Oncorhynchus gorbuscha (pink salmon): 124033598
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Entry
124033598 CDS
T07892
Name
(RefSeq) thrombospondin type-1 domain-containing protein 4-like isoform X1
KO
K23377
thrombospondin type-1 domain-containing protein 4
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
124033598
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ogo04990
]
124033598
Domain-containing proteins not elsewhere classified [BR:
ogo04990
]
Thrombospondin domain-containing proteins
ADAMTS-like proteins
124033598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP1_ADAMTS
TSP_1
ADAMTS_spacer1
ADAMTS_CR_3
TSP1_spondin
PLAC
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
124033598
NCBI-ProteinID:
XP_046201634
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All DBs
Position
LG04:complement(8875355..8923745)
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AA seq
1171 aa
AA seq
DB search
MRGLCIWILRVSMLLLLLRPNPLDCQLTTDHRKVPQRAEPQQQEAGGVQGGGPGSWGSWG
PWSSCSRSCGGGVQEQNRPCLPSYNPSMGAAAFPSRPGGHLPQHPNQNPGHVMSALRPTV
PLHRTNPGRPPPSNSNTSLARRGELRDQQRDREAHAGHRMGSDSPIIPGKYGYGRMPYVV
SLQTDKGQMSGIETGAGLSHRQRRSPLSDPSPSATRHGGHRPNPYRPPYNLHSYSPVYHQ
PPASQPRSNANPASPPRANPSPASQPRSNPNSNPNPAPQPRANPNSAPQHRSNPNPASQP
RANPNPASQPRANHNPASQPRANPNPAPQHRSNPNPASQPGANPNTNPNPAPQHRSNPNP
ASQPRVNSNPVPQPRYNPNPASQTRSNPNPASQPRANPNPAHQPRANPNLAPLPRANSNP
NPAPRPRSNPNSNPPWSSSLYQPSQGHQPRQEQQHSSSQASAAQQPFGQTYNPLPTSSCV
GEHNQYKICNTDACPPASRHIRAVQCSSYNSYPFMGRLYEWEPFNEVSGDQRCELNCRAI
GFRFYVRQSDKVIDGTPCGQNETSICVAGRCQSLGCDEYLDSGKVMDKCGVCGGDNMACK
LVSGLFQQHSLNKVGYHKIVEIPEGATKINVTETVKSRNYLALKSRSGRSIINGNWAIDR
PGKYEGVGTMFTYRRPNEVTSTAGESFLAEGPTNEILDVYVIYQQPNPGVSYEFILPSDN
PPQHPNYRPGGNTLHGQSGIDHRGNPNQEGYAPQVPNNQVPAVQPSKRQREYNWKLSGAT
DCSASCGRGSRYTIFRCVHRLSHEQVPENQCDSSTRPSSQEEPCNLQSCPAFWDIGEWSE
CSKTCGLGMQHRQVLCRQVYANRTLNVHTSRCRHLEQPETTSTCQLKICSEWQIRTEWSA
CSVPCGVGQRTREVHCVSNMGDFVSNEECNMKLQPSDNENCDMGPCAKSWFFTDWGNKCS
AECGMGIRTRGVLCLTNHISSLPLEGCGHERPTDSQVCNHGPCESRIEWFTAPWSQCSTE
CGSGSQQRAVVCLMKSDEGFNVMPPYECSSLDKPLNQQSCHLKPCGAMWYHTDWSACSKT
CEGGFRVREVRCLSDDMLSSKGCEEELKPVEREECNPEPCVPHIDENCRDKYFNCNVVVQ
ARLCVYDYYKTTCCASCTRVAHRQSQHRALS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaggggactttgtatctggattctgagagtttccatgcttctgctgctgctcaggcca
aatcccctggattgccagctcactacagaccacaggaaggttcctcaaagggcagagccc
cagcagcaggaggctggaggagtgcagggtgggggcccaggctcctggggctcctggggg
ccttggtcctcctgctcccgctcctgtgggggaggggttcaggaacagaaccgaccctgc
ctaccctcctacaacccctccatgggtgcagctgccttcccctccaggccaggtggccac
ctcccccagcaccccaaccagaacccaggccatgtcatgtctgccctaagacccactgtc
ccgctgcaccgcaccaatcctgggagacccccaccctccaacagcaacaccagcttggcc
cgccgaggcgagctgagggaccagcagagagacagagaggcccatgctggacacaggatg
ggcagtgacagtcccatcattccagggaagtatggctatgggaggatgccttacgttgtg
tctctccagacagacaaaggccagatgtctggaatagagacaggggctggtctttcccac
agacagagacgctccccactctctgaccccagcccatcagccaccaggcacggaggccac
aggccaaacccctaccgtccgccctacaatctccacagctacagcccagtctatcaccag
