Oncorhynchus gorbuscha (pink salmon): 124036039
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Entry
124036039 CDS
T07892
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03030
DNA replication
ogo03410
Base excision repair
ogo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124036039 (pole)
03410 Base excision repair
124036039 (pole)
03420 Nucleotide excision repair
124036039 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ogo03032
]
124036039 (pole)
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124036039 (pole)
Enzymes [BR:
ogo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
124036039 (pole)
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
124036039 (pole)
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
124036039 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
DNA_pol_B_exo1
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CpXC
Motif
Other DBs
NCBI-GeneID:
124036039
NCBI-ProteinID:
XP_046206084
LinkDB
All DBs
Position
LG05:complement(53108727..53147675)
Genome browser
AA seq
2290 aa
AA seq
DB search
MVLQNSGRYKSERGQGGDQDHQQDDRSSMSAAIRLERSQFTDEMDTRFGFERMKDPGEKT
GWLINMHPTEILDDDKRMVSAVDYYFIQEDGSRFKVPLPFKPYFYIATKKNCEREVISFL
SKKFQGKVAKLEMLPKEDLDLPNHLVGLKRIYIKLSFNTVDDLMKVKREISPAVRKNRER
EKSNDTYTSMLSSALAGGSVSAADEDGMSKKTSDQMDNIVDMREYDVPYHVRLSIDLKIH
VAHWYNVRYRGSAYPPEIILRSDLVERPDPVVLAFDIETTKLPLKFPDAETDQIMMISYM
IDGQGYLITNREIVSEDIEDFEFTPKPEYEGPFTVFNEPDEAGLIQRWFEHVQETKPEIF
VTYNGDFFDWPFVETRAAHHGLNMYREIGFQKDNQGEYRASQAIHMDAFRWVKRDSYLPV
GSHNLKAAAKAKLGYDPVELDPEEMCRMATEESQTLATYSVSDAVATYYLYMKYVHPFIF
ALCTIIPMEPDEVLRKGSGTLCEALLMVQAYHANIVFPNKQEQVFNKLTGDGHVMDSETY
VGGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVEETLRHAIEEEEKIPLEQVTNFNEV
CDEIKKKLLSLKEVPNRIECPLIYHLDVAAMYPNIILTNRLQPSAMVDEATCAACDFNKP
GANCQRKMSWQWRGEIMPASRSEFHRIQQQLESEKFPPLFPNGRPRAFHELNLEEQARHE
KKRLGDYCRRAYKKVRQTKLEERVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKL
SAAQESGDAALVKRCKNMEILYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCYTG
ANIITQARELVEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNI
MVKEGFTNDQYQELVDPASLTYETRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVF
NEDGSLAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYDSVAKVADYWLDVLYS
KAANMPDAELFELISENRSMSRKLEDYGEQKSNTISTAKRLAEFLGDQMVKDAGLSCRYI
ISRKPEGTPVTERAIPLAIFQAEPSVKKHFLRKWLKMPSLHDLDIRSILDWSYYIERLGS
AIQKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHHA
LEAGQAADIEDFGMPARPLQPAILISTKRKRVSQGENSQAVESQEMELTQSWREILGPPP
PTGETQEARLVWLRYHKKKWELQLRQRKERRKRRRLLDGEVQAMGGGVIRDAGPATGLGN
FLRRTARSILDMPWQIVQIAETSHPGLYKLWAVIDSDLHCMKLNIPRVFYVNQKVPKQEE
GATYKKVNRLLPRSNVVYYLYQYSVPEDMYQEHINEINADLSAPDIEGVYETQVPLLFRA
LVQLGCMCMVNKQLVRDLGGREAETYDLEHLEMRSLAQFSYLEPGSVRHIYLYHHSQGHK
ALFGLFIPSQRKASIFVLDTVRSNQMPNLNTLYGAERTALLEKTSEELLPPEKHTFEVRA
ENDVKAIHRALQRILLNYKGERRGPTLIAVQSNWELRRLVAGMPVLEEFPVVPVHVVDEI
SYNVLDWQRHGARRMVRHYLNLDSCLSQAFDMARYYHLPVGNLPHDVSIFGSDLFLARHL
