Oncorhynchus gorbuscha (pink salmon): 124034242
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Entry
124034242 CDS
T07892
Name
(RefSeq) transitional endoplasmic reticulum ATPase-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04137
Mitophagy - animal
ogo04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124034242
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
124034242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124034242
03009 Ribosome biogenesis [BR:
ogo03009
]
124034242
04131 Membrane trafficking [BR:
ogo04131
]
124034242
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124034242
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124034242
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124034242
Membrane trafficking [BR:
ogo04131
]
SNARE
SNARE associated proteins
Others
124034242
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124034242
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124034242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_5
AAA_33
AAA_2
TIP49
AAA_22
AAA_14
NPHP3_N
RNA_helicase
Vps4_C
nSTAND3
AAA_28
Parvo_NS1
Mg_chelatase
AAA_17
ATPase_2
IstB_IS21
AAA_7
AAA_18
ATPase
ABC_tran
DUF815
AAA_24
NB-ARC
TsaE
ResIII
Viral_helicase1
Sigma54_activat
NACHT
SLFN-g3_helicase
KAP_NTPase
Zot
DUF3944
Motif
Other DBs
NCBI-GeneID:
124034242
NCBI-ProteinID:
XP_046203104
LinkDB
All DBs
Position
LG04:complement(51837664..51847683)
Genome browser
AA seq
806 aa
AA seq
DB search
MASGGESKNDDLSTAILKQKTRPNRLIVDESINEDNSVVSLSQAKMDELQLFRGDTVLMK
GKKRRESVCIVLSDDTCSDEKVRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPID
DTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPNPYCIVAPDT
VIHCEGEPIRREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRG
ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNSPAI
IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDAALRRF
GRFDKEVDIGIPDATGRLEILQIHTKNMKLNDDVDLEQVANETHGHVGADLAALCSEAAL
QAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPNITWGDIG
GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFI
SIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNVGDGGGAADRV
INQILTEMDGMSSKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRINILKAN
LRKSPISKDVDLDFLAKMTNGFSGADLTEICQRACKLAIRECIENEIRRERERQTNPSAM
EVEEDDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFRFPSNAAGG
SGPSQGTGGTGGGPVFNEDNDDDLYG
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggaggagaatccaaaaatgatgatctttccactgcgattctgaagcagaag
accagaccaaacagattgattgtcgatgaatccatcaatgaggacaacagtgtggtctct
ctctctcaggcaaagatggatgagctgcagctgttccgtggtgacacagtgctgatgaag
gggaagaagcgcagggagtctgtgtgtattgtcctgtctgacgacacctgctctgatgag
aaggtccgcatgaaccgtgtggtccgcaacaatctccgtgtccgtctgggggatgtcatc
agtatccagccgtgtcctgatgtaaagtatgggaagaggattcatgttctgcctattgat
gacacagtcgaagggatcactggcaacctgtttgaggtctacctcaaaccctatttccta
gaggcctacaggcccatccgcaagggtgatatcttcctggttcgggggggtatgcgtgcg
gtggagttcaaggtggtagagaccgaccccaacccctactgcatcgtcgccccagataca
gtcatccactgcgagggagagccaatcaggagagaggatgaggaggagtccctgaatgag
gtgggctatgatgatatcggaggagtgaggaagcagctagctcagatcaaggagatggtt
gagctgcctctcagacaccctgcactgttcaaggctataggagtcaagcccccccgtggt
atcctgctatacggacctcccggtacaggaaagaccctgattgccagagctgttgctaac
gagaccggagccttcttcttcctcatcaacggtcctgagattatgagtaagctggctggg
gagagtgagagcaacctgaggaaggcctttgaggaggctgagaagaactctcctgccatc
atcttcattgatgaactggatgctatcgctcccaagagagagaagactcatggagaagtg
gagaggcgtatcgtgtctcagctgctgaccctgatggacgggctgaagcagagagctcat
gttatcgtcatggcagccaccaacagacccaacagcattgatgctgcacttagaagattt
gggcgttttgacaaggaggtggacattggtatccccgatgctacaggcagactggagatc
ctgcagatccacaccaagaacatgaaactgaatgatgatgttgaccttgagcaggtggct
aatgagacccatggccacgtgggtgctgatctggctgccctgtgctcagaggctgctctc
caggccatcaggaagaagatggacctcatcgacctggaggacgagaccatcgatgcggag
gtcatgaactcccttgccgttaccatggatgactttaggtgggctctaagccagagtaac
ccatcagctctgagggagacagtggtggaggttcctaacatcacctggggggacatcgga
ggactggaagacgttaagcgggagctgcaggagctggtgcagtacccagtggagcaccca
gataagttcctgaagttcggtatgactccttcaaagggagtgttgttctacgggcctccg
ggttgcggtaagaccctgctggccaaggccattgccaacgagtgccaggccaacttcatc
tccattaaaggacctgagcttctcaccatgtggtttggagagtcagaggctaacgtcagg
gagatctttgacaaggctcgccaggcagccccatgtgtgttgttctttgacgagctggac
tccatagcgaaggcccgtggaggtaatgtgggagacggtggcggtgcggccgaccgtgtc
atcaaccagatcctgactgagatggatggcatgtccagcaagaagaacgtcttcatcatt
ggagccaccaatcgccctgacatcatcgaccctgccatcctccgacccggccgtctggac
cagctcatatacatccctttgcctgacgaaaagagcaggatcaatattctcaaggctaac
ctccggaagagccccattagcaaggatgttgatctggacttcctggctaaaatgaccaat
gggttctcgggtgctgaccttacagagatctgccagcgggcctgtaagctggctatcaga
gagtgcattgagaacgagattcgccgagagagggagaggcagaccaacccctctgctatg
gaggtggaggaagatgaccctgtgcctgagatcaggaaggaccactttgaggaggccatg
cgattcgcccgccgctctgtcagcgacaatgacatccgcaaatacgagatgtttgcccag
acactgcagcagagccgaggatttggcagcttcaggttcccctccaatgctgcagggggc
agcggtcccagccagggtactgggggcactggtggggggccagtgtttaatgaggataat
gatgatgacctgtacggatag
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