cccccagcctcccaacctaggtctaacgctaacccagcctcccctcccagggctaaccct
agcccagcctcccagcccaggtctaaccctaactctaaccctaacccagccccccagcct
agggctaaccctaattcagccccccagcataggtctaaccctaacccagcctcccagccc
agggctaaccctaacccagcctctcagcccagggctaaccataacccagcctcccagccc
agggctaaccctaacccagccccccagcataggtctaaccctaacccagcctcccagccc
ggggctaaccctaacactaaccctaacccagccccccagcataggtctaaccctaaccca
gcctcccagcccagggtgaactctaacccagtcccccaacccagatataaccctaaccca
gcctcccagaccaggtctaaccctaacccagcctcccagcccagggctaaccctaaccca
gcccaccagcccagggctaaccctaacctagcccctctgcccagggctaactctaaccct
aacccagcccccaggcccaggtctaaccctaattctaacccaccctggtcctcctcactc
taccagcccagccaggggcaccaacctaggcaggagcagcagcactcatccagccaggcc
tcagcggctcagcaaccctttggacagacctacaacccactgcccacctcctcctgtgtg
ggagagcacaaccagtacaagatttgcaacactgatgcctgtcctccagccagtagacac
atcagagcggtgcagtgttcttcctacaacagctatcccttcatgggtcgactgtacgag
tgggagcctttcaatgaagtttcaggggaccagcgttgtgagctcaactgtcgtgcgatc
ggtttccgcttctatgtgcgtcaatcagataaggtcatcgatgggacgccgtgcggccag
aacgagacttccatctgtgtggcagggaggtgtcagagtctgggctgcgatgagtacctg
gactcaggcaaggtgatggacaagtgtggggtgtgtggcggggacaacatggcctgtaag
ctggtgtcagggctcttccagcagcacagcctgaacaaggtgggctaccacaagatagtg
gagatcccagagggagccaccaagatcaatgtcaccgagacggtgaagagcaggaattac
ctggctctgaaaagccgctcaggtcgctccatcatcaatgggaactgggccattgaccgg
ccagggaagtatgagggggtgggcaccatgttcacctaccgacgacccaatgaggtcacc
agcaccgccggggagtccttcctggctgaagggccaaccaatgagatcctggatgtttat
gtgatctaccagcagcccaacccaggagtgagctatgaattcatccttccctctgacaac
cctccacagcaccccaactacagacctggagggaatactctgcatgggcaaagtgggatt
gaccaccggggcaaccccaaccaggaggggtacgctccccaggtacccaacaaccaggtg
ccagcggtccagccatccaaacgtcagagagaatacaactggaaactgtctggggcaaca
gattgtagcgcctcctgtggcagaggtagcaggtacaccatcttccgctgtgtccacaga
ctgagccatgagcaggtaccagagaaccagtgtgacagcagcaccaggcccagttcacag
gaggagccctgcaaccttcagtcctgccctgccttctgggacattggtgagtggtcggag
tgcagtaagacatgtggcctgggtatgcagcaccgccaggtcttgtgcaggcaggtgtat
gccaaccggaccctcaacgtccacaccagccgctgccgccacctggagcagcccgagacc
accagcacctgccagctgaaaatctgcagcgagtggcagatacgaaccgagtggagcgcc
tgctctgttccctgtggcgtgggccagaggaccagggaggtgcactgtgtcagcaacatg
ggagactttgtgtcaaacgaggagtgcaacatgaagctgcaacccagtgacaatgagaac
tgtgacatggggccctgtgctaaaagttggttcttcactgattgggggaataagtgttct
gctgagtgtgggatgggcatccggacccgtggcgttctgtgcctgaccaatcacattagc
agcttgcctctggaagggtgtggccatgagcgccccactgactctcaggtctgtaatcac
ggcccctgtgagagtcgcatcgagtggtttacagccccctggagtcagtgctcaacggag
tgtggctcgggcagccagcagagggcagtggtgtgtctgatgaagtctgacgaggggttc
aatgtaatgccgccctacgaatgttcttctctagacaagcctcttaatcagcagagctgc
cacctcaagccctgtggggccatgtggtaccacacagactggagcgcttgttctaagacg
tgtgaggggggcttccgtgtgagggaggtgcgctgtctgtctgatgacatgctttccagt
aagggctgtgaagaggagctgaaaccagtggagagagaagagtgcaacccagagccctgc
gtcccacacatagacgagaactgtcgagacaagtatttcaactgcaatgtggtggtccaa
gcacgtctctgtgtgtacgactactacaagacaacctgttgtgcctcctgcacacgagtg
gcccatagacagtcacaacacagggcactcagctag
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