Oncorhynchus gorbuscha (pink salmon): 124035745
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Entry
124035745 CDS
T07892
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16-like isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124035745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124035745
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124035745
Spliceosome [BR:
ogo03041
]
Complex C
Other components
Step II factors
124035745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_30
AAA_16
Flavi_DEAD
PhoH
AAA_7
Motif
Other DBs
NCBI-GeneID:
124035745
NCBI-ProteinID:
XP_046205337
LinkDB
All DBs
Position
LG05:complement(26035355..26053095)
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AA seq
1261 aa
AA seq
DB search
MEDDASLHRLEGSDPTAQVCGLIVKKSAAVEPHVFRAPTPRTSLLGLDLLAAQKRKEREG
KEQAEADSDDRNNKKSKVSSYKDWEEGKSDSGSDEEDKDEEDQGGRKESSRKYRVTGSET
PSNPGGVSEEFRRKHQQREKDRREHGMYASSKEDKNREREKDRERIRDTDRDRRGERDER
ERSNSRGSGRSERGDRSERSERSQREGWSSERISRGSKREEPPTPQTRPKDGTPSRTSWD
EDDSGYASSRRSHWESPSPAPSHKDSDKSERSERSPRSGRESERKDKSVRGRYPDDTPLP
TPSYKYNEWANDRKHLGSTPRLSRGKGKNEGEDGIAFDNDDEKQQWEEDQKQADRDWYMM
DEGYDEFHNPLTSTSEDYVKKREQILQKQTQKRISAQRRQINEDNERWETNRMLTSGVVQ
RLEVDDDFEEDNAAKVHLLVHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIISRKGSQ
LVRKHREQKERKKAQQKHWELAGTKLGDIMGIKKTEDGDSSGGKPVGEDGKVDYRTDQKF
ADHMKDKSEASSEFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQL
TQYLHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEELGSNLGEEVGYAIRFEDCTSEKTVI
KYMTDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVSRRSDLKLIVTSA
TMDSDKFAAFFGNVPIFHIPGRTFPVDILFSKTPQEDYVEAAVKQALQIHLSGMGGDILI
FMPGQEDIEVTSDQIVERLEDLESAPPLTVLPIYSQLPSDLQAKIFQKAPDGVRKCIVAT
NIAETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRAGRAGRTGPGQC
YRLYTQSAFKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMY
QLWILGALDNTGSLTPTGRLMVEFPLDPALSKMLIVSCDMGCSADILIIVSMLSVPAIFY
RPKGREEESDQVREKFSVPESDHLTYLNVYLQWKNNNYSSIWCNEHFIHTKAMRKVREVR
SQLKDIMVQQRMNLVSCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTS
SLFGMGYTPDYITYHELVMTTKEYMQCVTAVDGEWLAELGPMFYSVKQAGKSRMENRRRA
KEEITNMEEEMSLAEQQLRSRREDQDRKSNVGSVRAVKICTPGRKEEAPMTPKRTPARFG
L
NT seq
3786 nt
NT seq
+upstream
nt +downstream
nt
atggaggatgatgcgtcgctgcaccgactggagggcagtgaccccactgcgcaggtctgc
gggttgatcgtgaagaagagtgcagcagtagagcctcatgtctttcgtgcacccactcca
cgcacctctctcctgggcctggatctgctggcagctcaaaagagaaaggagcgagagggc
aaggagcaggctgaggctgatagcgatgacaggaataacaagaaatccaaggtttcctcc
tacaaggactgggaggaagggaaaagtgattctgggtctgatgaagaagacaaagatgag
gaggaccaaggtggtagaaaagagagcagcaggaaataccgtgtgactggctcagagaca
ccctctaaccctggaggggtcagcgaagagttccgtcgcaaacaccagcagagggagaaa
gaccgtcgtgagcatggaatgtacgcctcctccaaagaggacaagaacagagagagggag
aaggacagagagaggatcagagatacggacagagatcgaaggggtgaaagagatgagcgg
gagcgcagtaacagccgcggtagcggccggtcggagcgtggagaccgcagtgagaggagt
gagcgctcacagagagaaggctggtcctccgaacgcatcagccggggtagcaagagagag
gagcctccaacgccccagacacgccccaaagatggcactccctcgcgcaccagctgggat
gaggatgacagcggctatgccagctcacgccgttcccactgggaatctccctctcctgcc
ccttcacacaaggattctgacaagtctgaacggtcggagcgcagcccccgctctggacgg
