Oncorhynchus gorbuscha (pink salmon): 124034632
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Entry
124034632 CDS
T07892
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
124034632
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124034632
Membrane trafficking [BR:
ogo04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
124034632
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
124034632
RAVE complex
124034632
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR5
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_IFT140_1st
WDR55
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
EIF3I
WD40_Gbeta
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_VPS8
Beta-prop_DCAF12
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
124034632
NCBI-ProteinID:
XP_046204015
LinkDB
All DBs
Position
LG04:complement(74009966..74062660)
Genome browser
AA seq
3024 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSINNQPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDSSLQGGQVAASYGSIVCVFEPVQLLNQKDRTSAELSYQWQKSGQFVLQSTVRNLAW
DPTGTRLLTGSASLQLWSNISDGFDEAGEQTDMTIGDPQCPWRCIWHCKTASPIQLMKFS
PDGEFFATAGQDDCLVKVWYGTSKWQSGVTKLFTPPEHNAQGELDFSFVYLAHPRTVTGF
SWRKTSKYMPRGSVCNVLLTCCKDSVCRLWAETLLPSDSLLSGHTLSHVNNNGQSSDSLK
SSSSKKTPSRIKTQDRNSLELNLQESWRAPLRGVAQPSLTGRLPTQQNSHHNHKTNSVPH
ANSLCHFHIAASINPATDIPLLPSITSLCGGDDEEPGGPFTVHWLNNKELLLTLAMEVFL
QQLRGSVEQNHSENSQEELDYEEVEEASRRAAEGGPDVASTQLPAAAVEHQVEVLLEDWN
RGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLSRSVV
MYACNKNVDLAIQHGRQRPAGLPHSSSVLIPYGQSKATSNSSSLRLSIFTPNVLMISTHS
DGSLNQWAVSFAEESAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHHNALRTP
DVDSVPAPSTTLSQPFGGGPSRVSLGAVSQDPNAIYSELILWRVDPVGPLSFSGGVSELA
RINSLHSSAFSNVAWLPTLIPSNCLGVYCNSPSACFVASDGHSLRLYQAVIEAKKLLSEL
SNPDISKYVGKVFNIISQQSTAKPGCIIELDAITDFQGKETQLLHVFEEDLILGSERREA
TQEAPPIETASSQPGFSARFFLVVVEFTQTGRSFLHMWHLQLAAGQITMDETGAPPEKEN
MTSSPMNSSFSFETFSSPSAQKNKPCTSNLQSASRLTLATHRLYSQELALPDGVEVISVT
PSAGHLSASSLQPAGGAPYLLATSCSDGKVRFWRCRVAAVEPDTKELTYTWEEWPLLVEE
GLGNSSAVTVSGRPVTVSCCHTSRIAVAYRHNPSPHLSPNHLSPNPQQGVREPLVHVGLF
QCESTGGSHWVLEQTLVLDASTPTGNNNMESGVKDLNVENNNLDIYLPNDDCLGTSGKSL
VHLDWVSREDGSHILTVGIGSKLYMYGLLSGKPPELGLSEGPREQSSSRLVLLRSVDLVS
SVEGSLPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPALAKSTASNTTTTDMGSVSSLLA
AMKQSHEEGLNPVPPKKSLTRSMTSLAQKLSGKRTVYDLPAEMEDYGLFEAAHHLFPTLP
QYHPVQLLELMDLGKVRRAKAILSHLVKCIAGEIVALKDNGTNQDKRLRSRTISAGGSTS
RDPKLFSKGESSDYTEIDSIPPLPLYALLAADEDCSPKPKDKVASLSGDSGHGSSQTDAY
DELFQSSGVGVDDLEHMDSDQEDGCAKVIDLSQYSPTFFGPEHAQVLSSHLLHSSLPGLT
RMEQMSLMALADTIATTSTDIRESQSRGKGGETLDECGLKFLLAVRLHTFLLTTLPPAHR
AQLLRQGLSTCHYAWAFHSEAEDELLHMLPALQKGDPTWPELRAMGLGWWLRSTNKLRRC
IEKVAKASFQRQNDPLDAAIFYLAMKKKAVVWGLYRSQKNAKMTTFFSNNFSEERWRRAA
LKNAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLYESEFETSSTY
KRILQRHVLGQDRQLPAHQDPFLRSTAYWVLEDYSRALDTLLEQPAAPNLASSTQAGHTT
QPGSTSSTSLCSPEVFNFYTYLRTHPLLLRRHFGSSEKTRVGLTAEGRMANSISLVERRL
FFTAAYAHLQAGCPMLALEVLSKMPKVVKRSKLPQDDTTNPDLSETKKEQASDLDWSQPA
LNGFESVSDSLSNSQSDSVLSFDWGQPSVSVQDEALELKWDSDKEEEEEDDELQGLAMKS
ADNTSSVFQDAISPLTETLLDEGDFLMPSEDILAAQLKFSACLKILTTELRTLSTGYELD
GGKLRYQLCQWLEREVVALQRCCSYKPCLPELALGMAGPGGEEAAQAHPGEAQRTRRHWL
QSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESQQDDGVQSAVAPYLHHASIPLL
LACTASAKTVVANPIVHLTNLTHDILHTINALDSPPHPDVVNNEIYVMHTLAASLSACIY
QCLCDGHNHSHVNQFTGIVYQSILSFQHHSVRTVSMEETVLPNTHPAQWPGISTLIRLLN
SAGEESQPGLAVLLCEILTAVFLSLFVHGLATHSSNELFRIVAHPLNSKLWVAVFGGGAR
TPITEKPSKDKSPPAANEEFDRKPRRFKLLSSSPRSASREGPETSSPTSPVVEQETSIFK
EHFVPPELSIWDYFIAKPFLPPSESRVEYDSEESQGSQDEDDDDDEDEFGDFDPNSPSRE
HSNPNSYSWCLMRLAMVQLVLGNLKSFYPMAGHDLLDLPVGSPLCHAVLKTLQRWEQVLL
KRLEIFGGPPSKYISTHPLDETAASGPAILRHKALFEPSNTPFRSSHHSALPVKRLWQYL
VKQEEVQETFIRNIFTKKRNQNESVEDLNENDKCSGMEEPSCNQSEADLGYPGGKARIIH
KDSDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDTEAEAKSDDFLVI
QARDDFNTLHGTTPYTHSSLGTPINMPWLGGLQTGRGAAVLIKRNINNVRRMTSHPTLPY
YLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGALRLWQTNT
TGNTPKPYLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVNPMNSLVHAFS
CHESGATVLSLAPRQQLLITGGRKGWISVLELPHRHQRQSFQAHDSPVKALAVDPTEGSF
ISGSAEGNIKVWSLSMQCLLHQFPNEHARQSLFRNLGTGVMQIEVGPANHIFSCGADGTM
KMRILPDRFSVNNGNLKNDVKFII
NT seq
9075 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttcaccaagtccttactggggccgtcaacccaggggacaattgtttttctgta
ggtagcataaacaaccaaccattcacggcatatgcctctggctgtgacgttgtgattttg
ggcagtgactttgaaaggctacagatcatcccaggagcgaagcatgggaacatccaggtg
ggctgtgtggacagctcactacagggaggccaggttgcagcttcctatggaagtattgtc
tgtgtctttgagccggttcagctcctgaaccagaaggacaggacatcagcagaactgagc
taccagtggcagaagagtggacagtttgttttgcagtccacagtgcgtaacctggcctgg
gaccccacaggcactcgtctcttaactgggtccgctagcctgcagctgtggtccaatatc
agcgatggttttgatgaggcaggggaacagacagacatgacaattggtgaccctcagtgt
ccctggaggtgtatctggcactgcaaaaccgcttccccaattcagctcatgaagttctct
ccagatggagaattctttgctactgccggacaggacgactgtctggtcaaagtgtggtac
ggcacgagcaaatggcagtcgggcgtgaccaagctgttcaccccaccggagcacaacgct
cagggcgagctcgacttctcttttgtctacctggcacacccacgtactgtaacaggcttc
tcctggaggaagaccagcaagtacatgccacggggttcagtgtgcaatgttctactgaca
tgctgtaaggacagcgtgtgtcgcctgtgggccgagaccctgcttcccagtgacagcttg
ctgtccggacacacgctcagtcacgttaataataacggacagagcagcgactcactgaag
tcgtcaagcagcaagaagactccctctcgtatcaaaacacaggacaggaattccctggag
ttgaatctgcaggagtcgtggagagcccccttgagaggtgtggcccagccctccctaacc
ggccgcctcccgacccagcagaacagtcaccacaaccacaagaccaacagcgtgccccat
gccaactctctctgccacttccacatcgctgccagcatcaaccctgccacagatatcccc
ctgctgccctctatcacgtctctgtgtgggggagatgacgaggagcctggcgggcccttc
