KEGG   Oncorhynchus gorbuscha (pink salmon): 124034388
Entry
124034388         CDS       T07892                                 
Name
(RefSeq) splicing factor 3A subunit 1-like isoform X1
  KO
K12825  splicing factor 3A subunit 1
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124034388
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ogo03041]
    124034388
Spliceosome [BR:ogo03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    124034388
 Complex B
    124034388
 Complex C
   U2 SnRNP specific factors
    124034388
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin Rad60-SLD Ubiquitin_2
Other DBs
NCBI-GeneID: 124034388
NCBI-ProteinID: XP_046203474
LinkDB
Position
LG04:60455980..60465670
AA seq 826 aa
MMCPSPEPDQKTASSAPFTATLVWFTGWDPIHCPGWWAKHRIRFGKVVFLVVMMADESTE
ETPATKPIVGIIYPPPEVRNIVDKTASFVARNGPEFEARIRQNEINNPKFNFLNPNDPYH
AYYRHKVNEFKEGKGQEPSAAVPKVMQQQALQNSQQLPQKVQAQVIHETVVPKEPPPEFE
FIADPPSISAFDLDVVKLTAQFVARNGRQFLTQLMQKEQRNYQFDFLRPQHSLFNYFTKL
VEQYTKILIPPKGLLIKLKRESENPREVLDQVRYRVEWAKFQERERKKEEEEREKERVSY
AQIDWHDFVVVETVDFQPNEQGHFPPPTTPEELGARILTQERYDKFGESEEVEMEVESED
EEDDEREDRDDGRPTQPDQDTQLQDMDEGSDDEEDGKAPLPPDNPMPPPLPPTPDQVIIR
KDYDPKASKPQPPAKTLDEYLISPITGERIQASKMQEHMRIGLLDPRWLEQRDRGIRERQ
IEDEVYAPGMDIESSLKQLAERRTDIFGVEETAIGKKIGEEEIQKPEEKVTWDGHSGSMA
RTQQAAQANITLQEQIEAIHKAKGLVQEDESKEKIGPSKPELYHHHHQSPLISSAPLLPK
PSPPMNTMARAPPSMLPPVRTTLLSAVPVIPRPPMAPVQMRLAPGQVLTPMPPMMHAPRI
NVVPMPQPPHMMAPRPPPMVVPTSFVPAPPVPQPPRPDPQPPSHPPPRHDDEPVTKKMKT
EDNLIPEEDFLRIYKGSVSVKVQVPNMQDKTEWKLSGQALNFTVPLTDQVSVIKVKIHEA
TGMPAGKQKLQYEGIFIKDSNSLAYYNMNNGSVIHLALKERGGRKK
NT seq 2481 nt   +upstreamnt  +downstreamnt
atgatgtgcccgtctccggagcctgaccagaagaccgcttcgtctgccccttttacggcg
acattggtttggttcactggctgggatccgatccattgtcctgggtggtgggcaaaacac
aggatccgcttcgggaaagtcgtattcctggtcgtaatgatggcagatgagtcaacagag
gaaaccccagcaacgaaacccatagttgggatcatctatccacctcctgaggtccgaaac
atcgtcgacaagactgccagttttgtagccaggaatggaccagagttcgaggcaaggatc
cgtcagaatgagatcaacaacccaaagttcaacttcctgaaccccaacgacccataccat
gcttactaccgccacaaagtcaatgaattcaaggagggcaagggccaggagccgtctgcg
gccgtaccaaaggtcatgcagcagcaggccctgcagaactcacagcagcttcctcaaaag
gtgcaggcccaggtgattcatgagacagtggtgccaaaggagcctccacctgagtttgag
ttcattgctgaccctccttcaatctcggcattcgacctggatgttgtcaagctgaccgcc
cagtttgttgctcgcaacgggcgccagttcctcacacagctcatgcagaaagaacagcga
aactaccagtttgacttcctgcgacctcaacacagcctcttcaactacttcaccaagctg
gtggagcagtacactaagattctgatccctcccaagggacttctgataaagctgaaaaga
gagtctgagaaccccagggaggtgctggaccaggtgaggtaccgtgttgaatgggcgaag
ttccaggagcgtgaaaggaagaaggaggaggaggagcgggagaaagaacgtgtgtcctac
gcccaaattgactggcatgactttgtagtggtggagaccgtggactttcagcctaatgaa
caaggccacttccccccaccaacaacacccgaggagctgggagctcgcatcctgacccag
gagcgttatgacaagtttggagagagtgaggaggtggagatggaggttgaaagtgaggat
gaggaggacgatgagcgggaggaccgggatgatgggcgtcccacacagcctgatcaggac
acacagctgcaagacatggatgagggttctgatgacgaggaagatggcaaggcaccattg
cccccagacaaccccatgccacccccactgccccctactccagaccaggtcattatccgc
aaggactatgaccccaaagcctccaagccacagcctccagccaagactctggatgagtac
ctcatctctcccatcacgggtgagaggatccaagccagtaagatgcaggagcacatgcgc
attgggctactggatccccgctggctggagcagagggaccggggcatcagagagaggcaa
atcgaggacgaggtttacgcccctggcatggacattgagagcagcctgaaacagttggct
gagaggcgtactgatatctttggcgtggaggagacagccatcggaaagaagattggagaa
gaggagatccagaagcctgaggagaaggtgacctgggatgggcactctggcagcatggcg
cgtactcagcaagcagcacaggccaacatcaccctacaggagcaaattgaggccattcac
aaggccaagggactggtgcaggaggatgaaagcaaagagaagattggaccgagcaagcct
gagctttaccaccatcatcatcaatcacccctcatctcctctgccccccttctgcccaaa
cccagccctccaatgaacacgatggctcgggcccctccttccatgctgccccctgtacgc
accactctcctgtcagctgtgcctgtgattccacggccccccatggcccctgtgcagatg
cgcctggccccagggcaggttctaacacccatgcctcccatgatgcatgctccccgcatc
aacgtggtacccatgccccaaccacctcacatgatggcccccagaccaccccccatggtg
gtaccaacttcatttgtccctgcccctcctgtcccgcagcccccccgccctgaccctcag
ccaccttcccacccacccccacgccatgatgatgagcctgtcaccaagaagatgaagaca
gaggacaaccttataccagaggaggatttcctccgcatatacaagggttcagtgtcggtc
aaagtacaagttcccaacatgcaggacaagacggaatggaagctaagtggacaagcgctc
aacttcactgtcccactcacagatcaggtatctgttattaaagtcaaaatccatgaagcc
actggcatgccagctggaaaacaaaagctacagtatgagggaattttcatcaaagattcc
aactcgctggcctactacaacatgaacaacggttcagtcatacacctggcactgaaggag
agaggtgggagaaagaagtga

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