Oncorhynchus gorbuscha (pink salmon): 124035580
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Entry
124035580 CDS
T07892
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124035580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124035580
03036 Chromosome and associated proteins [BR:
ogo03036
]
124035580
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124035580
Coactivators
SAGA/TFTC/STAGA complex
124035580
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
124035580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
TAF
Motif
Other DBs
NCBI-GeneID:
124035580
NCBI-ProteinID:
XP_046205031
LinkDB
All DBs
Position
LG05:16830287..16951549
Genome browser
AA seq
708 aa
AA seq
DB search
MSSPLGAVNSVINSVSSPSAVFNLAATSTASLVMAKPAVNVVGQTTTVGVVRSPSVATAT
QPLLQPGVQAAQRIVAPQLIVRPPQQPQTTIQLPPGFTIPPGMVLVRTEMGQLVMVPQQA
LAQAQAQAQTQAQNNISPRTATTTAGATFRATTLQSVTSQAIRPCPPPVQAKMVLSPTPS
PVLQISSSPAPPSKGPMAPVVAVTAPQQAPVVMAPQAQVQAGAQAPSQPALPQQTSAPVA
PGASVISQEMQENVKKCKNFLATLIKLASHNSPSPETSKNVKSLVQDLLDAKIEPEEFTN
RLQSELKSSPQPYLVPFLKKSLPALRLSLLNIQHSLIQPLPQAKATPTPTTGTSSAIMAV
PAVRGRLPNSGSTTGASVGAQGHTAALGIKQAGTSGCQVRMPMLITPLRTQGTVSKGATL
QAGKSPVGFAVKGSGNQKNKLNDPGGGSFRDDDDINDVASMAGVNLNEESARILATNSEL
VGTHIRSCKDEAFLHPGLLHRRILETAKKFGVSEVPMEAVNFISHATQSRLRTVLEKVSS
IAQHRMDGGKDEEWFEQSADVRSQLKFFEQLERIEKQRKDEQEREILLKAAKSRSRQEDP
EQARLKQKAKEMQQQEMALVRQRDANLTALAAIGPRKKRKMDSPGATPSGTEVSGSSVGS
PGAASSPSTSSQRQRQRITRVNLRDFIFYMEQERETAHSLLLYRALLK
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtccagtccgttaggtgctgtcaattccgtaataaactctgtttcctctccctctgct
gttttcaacctagcagcgacttctactgcaagtcttgtcatggcaaagcctgctgtcaat
gttgttggacaaacaacaacggttggagtggtaaggtctccgtctgtggccacagctaca
cagcccctgcttcaaccaggagtccaagcagctcaaagaattgttgccccccagctgatt
gtcagacccccccaacaaccacagacgaccattcaactgccacctgggtttaccatccca
ccgggaatggtgttggtgcgcactgagatgggtcagctggtgatggtcccacagcaggcc
cttgcccaggcacaggcccaagctcagacccaggcccagaacaacatctccccccgtact
gctacaaccactgcaggggccaccttcagagcaactaccctacagtctgtgacctctcag
gctattcggccatgtcctcctcctgtccaggccaagatggtgctgtctcccactcctagc
cctgtcctccagatctcctcctcccctgcgccaccttctaagggccccatggcgccggtc
gtggcagtgacggctccccaacaggcccccgtggtgatggccccccaggcccaggtccag
gctggggcccaggccccctcccagccagccctgccccagcagaccagcgcccctgtagcc
ccaggagcctctgtcatctcccaggagatgcaggagaatgtgaagaagtgtaagaacttc
ttggccaccctgataaagctggcttcccacaactctccgtcacctgagacctccaaaaat
gtcaagtcactggtccaggatctactggatgctaagattgagcctgaggagttcaccaac
agactgcagtcagagctcaagtcgtctcctcagccctacctggtccccttcctcaagaaa
agcctcccggccctgcggctgtctctgctcaacattcagcattccctgatccagcctctg
ccgcaggccaaagccacccccacccccaccacaggcaccagctctgccatcatggccgtc
ccagctgtccgcggccgcctccccaacagcggcagcaccacgggggcaagtgtcggggcc
cagggacacacagctgccctgggtatcaagcaagcaggaacctctggttgccaggtcagg
atgcccatgttgatcacaccattaagaacacaaggcactgtcagcaagggagccacactc
caagcaggcaaaagtcctgtgggttttgctgttaagggctctggaaatcagaaaaacaag
ctgaacgatcccggaggcggttctttcagggatgatgatgacattaacgatgtggcgtcc
atggcgggggtgaacctgaatgaagagagcgctcgtatcctggcaaccaactctgagctg
gtggggacacacatccgctcctgtaaagatgaggccttccttcacccgggcctgttacac
agacgcatcctggagacagctaagaagtttggcgtgtcagaggttcctatggaggctgtg
aacttcatctcccacgctacccagtcccgactccgcactgtgctggagaaggtctcctcc
atcgcacagcacaggatggacggtggtaaagatgaggagtggtttgagcagtcggcagac
gtgcggtcgcagctaaagttctttgagcaattggagaggatagagaagcagaggaaggat
gaacaggagagagagatcctactcaaagcagctaaaagtcgctccaggcaagaggaccca
gagcaggctcggctgaaacaaaaagctaaggagatgcagcaacaggaaatggccctggtg
aggcaacgagacgcgaacctgactgcgctagctgccatcggacctcggaagaaacgcaag
atggactcgccaggggccacgccgtcagggaccgaggtatcaggcagctcagtggggtcg
ccgggtgccgcctcctccccctccacgtcgtcacagcggcaacgtcaacgcatcacccgc
gtcaacctcagggacttcatcttctacatggagcaggagagagagacagcccactcactt
ctgctctaccgggctctgctcaagtag
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