accgtgcactggctcaacaacaaggagctgcttctcaccctggccatggaggtgttcctg
cagcagctcagaggcagtgtggagcagaaccactctgaaaactcccaggaggagcttgac
tatgaggaggtagaggaggcttctaggcgagcggcagagggaggacccgatgtggcgtcc
acccagctgcctgctgcagcggtggagcaccaggtagaggtgctactggaggactggaac
agaggggcagacatgctgttcagtatccaccccatggatggctctctgctggtgtggcat
gtggactggctggatgaataccagcccggcatgttccggcaggtccaggtgtcctttgtg
tcccggattcctgtggccttccccacgggcgacgccaactccctgagccgcagcgtggtc
atgtacgcctgtaacaagaacgtggacctagccatccaacatggccgccagcggcctgcc
ggcctgccacattcctcgtcggtgctgattccctacggccagagcaaggcgacctccaac
tccagcagcctccgcctcagcatcttcacccccaacgtgctcatgatctccacacactcc
gatggctccctcaaccagtgggcggtcagcttcgcagaggagtcggccttctccactgtg
ctcagcgtgtcccacaagtcacgctactgcggccaccgcttccacctcaacgacctggcc
tgccactccctgctgcccctgttgctcaccacctcacaccacaatgctctgcgcaccccc
gacgtagacagtgtccccgccccctcgaccaccctttctcaaccctttgggggcgggccc
agccgggtgtccctgggcgctgtgtcgcaggaccccaatgccatctacagcgagctcatt
ctgtggagggtggatccagtgggacctctgtccttttctggaggggtgtctgagctggcc
aggatcaactctctccactcctccgccttctccaatgtagcctggctgcccacacttatc
cccagcaactgccttggtgtctactgcaactctcccagtgcctgcttcgtggccagtgac
ggtcactcgctgaggctttatcaggctgttattgaagccaagaaactactcagtgagctc
tccaacccagatatttcaaaatatgtcgggaaagtttttaacatcatcagccagcaatcg
actgctaaaccaggttgtatcatcgagctagatgccattactgacttccaggggaaggag
actcagctgctgcatgtgtttgaagaggatctgattctgggcagtgagcggagagaagcc
actcaggaagctccccctatagagactgcctccagccagccaggcttctccgcccgcttc
ttcctggtggtggtagagtttacccagactggcaggtctttcctgcatatgtggcacctg
caactggcagctggccaaatcactatggacgagaccggcgctccgcctgaaaaggagaat
atgacctcgtcaccaatgaacagctcctttagctttgagacgttcagctccccctcggcc
cagaagaacaagccttgcacgtccaacctgcagagtgccagtcgcctcaccctggccact
cacaggttgtacagccaggagctagcacttccagatggtgttgaggtgatcagtgtcacg
ccctcagcaggtcatctgagcgcgtcctccctgcagccggcaggtggcgctccctatctc
ctggccacttcctgttcagacgggaaggtgaggttctggaggtgcagggtggctgcagtg
gagccagacaccaaggagctgacgtacacctgggaggaatggcctctattggtggaggag
gggctgggcaacagcagtgccgtgaccgtgtcaggcagaccagtcacggtcagctgttgc
cacaccagccgcattgcagtggcctaccgacacaaccctagccctcacctgagcccaaac
cacctgagccctaaccctcagcagggtgtcagggaaccactggtccatgtagggttattc
cagtgtgagtccacaggtggctcccactgggtgctagagcagaccctcgtcctggatgcc
tccactcccactggtaacaataacatggagagtggcgtcaaggacctgaatgtggagaat
aataacctggacatctatctgcccaatgacgactgcctggggacctctggtaagagtctg
gtccacctggactgggtctccagggaggacggctcccacattcttactgtggggattggt
tccaaactctacatgtatggcctgctctctggcaaacctcctgaactgggcctgtctgag
ggccccagggagcagagctcttcccgcctggtcctcctgcgctccgtggacctggtctcc
tctgtggaaggctccctgcccatccccgtctccctgtcctgggtgagagacggcatcctg
gtggtgggcatggactgtgagatgcacgtgtactcccagtggcagcccccggccctggcc
aagtccacggcctcgaacaccaccaccacagacatgggcagcgtgtcatctctcctggct
gcaatgaaacagagccatgaggagggcctgaaccccgttcctcccaagaagagcttgacc
