KEGG   Oncorhynchus gorbuscha (pink salmon): 124034245
Entry
124034245         CDS       T07892                                 
Name
(RefSeq) THO complex subunit 5 homolog
  KO
K13174  THO complex subunit 5
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    124034245
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogo03019]
    124034245
   03041 Spliceosome [BR:ogo03041]
    124034245
Messenger RNA biogenesis [BR:ogo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     124034245
Spliceosome [BR:ogo03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    124034245
SSDB
Motif
Pfam: FmiP_Thoc5
Other DBs
NCBI-GeneID: 124034245
NCBI-ProteinID: XP_046203107
LinkDB
Position
LG04:complement(51878685..51900426)
AA seq 683 aa
MSDALKKRKSKVLRSETGTPEGKCGRGEGDQDIRVYSEEVELDGRDPEEDYQQYKLTCEA
LAKLMNDIQELKANGAKDGCVEVEEKRMQSCIHFMSLKKLNRLAHMRLKRGRDQTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSVDEFYQEAPPEISRTPLTKD
DPHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQEYLSMPFEQTQRQTEIARHLPPSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLKCKDGSV
LHLFNYYLMNLNIMTVKAKVSTATDLTGAISAGELLNSDTLLNCLYANDQGRETPNPANR
YQFDKVGISSFGDYVAELGHPYLWVQSLGGLQFPSDAPEGLRAGSSLSASHMESTMKLLR
GRVQSRLALHKQFSSLEHSIVPVSTECQHLFPAKVLSRLARWTTMSHQEYTNLSFTQHVS
DAGLARETDLFFMAVVERGTARLQAAVVLNPRYPEVSPLFALSLSWKGECSGRTDDNLRA
MESEVNVFKSELQGPRPGHQLLTNQVARLCVCLDVYLETDGQDDSVEGPREFLREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq 2052 nt   +upstreamnt  +downstreamnt
atgtctgacgccctgaagaagcgcaagtcgaaagtgctccgcagcgagacgggcacaccg
gaggggaaatgcggccgtggagaaggggaccaggacatacgtgtgtacagtgaggaggtg
gagctagatggcagggaccctgaagaggactaccagcagtataaactgacctgtgaagct
ctggctaaactgatgaacgacatccaggagctgaaagccaacggtgccaaggatgggtgt
gttgaggtagaggagaagaggatgcagagctgtatccactttatgagcctgaagaaactc
aaccgcctggctcacatgagactgaagagggggagagaccagacacacgagggcaagcag
agagtggatgtgttgcacctgcagctccagaacctgctctatgaggtcatgcacctgcag
aaggagatcagcaagtgtctggagttcaagtctaaacatgaggagatagatctggtgagt
gtagatgagttctaccaggaggccccccctgagatctcccgcacccccctcaccaaggac
gacccccaccaactcacactggccaggttggactgggaactggagcagaggaagaggctg
gctgagcagtacaaagagtctctgtccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctattatgcaggcatccctc
ccggttcaggagtacctgtcaatgccgtttgaacagacccagagacagacagagatcgcc
cgccaccttcccccctctctctacgtcctcctggtacaggccagcgcttacggacaggcc
tgcgataagagcctgagtgtgtccatcagtggagatgtggacgaggccaaagctctgtct
aaacctccagaggactcccaggatgatgattctggtgactctgatgcagaggaggagcag
gagaagacgaagaggaggcgacctactacaggtggtcagctggatgataagagacgtgag
atgctgaagagacaccctctctctctttgcctggacctcaaatgcaaagacggcagtgtg
ctgcatctgttcaactactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccaccgccacagacctcactggagccatcagcgcaggggagctgttaaattctgacacg
cttctcaactgcctgtatgctaatgaccagggccgcgagacacccaaccccgctaaccgt
taccagtttgataaagtggggattagttcgtttggagactacgtggcagagttgggtcat
ccctacctgtgggtgcagagtctaggaggactgcagttcccaagtgatgccccagagggt
ttgcgtgcaggcagttctcttagtgccagtcacatggagagcaccatgaagctgctgaga
ggacgagtccagtcccgcctggccctgcacaaacagttctcctcactagagcacagtata
gttccagtgtccacggagtgccagcacctgttccctgctaaggttctctcccgcctggct
cgctggacaaccatgtcacatcaggagtacacaaatctgtcgttcacgcagcacgtgtca
gatgcaggtctggctcgggaaacggacctgttcttcatggctgtggtggagagaggaaca
gctcgtcttcaggctgcagtggtgttgaacccccgttatccagaagtctctcctctgttt
gctctttcactcagctggaagggcgaatgcagtggacgtacagatgacaaccttagagcc
atggaaagtgaggtgaatgtgtttaagtcagagctccaggggccccgcccaggacaccag
ctgctgaccaatcaggtggctcgtctctgtgtctgtctggacgtatacctggagaccgac
ggacaagatgacagcgtggagggaccgcgggagtttctcagagagaagatgtgtctacgc
accgtaaggggtccgaaccgtctgaagccgttcaagtacaaccatccccagggcttcttc
agtcaccgctga

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