RKHNHLLWLSPTARPDLGGKEADDSRLVMEADDRGSMEINAQGCYSTVCVELDLQSLAVN
TILQSQHVNDMEGGASLGVSFDVIQQASLEEMMSGNQGASAVASYDETALCSNTFRILKS
MVVGWVREITRYHNVYADNQVMHFYRWLRSPSSLLYDPALHRTLHNMMKKVFLQLVAEFK
RLGSTVVYGNFNRILLCTKKRRIDDAIGYVEYITNSIHSREIFHSLSISFSRCWEFLMWM
DLANYGGVKGKLPSSVLYGENGTAQKKGKKNGEEEGSEDEEEADEEEEDGAGEVDEVEEL
IESSWNIMQYLPQTASCQKYFLMIISAYIAAIYHSMQEELRRNAPGATPIKRRGGSQTSQ
QAAGDSTALPGMISFSQEYVSSELTQNFFTITQKIQKKVTGTRSVTQPSEMFPVLPGSHL
PLSNPALEFIKYVCQVLSLDANIVNQVNKLKRDLLRLVDVGEFSEEAQFRDPCNSYILPE
VICHHCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQTQYETESIEMALVEALQKKLMSYT
LQDLACAKCKGVKEANMPLYCTCAGDFELTFPTKSFSEQIKVFRNIAAHYNMNFLEETID
WLLVMSPQIS
NT seq
6873 nt
NT seq
+upstream
nt +downstream
nt
atggttttacaaaacagtggacggtacaagtcggagagaggacaagggggtgaccaggac
catcaacaggatgaccggtcatccatgtcggctgctatccggctggagcgcagccagttc
acagacgagatggacacccgctttgggtttgagaggatgaaggacccaggagagaagact
ggctggctcatcaacatgcaccctacagagattctggacgatgacaaacggatggtcagc
gctgtggactattatttcatccaggaagatggcagcaggttcaaggtacccctccccttt
aagccctatttctacatagccactaaaaagaactgtgagagagaagtcatctcattcttg
tccaagaagttccaagggaaggtggcgaagctggagatgctccctaaggaggacctggat
ctgcccaatcacctggtgggactaaagaggatctacatcaagctttcattcaacactgtg
gatgacctcatgaaggtcaaacgggagatctcgccggcggtgcgcaagaatcgggagagg
gagaagtccaacgatacctacacctccatgttatcaagtgcgttggcaggaggcagtgtc
tctgcagcggatgaagatggcatgtccaagaaaacctcagaccagatggacaacatagtg
gacatgagagagtacgacgtgccttaccacgtgcgcctgtccatcgaccttaagatccac
gtggctcactggtacaacgttcgctacaggggtagtgcataccctccagagatcatactg
agaagcgacctggtggaacgaccagaccccgttgtgctggcctttgacatagagaccacc
aagcttcctctgaaattccctgatgcagaaacggaccaaattatgatgatatcctacatg
atcgatggacagggctacctgatcacaaaccgagagattgtctctgaggacattgaggac
tttgagttcacccctaagccagagtacgagggacccttcactgtattcaatgagccggac
gaggcgggtctcattcagcgatggttcgagcacgtccaagaaaccaagcccgaaatcttt
gtcacctacaatggagactttttcgattggccctttgtggagaccagggctgcccaccac
ggcctgaacatgtacagagagattggcttccagaaggacaaccagggcgagtacagggct
agccaggccatccacatggacgcctttaggtgggtgaagcgtgacagctacctgccggtg
ggcagtcacaacctgaaggcagcggccaaggccaagctgggctatgacccagtggagctg
gacccggaggagatgtgccgcatggccacagaggagtcacagactctggccacttactct
gtgtcggatgccgtggccacgtattatctttacatgaagtacgtccaccccttcatcttt
gctctttgcaccatcatccctatggagccggatgaggtgctgcgtaagggttcggggacc
ctgtgtgaggcgctgctcatggtgcaggcctaccatgccaacattgtcttccccaacaag
caggagcaggtgttcaacaagctgacaggcgatggtcatgtcatggactctgagacctac
gtggggggtcacgtggaggccctggagtccggcgtgttccgcagtgacatcccctgccgc
ttcaaaatgaatccggcggcattcgacttcctgcttcagcgggtggaggaaactctgcgt
cacgccatcgaggaggaggagaagattcccctggagcaagtcaccaacttcaacgaggtg
tgtgacgagatcaagaagaagctcctctctttgaaggaggtccccaacaggatcgagtgt
ccactcatctaccatctggacgtggcggccatgtaccccaacatcatcctcaccaaccgc
ctgcagccctctgctatggttgacgaggccacgtgtgctgcctgcgatttcaacaagccg
ggggccaactgtcagaggaagatgagttggcaatggaggggggagatcatgccggccagc
cgcagtgagttccaccgcatccagcagcagctggaatcagagaagtttcctccgctcttc
