Oncorhynchus gorbuscha (pink salmon): 124034245
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Entry
124034245 CDS
T07892
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124034245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124034245
03041 Spliceosome [BR:
ogo03041
]
124034245
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124034245
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124034245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
124034245
NCBI-ProteinID:
XP_046203107
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All DBs
Position
LG04:complement(51878685..51900426)
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AA seq
683 aa
AA seq
DB search
MSDALKKRKSKVLRSETGTPEGKCGRGEGDQDIRVYSEEVELDGRDPEEDYQQYKLTCEA
LAKLMNDIQELKANGAKDGCVEVEEKRMQSCIHFMSLKKLNRLAHMRLKRGRDQTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSVDEFYQEAPPEISRTPLTKD
DPHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQEYLSMPFEQTQRQTEIARHLPPSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRREMLKRHPLSLCLDLKCKDGSV
LHLFNYYLMNLNIMTVKAKVSTATDLTGAISAGELLNSDTLLNCLYANDQGRETPNPANR
YQFDKVGISSFGDYVAELGHPYLWVQSLGGLQFPSDAPEGLRAGSSLSASHMESTMKLLR
GRVQSRLALHKQFSSLEHSIVPVSTECQHLFPAKVLSRLARWTTMSHQEYTNLSFTQHVS
DAGLARETDLFFMAVVERGTARLQAAVVLNPRYPEVSPLFALSLSWKGECSGRTDDNLRA
MESEVNVFKSELQGPRPGHQLLTNQVARLCVCLDVYLETDGQDDSVEGPREFLREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgccctgaagaagcgcaagtcgaaagtgctccgcagcgagacgggcacaccg
gaggggaaatgcggccgtggagaaggggaccaggacatacgtgtgtacagtgaggaggtg
gagctagatggcagggaccctgaagaggactaccagcagtataaactgacctgtgaagct
ctggctaaactgatgaacgacatccaggagctgaaagccaacggtgccaaggatgggtgt
gttgaggtagaggagaagaggatgcagagctgtatccactttatgagcctgaagaaactc
aaccgcctggctcacatgagactgaagagggggagagaccagacacacgagggcaagcag
agagtggatgtgttgcacctgcagctccagaacctgctctatgaggtcatgcacctgcag
aaggagatcagcaagtgtctggagttcaagtctaaacatgaggagatagatctggtgagt
gtagatgagttctaccaggaggccccccctgagatctcccgcacccccctcaccaaggac
gacccccaccaactcacactggccaggttggactgggaactggagcagaggaagaggctg
gctgagcagtacaaagagtctctgtccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctattatgcaggcatccctc
ccggttcaggagtacctgtcaatgccgtttgaacagacccagagacagacagagatcgcc
cgccaccttcccccctctctctacgtcctcctggtacaggccagcgcttacggacaggcc
tgcgataagagcctgagtgtgtccatcagtggagatgtggacgaggccaaagctctgtct
aaacctccagaggactcccaggatgatgattctggtgactctgatgcagaggaggagcag
gagaagacgaagaggaggcgacctactacaggtggtcagctggatgataagagacgtgag
atgctgaagagacaccctctctctctttgcctggacctcaaatgcaaagacggcagtgtg
ctgcatctgttcaactactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccaccgccacagacctcactggagccatcagcgcaggggagctgttaaattctgacacg
cttctcaactgcctgtatgctaatgaccagggccgcgagacacccaaccccgctaaccgt
taccagtttgataaagtggggattagttcgtttggagactacgtggcagagttgggtcat
ccctacctgtgggtgcagagtctaggaggactgcagttcccaagtgatgccccagagggt
ttgcgtgcaggcagttctcttagtgccagtcacatggagagcaccatgaagctgctgaga
ggacgagtccagtcccgcctggccctgcacaaacagttctcctcactagagcacagtata
gttccagtgtccacggagtgccagcacctgttccctgctaaggttctctcccgcctggct
cgctggacaaccatgtcacatcaggagtacacaaatctgtcgttcacgcagcacgtgtca
gatgcaggtctggctcgggaaacggacctgttcttcatggctgtggtggagagaggaaca
gctcgtcttcaggctgcagtggtgttgaacccccgttatccagaagtctctcctctgttt
gctctttcactcagctggaagggcgaatgcagtggacgtacagatgacaaccttagagcc
atggaaagtgaggtgaatgtgtttaagtcagagctccaggggccccgcccaggacaccag
ctgctgaccaatcaggtggctcgtctctgtgtctgtctggacgtatacctggagaccgac
ggacaagatgacagcgtggagggaccgcgggagtttctcagagagaagatgtgtctacgc
accgtaaggggtccgaaccgtctgaagccgttcaagtacaaccatccccagggcttcttc
agtcaccgctga
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