Oncorhynchus gorbuscha (pink salmon): 124034012
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Entry
124034012 CDS
T07892
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124034012 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124034012 (msh3)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124034012 (msh3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
124034012
NCBI-ProteinID:
XP_046202582
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Position
LG04:complement(36156857..36296970)
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AA seq
1154 aa
AA seq
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MHETLYSQIICKMPKSIKKSCTTQTSISSYFGGLSSSAPDRNVQSGIIGNSVELCAGLKP
GPKGKHKHSPNNNNGGSLLKRAKLAHNGQEKEDMNCEVISWRVDEIRAPSSRGAGSLSSS
TLERLKGFVCPSEPQGRGPPGPGNAGGGSEDADGGPEDAGGRPGDVGNGCAHGGNGPGDV
GGREAVAHREMTGDKERQKSEEEEWRSPEPSSKNQALSLIQFAKPGEGRRRRGAVMKTPP
GVGGDVSVTSAPCGISKSGYTPLEQQYLQIKEQHKDALLAVECGYKYRFFGEDAEKAAKQ
LNIFCHLDHNFMTCSIPTHRLFVHVRRLVSQGYKVGVVKQTETSAIKASGANKNTLFTRQ
LSALYTKSTLVGEDVNPVHSLVDVEEGECDDVVTDPPESYLLCLSETWDKPRKQLTIGLV
AVQPSTGDVLLDCFVDGSTRCELEGRVLKVNPVEILVPSDLSDSSHRLLQSIVTASVQAG
DGVRIEKRESAQFDFASAMNTVTEFYCHTQDSSSRPLSSIASLESPVVCCLGPLIHYLTE
FNLQRVLLHHSSFRHLSCESDGMVLSAPTLRNLEILTNQTDGGMKGTLLWVLDHTHTSFG
RRLMRKWVSQPLKDAQSICERQGAVCEILESDSVTLPSVRALLFRLPDLERGVCSIYHKK
CSTQEFYLISSSLSRLGVELQALLPSIQSQLSSSLLRGLLLDTPELLAPAHNFLKVLNEK
AAKSGDKRELFCDLSGFPVLQERRVEIKSVLTEIQDHRREVRYTLRTPTLDYVRVSGQEF
LIEVKNSMVSVVPSDWVKISSTKAVSRYQSPYLIGRCRSLSQLREQLLIDSQKEWTNFLH
QFGEYYHTMKKAVGNLATVDCLFSLAEVAKQRNYCRPVLCEGDRQIVVRDGRHPVIDLLM
GEHTQYVPNNTELQGDGRRTLIITGPNMGGKSSYIRQVALVSIMAQVGSYVPATEARLGI
LDGIYTRMGASDSIYKGRSTFMEELTEASEIVSRATERSLVILDELGRGTSTHDGIAIAY
ATLEYFIRDVKSLTLFVTHYPPLCELEKVYPLHVGNFHMAFLLNEPDIATDDVEVQPEFI
TFLYQLTEGAAGQSYGLNVARLAEIPEAVLHIAARKAQELKNIVDARRKSKRLFAELWSI
DDRKALLDWVQLNS
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgcatgagactttatattcgcaaattatctgtaaaatgcctaaatcaatcaagaagtcc
tgcactacccagacatctataagtagctacttcggcgggttgagcagcagtgcccctgac
agaaacgttcaatccggtattatcggtaactctgttgagctatgcgctgggctgaaacca
ggacctaaaggaaagcataagcattctccgaataataataatggtgggtcgttattgaaa
cgagccaaattggcccataatggacaggaaaaggaggacatgaactgtgaggtcatatcc
tggcgtgtcgatgaaatcagggccccctcctctcgaggggcaggcagcctctcctcttcc
accctggagagactgaaggggttcgtctgccctagtgagccccaaggcagaggccctcct
gggcccgggaatgcgggtggcgggtctgaggatgcagatggtgggcctgaggatgcaggt
ggtaggcctggtgatgtaggcaatgggtgtgctcatggaggtaatgggcctggggatgta
ggaggtagggaggctgtggcccacagagaaatgactggtgataaagagagacagaaaagc
gaagaagaggagtggcggagtccagagccatcatccaaaaaccaggctctcagcctcatt
cagtttgccaagccaggagaaggaagaagaagaaggggggctgtaatgaagactcctcca
ggagtagggggtgatgtctctgtgaccagtgccccctgtgggatctctaagagtgggtac
actcctctggagcagcagtacctgcagattaaagagcaacataaagacgctctattggct
