Oncorhynchus gorbuscha (pink salmon): 124033760
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Entry
124033760 CDS
T07892
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124033760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124033760
03036 Chromosome and associated proteins [BR:
ogo03036
]
124033760
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124033760
Coactivators
SAGA/TFTC/STAGA complex
124033760
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
124033760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
124033760
NCBI-ProteinID:
XP_046201956
LinkDB
All DBs
Position
LG01:complement(16554211..16572325)
Genome browser
AA seq
997 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSNIKREGSTGAVSQFSGK
LRDQAGSLEPPQQGHPKAALNAEPIANQGMSNKIISASTSSITTGGVLNASTNLQTYGAA
SQTISTAPPGSVTLPAQSTSFNRGTILGPAGTSAATVPNPNITTTTTTIRTASPGLQSFN
GSTGALKLVNSPAAPQVGSGSSTVVSTVSAGNSNIIVSMTSQPPSLPNFTGPQQSAVATT
PTIALQRQPSPMAIASQNGVIDPKVSAVVTQGAGSLGATTSQVMNHSNTLMHTKMVAPNQ
PVSAGQSIILGGSPPPVVVNSPISQPQSVASPTLTAGVKPTVNGVGQPTVTIVRPPGAPV
MATPVQQQRPGLLASTTRTAAPQLAVRPPQKTTIQLPPGFTIPPGMVLVRTDTGQLVMVT
QQVLAQAQAKTQQGQAAVSNISPQPGIPTAGANIRVSTPSQAPGTPQAVRLASPFQARMA
QSPSPSSPTIQKAITVAPAGASVSVKMTTPQKAQSVITGGQALVKPGAVRPTITLNTAAA
SASGSPIATVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKSLVQDLLDAKIEPE
EFTASLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTSASALAVPSTSTIRPR
LPTTISPATGIVRSPTTALGVRRPGVQGVQTRMPMVITQTIRPQGVVTRGPSIIPGRSPV
GIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTKIRSC
KDEAFLPPGLLHRRIMEAAKRFGVTEVPAETVNYISHATQARLRSMLEKVSTIAQHRTDG
GKDEEWYEPSTDVRAQLRFFEQLERMEKQRKDEQEREVLLKAAKSRARQEDPEQARLKAK
AKEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGGSTSGTEVASGSGDGSSTAASSR
QQLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagct
gtaagcgacttagtgggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattctaatatcaagcgagaaggatctacgggcgctgttagccagttctcagggaaa
ctgcgtgatcaagcggggtctctggagccgccacaacaaggacacccaaaagcggcgtta
aacgcggaacccatcgcgaatcaggggatgtccaataagattatcagcgcttccacttct
tccatcactactgggggtgttttaaacgctagtactaatctacaaacatatggagccgca
tctcaaaccatttccaccgcaccaccaggatcggtaactttgcctgctcagtcgactagc
ttcaacagagggactattttgggtcctgctggcacatcagcggcgactgttcccaatcca
aacatcacaacaacaacaacaactatcaggactgcttcacctggtttacagagttttaac
ggtagcactggagctctgaagttggtcaactcgccagcagctccccaagtcgggtcaggc
agcagcactgttgtaagtactgtcagtgcgggcaattccaatatcattgtgtccatgact
tcacaacctccttctctgccaaacttcactggacctcaacagtctgcagtggctactact
cccactattgcattgcaaagacagcccagccccatggccattgcctcacagaatggagta
atagaccccaaggtttctgcggtggtcacacagggtgcaggttccctaggggccaccacc
tctcaggtcatgaaccacagcaacactctcatgcacactaaaatggtggcacccaaccag
ccagtctctgctggccaatcaataattctcggagggtctccccctcctgttgttgttaac
tcaccaataagccagccacagagtgtggcgagtcccactctcacagctggggtgaaacca
actgttaatggagttggtcagcccacagtgaccatcgtgaggccccccggtgctcctgtg
atggctacccccgtacagcagcagagacctgggctgttagcaagtaccacgaggactgct
gcaccacagctggccgtcagaccaccacaaaagaccaccattcagttaccccctggattt
accataccacccggtatggtgctggtgcgtacggacacgggacagctagtgatggtgact
cagcaggttctagcccaggcccaggctaagacccaacaaggccaggctgctgtctccaac
atctccccccagcctggaatccccaccgctggggccaacatcagagttagcactcccagc
caggcccctggtacgccccaggctgtccgtctggcgtcccctttccaggcaagaatggcc
cagtccccctctccctctagccctactatacagaaggccataaccgtggcacctgcgggt
gcgtctgtgtcagtgaaaatgaccacccctcaaaaggcccagtctgtgatcacagggggc
caggccttggtcaagcctggtgctgtacggcccactatcaccctgaacactgcagcagcc
agtgcctctggaagccctattgcaacagtctcccaggaaatgcaggagaatgtgaagaag
tgcaagaacttcctgtccaccctgatcaaactggcgtcccacaactccccctcccctgac
acatctaagaacgtcaagagcctggtgcaggatctactggatgctaaaatcgagcctgag
gaattcaccgcgagtctgcaggctgagctgaaatcctctccacagccgtacctcatcccc
ttcctcaagaaaagcctccctgccctgcggctgtcccttctcaacaaccagcagtctctt
ctggcctccacctccgcttctgccctggccgtgccctccacctccaccatcaggccccgg
ctccccaccaccatcagccccgccacaggcatcgtcaggtcacctaccactgccctgggt
gtgagaagaccaggggtccagggggtccagacccgcatgcccatggtcatcactcagact
atacgaccgcaaggcgtagttacaagaggaccctctattatcccgggcagaagtcctgtg
ggcattggtgcccaggcctctgccaatcagaagaagctgaatgagcctggaggtgggacg
ttcagagatgacgatgacatcaatgacgtggcgtccatggcgggggtaaacctgaacgag
gaaaacgcccgcatcatggccaccaactctgagctggtgggcaccaagatccgctcctgt
aaggacgaggccttcctcccgccaggcctgctgcacagacgcatcatggaggctgccaag
agatttggggtgaccgaggtcccagctgagacagtgaactacatctcccatgctacccag
gccaggctgagatccatgctggagaaagtgtccactatcgcccagcaccgcaccgacggg
ggcaaggatgaggaatggtatgagccatcgacagacgtcagggcccagctccgctttttt
gagcagctggaaaggatggagaaacagaggaaggacgaacaggagagagaggtcctactt
aaggctgccaagagtcgcgctagacaggaggacccagaacaagctcggttgaaggcgaaa
gctaaggagatgcagcaggcggagcaggcccagatccggcagcgtgaagccaacctcact
gccctggctgccatcgggccccgcaagaaacgcaagatggactcgccagggggctccaca
tcgggcacagaggttgcttcgggttcaggggatggctcttccacagctgcctcctcccgc
caacagctccgtcagcggatcacgcgagtcaacctcagggactttatcttctgcctggag
caggagagggccacatccaggtccttattgctttataaagctctcctgaagtag
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