aggtccatgaccagcctggcccagaagctgagtgggaagaggacagtgtacgacctgcct
gcggagatggaggactacgggctgtttgaggcggcacaccacctgtttcccaccctgccc
cagtaccacccggtacagctgctggagctcatggacctggggaaggtccggcgggctaag
gccatcctctcccacctcgtcaaatgcattgccggggagattgtggccctcaaagacaac
ggcaccaaccaagacaagcgtctccgctcgcgcaccatcagcgccggcggcagcacctcc
agagaccccaagctcttcagcaagggcgagagctcggactacacagagatagactccatc
cctcccctgcccctgtatgcgctgctggcggccgacgaggactgctcccccaagcccaag
gataaggtggccagcttgagtggagacagtggccacgggtccagtcagacggacgcctac
gatgagctcttccagagcagcggggtgggtgtggacgacctggagcatatggacagcgac
caggaggacggctgtgctaaggtcatagacctgtctcaatatagccccaccttctttggg
ccagagcacgcccaggttctgtccagccacctgctccactccagcctgccgggcctgacc
cgcatggagcagatgtccctcatggccctggctgacaccatcgccaccacaagcactgac
atccgggagagtcagagcaggggtaaaggtggagagactttggatgagtgcggtctgaag
ttcctgttggctgtgaggctccatacgttcctgctgaccaccctgcctcctgcccatcgc
gctcagctgcttcgccaaggtctgtccacctgtcactacgcctgggccttccactccgag
gctgaggacgagctgctccacatgttacctgccttgcagaaaggagaccccacctggccc
gagctccgtgccatgggcttgggctggtggctcaggagcaccaataaactccggaggtgt
atagaaaaagtcgcaaaagcgtcttttcaaaggcagaacgatcctctggacgccgccatc
ttctatctcgctatgaaaaagaaagcggtggtctggggactgtacaggtctcagaagaat
gctaaaatgactacgttcttcagcaacaacttcagtgaggaaaggtggaggagggctgcc
ttgaagaacgccttctctctgctggggaagcagcgcttccagcactctgcagccttcttt
cttttggcaggctccctcaaggacgctgtggaggtttgcctggagaagatgcaggacctg
cagttggccctggtgatctcccggctctatgagtccgagtttgagacgtcctccacctac
aaacgcatcctgcagagacacgtgctgggccaagaccgccagctccccgcccaccaggac
cccttcctgcgtagcacggcttactgggtgctggaggactacagccgggccctggatact
ctgttggagcagcctgctgccccaaacctagcgtcctctactcaggctggccacacaact
caaccaggtagtacctcgtccacgtccctctgtagcccggaggtcttcaacttctacacc
tacctccgcacacatcccttactgctgcgccgccattttggctcgtctgagaagaccagg
gtgggtctgacagcggagggtcgcatggcaaactcaatcagcctggtggagaggaggctg
ttcttcaccgcagcctacgctcacctgcaggccggctgccccatgctggccctggaggtc
ctctccaaaatgcctaaagtcgtcaaaagatccaagctcccccaggacgataccaccaac
cccgacctgagtgagacgaaaaaggaacaggcgtcagatttggactggtctcagcccgcg
ttgaacggcttcgagtctgtgtcagacagcttgtccaatagccaatcggactctgtgctg
agttttgactggggccagccgtctgtgtcggttcaggatgaagccctggagttgaaatgg
gacagcgacaaggaggaggaagaggaggacgacgaactacagggcttggccatgaagagt
gccgacaacaccagtagcgtctttcaagatgccatctctccattgacggagacgctgctg
gacgagggtgacttcctcatgccctctgaggacatcctggccgctcaactcaaattcagc
gcctgcctaaagatcctgaccacggagctgcggactctgtccacgggttacgagctggac
ggggggaagctccgctaccagctgtgccagtggctggagagggaggtggtggccctgcag
aggtgctgcagctacaagccctgcctgccagagctggccctgggaatggcagggccgggt
ggagaggaggcggcccaggcccaccctggtgaggctcagcgcacccgcagacactggctc
cagagcaaccagcctctcctgcgcatgttcctcagctactgcagcttgcacggctcccac
ggaggaggcctggcctcggtgcgcatggaactcatcctgctgcttcaggagtcccaacag
gatgacggtgtccagtcagccgtcgccccctacctgcaccacgcctccattcctctcctg