gtggagtgtggatacaagtacaggttctttggcgaggacgcagagaaagcagcgaagcag
ctgaacatcttctgtcacctggaccataacttcatgacgtgtagcattcccacacaccgc
ttgttcgttcacgtaagacgccttgtctcccagggctacaaggtgggcgtggtgaagcag
acagagacgtcggccattaaggcctccggagccaataagaacactttgttcacccgccaa
ctcagcgctctctacacaaagtctacactggtgggggaggacgtcaacccagtgcatagt
ctggttgatgtggaggagggggagtgtgatgatgtggtgacagatcctccagagagctac
ctgctctgtctcagtgagacctgggataaacccagaaaacaactaaccattgggctggtg
gcggtgcagcccagtacaggtgacgtgctgttggattgttttgtggacggctcaacgcgt
tgtgagctggaggggcgagtcttaaaggtcaaccctgtagagatcctggtgccctctgac
ctctcagactcctcccaccgactgctgcagagcatcgtcaccgccagtgtgcaggctggt
gatggtgtacgtatagagaagagggaaagtgcccagtttgactttgcctctgcaatgaac
actgtcactgagttctactgtcacacgcaggactcaagttctagacctctctccagtata
gcctctttggaaagtcctgtggtctgctgtctgggtcctctcatccactacctcacagag
tttaacctgcagagagtactactgcaccacagttcgttcaggcacctctcctgtgagtca
gacggtatggtcctcagtgctcccactctcagaaacctggagatactcaccaaccagaca
gatggaggtatgaagggcactttgttgtgggtgttagaccacacccacacctcatttggt
agaagactgatgaggaagtgggtaagccagcccctcaaagatgcacagtctatatgtgag
agacaaggtgctgtatgtgagatcctggagtctgattccgtcaccctaccctccgttaga
gccctgctcttccgactgccagacctggagagaggagtgtgcagcatctaccacaagaag
tgttccacccaggagttctacctcatcagcagcagtctttctcggctgggggtggaacta
caggctctgctcccatccatccaatcacagctcagctcctctctgctccgagggctccta
ttggacacacctgaactgctggctcccgctcacaactttctcaaagttctcaacgagaag
gcagccaagtcaggggataagagggagctgttctgtgacctatcgggcttcccagtgctc
caggagaggagagtcgagatcaaatcggttctgactgagatacaagaccaccggagagag
gtccgatacacactcaggacccccacactggactacgtcagagtcagtggacaagagttc
ttgatagaggtgaagaactctatggtgtctgtggttccgtccgactgggttaagatcagc
agtactaaggcagtgagtaggtaccagtctccgtacctgataggaagatgtaggagtctg
tcccagctcagagaacagctgctcatcgacagccagaaagaatggaccaacttcctacat
cagtttggggagtactaccacactatgaagaaggctgttggtaacttagcaacagtggac
tgcctgttctcattggctgaggtcgctaagcagaggaactactgcaggcctgtgttgtgt
gagggagaccgtcagatcgtggtcagggacggcagacatcctgtgatagacctactgatg
ggagagcacacacaatacgtccccaacaacacagaattacagggtgacgggagaaggact
ctgataataacaggccctaacatggggggtaagagctcctacatccgccaggtggcgcta
gttagcatcatggcccaggtgggatcatatgtaccagctacagaggcaagactgggcatc
ctggatggcatatacaccagaatgggagcgtctgacagcatctataagggccgaagcaca
ttcatggaggagctgacggaagcctcggaaattgtcagccgggcaaccgagaggtcattg
gtcatcctggacgagttggggcggggcaccagcacccacgacggtatagctatcgcctat
gctactctggagtacttcatcagagatgtgaagtctctaactctgtttgtgacccactac
ccacctctgtgtgagctggagaaggtgtatcctctgcatgtaggcaacttccacatggcc
ttcctcctcaatgaaccagacatcgccacagacgacgttgaggtgcagccagagttcatc
accttcctgtaccagctgactgagggggcggctgggcagagctatgggctaaatgttgcc
cgattggctgagattccagaagctgtactccacatcgccgcacgcaaagcacaggagcta
aagaacatcgtcgacgcccggagaaagagcaagaggttgtttgctgaactgtggagcatc
gacgacagaaaggctcttttggactgggtgcagctaaactcctaa
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