtactacattagtacagcagcaacaaggacaacataaagct
gggatgcaccaggatataaactctaaagaaattagcttagagaaaactgttacatcttct
tcgctgagttctattccgtcctttgaggaagcttccaccacttcggggactggagtaaac
gctaccaagagcggtttgcaatcacatggaacatcatctatcacaacactacctacattt
ggcggtgtagcaacttctccgcttgtcaacagcaccaccaccagccgaggttccgctctg
gcttcaggtcagacatcaacagacattgtcgatcatccaagaaaacgtataactgcatcg
ttacggagtgcatccgcgggaatacagagtttgaacggtaccggaggagcggtaacgtca
aggaataatccccctgcagcgggaactgctgcgttgattagcagtgcaagtgcagcaaac
tcaagtcggaccgttgacgttacatcttgtgtaaatacgacgaatttgactttatctaac
tctagaatttattcaactcaatcagcgattcccctggataaggggactcctactattgct
ttgcaaagactaccaagtcacattgtagcgagcatcgcgcataatggaaatggcactacc
gtctcggccttggttaaacaaggcgcgataggatcgatcacttctgcagcagcttcgcaa
gtgaaccacaaaaaagagggttctgaagcgaagtcggacgctcccgtacagtccaaaata
gtcatgtccagtccgttaggtgttgtcaattccgtaataaactctgtttcctctccctct
gccgtttccaacatagcagcggcgactactgcaagtcatgtcatggcaaagcctgctgtc
aatgttgttggacaaacaacaactgttggaatggtaaggtcaccggctgtggccacagct
acacagcctctgcttcgaccgggagtcccagcatctcaaaggactgtagccccccagctg
attgtcagacccccccaacaaccacagacgaccattcaactgcctcctgggtttaccatc
ccacccggaatggtgttagtgcgcactgagatgggtcagctggtgatggtcccacagcag
gcccttgcccaggcacaggcccaagcccaggcccaggcccagaacaacatctccccccga
actgccacccccactgcaggggccaccttcagagcaactaccctacaggccaagatggtg
ccgtttccctctcccacttctagtcctgtcctccagatctcctcctccactgcccaacct
tctaagggccccatggcgccggctgtggcagtgacggctccccaacaggcccccgtggta
atggccccccaggtccaggctggggcccaggctgcctcacagccagccctgcccccacag
accagcgtccctgtagccccaggagcctctgtcatctcccaggagatgcaggagaatgtg
aagaagtgtaagaacttcttggccaccctgataaagctggcttcacacaactctccgtcg
cctgagacctccaaaaatgtcaagtcactggtccaggatctgctggatgctaagattgag
cctgaggagttcaccaacagactgcagtcagagctcaagtcgtctcctcagccctacctg
gtccccttcctcaagaaaagcctcccggccctgcggctgtctctgctcaacattcagcat
tccctgatccagcctctgccgcaggccaaagccacccccaccacaggcaccagctctgcc
atcatggccgtcccagctgtccgcggccgcctccccaacagcggcagcaccacgggggcc
agtgtcggggcccagggacacacagctgccctgggtatcaagcaagcgggcaccgctggt
tgccaggtcaggatgcccatgttgatcacaccattaagaacacaaggcactgtcagcaag
ggagccatgttccaagtaggcaaaagtcctgtgggttttgctgttaagggctctggaaat
cagaaaaacaagcagaacgatcccggaggcgggtctttcagggatgatgatgacattaac
gatgtggcgtccatggcgggggtgaacctgaatgaagagagcgctcgtatcctggcaacc
aactctgagctggtggggacacacatccgctcctgtaaagatgaggccttccttcacccg
ggcctgttacacagacgcatcctggagacagctaagaagtttggcgtgtcagaggttcct
atggaggctgtgaacttcatctcccacgctacccagtcccgactccgcactgtgctggag
aaggtctcctccatcgcacagcacaggatggacggtggtaaagatgaggagtggtttgag
cagtcggcagacgtgcggtcgcagctaaagttctttgagcagctggagaggatagagaag
cagaggaaggatgaacaggagagagagatcctactcaaagcagctaaaagtcgctccagg
caagaggacccagagcaggctcggctgaaacaaaaagctaaggagatgcagcaacaggaa
atggccctggtgaggcaacgagacgcgaacctgaccgcgctagctgccatcggacctcgg
aagaaacgcaaggtgaactcgccaggggccacgccgtcagggaccgaggtaagaccggag
ccccccctataa
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