ctggcctgcactgccagtgccaagacagttgtggccaaccccattgtccatctgaccaac
ctcacccacgacatcctgcacaccatcaacgcactggactccccgccacacccagacgtc
gtcaacaacgagatctatgtgatgcacacactggcagcctcgctgtccgcctgcatatac
cagtgtctctgcgatggccacaaccacagccatgtgaaccagttcactgggatagtgtac
cagagtatcctctccttccagcaccactctgtacgcactgtgagcatggaggagactgta
ctgcccaacacccacccagcacagtggccaggtatcagtaccctgatccgcctgttgaac
tctgctggtgaggagagccagccaggcctggccgtgttactgtgtgagatcctgacggcc
gtcttcctcagcctgtttgtgcacggcctggccactcactccagcaacgagctgttccgc
atcgtggcccacccgctcaacagcaagctgtgggtggctgtgttcggagggggggcgcgt
acccccatcacagagaagcccagtaaggacaagtcacctccagcagccaatgaggagttc
gataggaagcctaggcgcttcaagctgctgtcgtcgtcgccacgcagtgcctccagagag
gggccagagacctccagcccaaccagccctgtggtggagcaagagacctccatcttcaaa
gagcactttgtccccccggagctcagcatctgggactactttatcgcaaagcctttcctc
cctccgtcagagagcagggtggagtacgactcggaggagagccagggcagtcaggacgag
gatgatgatgatgatgaagacgagtttggagactttgaccccaactctcctagccgagaa
cattccaatcccaactcctacagttggtgtctgatgcgtctggccatggtccagctggtc
ctaggcaacctgaagtcattctaccccatggcaggacacgacctactagatctacctgtg
ggctctcctctgtgtcacgcggtgctgaagaccctccagcgttgggagcaggtgttgctg
aagaggctggagatcttcggggggccgccctccaagtacatctccacacaccctctggac
gagacggctgcctcgggccccgccatcctcagacacaaagccctgtttgagccctccaac
acacccttcaggtccagtcaccactctgccctgcctgtgaagaggctgtggcagtacctg
gtcaaacaggaagaggtgcaggaaacgttcatccgcaatattttcaccaagaaacgaaac
caaaacgagtcggttgaggacctcaatgaaaatgacaaatgttcagggatggaggagcct
agctgtaaccagagcgaggcagatctgggctaccccggaggcaaggcccggatcatccac
aaggactcggacatcattacagccttcgccatcaacaaggctaatcggaactgcttagtc
atggcctccactcatgacatccaggagctggacgtgtcctccatcttggccactcagatt
ctgacgtggatcgatgacgatacggaggccgaggccaaaagtgatgacttcctggtgatc
caggcccgggatgacttcaacaccctccacggcaccaccccctatacccacagcagccta
gggacgcccatcaacatgccctggctcgggggcctgcagacggggagaggcgctgccgtg
ctcatcaaaaggaacatcaacaacgtgagaaggatgacctcccacccaaccttgccttac
tacttaacaggagcgcaggacggaagtgtccggatgtttgagtggggccactctcagcag
attatctgcttccgaagtccaggcaattccagagtcacacgaatacgattcaaccaccaa
ggaaacaagtttggtatcgttgacgctgacggagccctacgtctatggcagaccaatacg
actgggaacacccctaaaccctacctgacattgcagtgccataataagacggctcacgac
tttgtgttcgtgggctcatcctccctcatagccacagcagggctgtcaacagacaacagg
aatgtgtgtctttgggatacattggtgaatccaatgaacagtctagtgcacgcctttagt
tgtcatgagtcgggggccacggtgctgtcgctggcccccaggcagcagcttctgatcaca
ggtggcaggaagggctggatcagcgtgttggagctcccccacaggcaccagcgccagagc
ttccaggcccacgactcccctgtcaaggccctggctgtggaccccaccgagggcagcttc
atcagcggctctgccgagggcaacatcaaggtgtggagcctgtccatgcagtgcttactg
catcagttccccaacgagcacgctcgccagtccctgttccggaatctgggcacgggcgtg
atgcagatcgaggtgggcccggccaaccacatcttttcgtgtggcgccgacggtaccatg
aagatgaggattctccctgaccgcttcagcgtcaacaatggcaacctgaagaacgacgtc
aagttcatcatttag
DBGET
integrated database retrieval system