gagagcgagaggaaggacaagtcagtcagaggccggtatcctgatgacacgccccttccc
accccatcatacaagtacaacgaatgggccaatgacaggaagcacttgggctccactcct
cgtttgtcccgtgggaaaggtaagaatgaaggagaggatggcatcgcctttgataatgat
gatgagaagcagcagtgggaagaggaccagaagcaagcggatagagactggtacatgatg
gacgaaggctatgatgagttccacaacccactgacctctacctctgaggattatgtgaag
aagagagagcagatcctgcagaagcagacacagaaacgcatctctgcccagagacgacag
atcaatgaggataatgagcgctgggagactaaccgtatgctgaccagtggagtggtccag
aggctggaggtggatgatgactttgaggaggacaatgctgccaaggtccacctgctggtt
cacaacctggtccctcccttcctggatgggaggatagtcttcaccaagcagccggagcct
gtcatccctgtgaaagacgccacctctgacatggccatcatctcccgcaagggcagccag
ctggtccgcaagcaccgcgagcagaaagaacgcaagaaggctcaacagaaacactgggag
ctggcaggcaccaagctgggtgacattatgggcatcaagaagaccgaggacggggatagc
tctgggggcaagccagtgggcgaggatggcaaggtggactacagaacggatcagaagttt
gcagaccacatgaaagataagagtgaggccagcagtgagtttgctaagaagaagaccctg
ctggagcagaggcagtatctgcccatcttcgctgtgaggcagcagctgctcaacatcatc
agggacaacagcattgtgatcgtggtgggggagacgggcagtgggaagaccacccagctg
acccagtaccttcacgaggacggctacaccagttacggcatggtgggctgcacccagccc
cgcagagtggcagccatgagcgtggccaagagagtcagcgaggagctgggcagcaacctg
ggagaggaggtgggttatgcgatccgttttgaggactgtacgtcggagaagactgtgata
aagtacatgacagacggcatcctgctgagagagtctctcagggagtccgatctggaccac
tacagtgctgtcatcatggacgaggcccacgaacgctccctcaacacagacgtgctgttc
ggcctgctacgagaggttgtatcgaggcgttctgacctcaagctgatagtcacctcagcc
accatggactctgacaaatttgctgcatttttcggcaacgttcccatattccacattcca
ggaagaacattccctgtagacatcttattcagcaagactccccaggaagactatgtggag
gcagcagtgaagcaggccctacagatccaccttagtggtatggggggagacatcctcatc
ttcatgcctggccaggaggacatcgaggtgacgtcagaccagattgtggagcgtctggag
gatctggagagtgcccctcctctgactgtactgcccatctactcccagctgccctctgac
ctccaggccaagatcttccagaaggctcctgatggtgtgaggaagtgcatcgttgccacc
aacattgcagagacctccctgactgtggatggtatcatgtttgttgtggatgctggatac
tgcaaactcaaggtgttcaaccctcgcattggcatggatgccctgcaggtgtaccccatc
agccaggctaacgccaatcagcgtgcgggcagagcaggacgtacagggccgggccagtgt
tacaggctgtacacccagagcgccttcaagaatgagatgttgaccaccaccatcccagag
attcagcggaccaacctggccaacgtggtgctgctgctcaaatccctgggggtccaggac
ctgctgctcttccacttcatggaccccccgcctgaggacaacatgctgaactccatgtac
cagctgtggatcctgggggccctggacaacacaggttccctgacgcccactgggaggctg
atggtggagttccctctggacccggctctgtccaagatgctgatcgtatcatgtgacatg
ggctgcagtgctgacatcctcatcatcgtctctatgctgtctgtaccggccatcttctac
aggcctaagggtcgtgaggaggagagtgaccaggtgagggaaaagttctctgtcccagag
agtgaccacctgacctacctgaacgtctacctgcagtggaagaacaacaactactccagc
atctggtgcaacgaacacttcatccacaccaaggccatgcgaaaggtgcgtgaggtgcgc
tcccagctcaaagacatcatggtgcagcagaggatgaacctggtgtcctgtggctcagac
tgggacatcatcaggaagtgtatctgtgctgcctacttccaccaggcagccaagctgaaa
ggcataggggagtatgtgaatgtgaggacaggcatgccctgccacctccaccccaccagc
tctctgtttggcatgggctacaccccagactacatcacctaccacgagctggtcatgacc
accaaggagtacatgcagtgtgtgactgcggtggatggggagtggctggctgagctgggg
cccatgttctacagcgtcaaacaggcagggaagagcaggatggagaaccggcggcgggcc
aaggaggagatcactaacatggaggaggagatgtctctggcggagcagcaactgaggagc
aggagagaggatcaggacaggaagagtaacgtgggcagcgtcagggctgtgaaaatctgc
accccaggaaggaaggaggaagcacccatgaccccaaaacgcaccccagctcgttttggg
ctctag
DBGET
integrated database retrieval system