cctaacggccggccgcgggccttccatgagctcaacctggaggagcaggcccgccacgag
aagaaacgcctgggcgactactgcaggagagcctataagaaggtccgccagaccaagctg
gaggagcgggtcaccaccatctgccagagggagaactccttctacgtggacactgtgcga
gccttcagagaccgtcgctatgagtttaagggactgcacaaggtgtggaagaagaaactg
tctgcagcccaggaaagtggtgacgctgccctcgtgaagcgctgtaagaacatggagatc
ctctacgattctctccagctagcccacaagtgcatcctcaactccttctatggctacgtc
atgaggaaaggggcccgctggtactccatggagatggctggcatagtgtgctacaccgga
gccaacatcatcacccaggccagagagctcgtggaacagatcgggaggcctctggagctg
gacacggatggtatctggtgcgtcctgcccaacaccttccccgagaactttgtggtgaag
acgagcaacgagaagaagcccaaggtgaccatctcctacccgggcgccatgctcaacatc
atggtgaaggaaggcttcaccaacgaccagtaccaggagctggtggaccctgcctcgctg
acctacgagacgcgggcggaaaacagcatcttcttcgaggtggacgggccctacctggcc
atgatcctgcccgcctccaaagaggagggaaagaaactgaagaaaaggtacgctgtgttc
aacgaggacggctcgctggccgagcttaagggcttcgaggtgaagaggcgaggcgagctg
cagctcatcaagatcttccagtcgtctgtgttcgaggccttcctcaaaggcaccactcta
gaggaggtgtatgactcggtggccaaggtggctgactactggctcgacgtgctctacagc
aaggctgcaaacatgccagacgcggagctgtttgagctcatctcggagaaccgctccatg
tcgcggaagctggaggactatggcgagcagaagtccaacaccatcagcacggccaagcgg
ctggccgagttcctgggtgaccagatggtgaaggacgccgggctgagctgccgctacatc
atctcccgcaagccagagggcacgccggtcacggagcgggccatccccctggccatcttc
caagctgaacccagtgttaagaagcacttcctgcgcaagtggctgaagatgcccagcctc
cacgacctggacatccgctctatccttgactggagctactacattgagagattgggtagt
gccatccagaaaatcatcaccattccagctgccctgcaacaggtgaagaaccccgtgccc
agagtgcgccacccggactggctccacaagaagctgctggagaagaacgacatctacaaa
cagaagaagatcagcgagctgttcaccagcgagggcaagagacaggtggcccatcatgcc
ctggaggcagggcaggcggctgacattgaggactttgggatgcctgcccgacccctgcag
ccggccatactgatcagcacgaagcgcaagcgggtgtcgcagggagagaacagccaggcc
gtggagtcccaggagatggagctcacccagtcctggagggagatcctcggccctccacca
cccactggggaaacgcaggaggcgcgcctggtgtggctgcgctaccacaagaagaagtgg
gagctgcagctgcggcagagaaaggagcgccggaagcgccggcgcctgctggacggcgag
gtccaggccatggggggaggggtgatccgggacgcgggccccgccacaggcctgggtaac
ttcctccgccgcacggcgcgcagtatcctggacatgccctggcagatcgtacagattgca
gagaccagtcaccctgggctgtataagctgtgggctgtgatcgacagtgacctgcactgc
atgaagctcaacatcccgcgggtgttctacgtcaaccagaaggtccccaagcaggaggag
ggagccacatacaagaaggtgaaccgccttctgccgcgctccaacgtcgtctactacctg
taccagtactctgtccctgaggacatgtaccaggagcacatcaacgagatcaacgctgac
ctctctgccccagacatagagggggtctacgagacacaggtccctctgctgttccgggcc
ctggtacagctgggctgtatgtgcatggtcaacaagcagttggtccgggacctgggtggc
cgggaggctgagacgtacgacctggagcacctggagatgaggtccctggcccagttcagc
tacctggagcctgggagcgtccgacacatctacctttaccaccacagccagggccacaaa
gccctgttcggcctgttcatcccctcacagcgcaaggccagcatctttgtcctggacacg
gttcgcagtaaccagatgcccaacctgaacaccctgtatggggcagagcgtacagctctg
ctggagaagaccagcgaagagctcctgccccccgagaaacacacctttgaggtgcgggct
gagaacgacgtgaaggccatccaccgagccctgcagcgcatactgctcaactacaagggg
gagcgccgcgggcccaccctgatcgcagtgcagtccaactgggagctgaggcggctggtg
gcgggcatgccggtgctagaggagttcccggtggtgccggtgcatgtggtggacgagatc
agctacaacgtgctggactggcagcgccacggtgcccgccgcatggtccgccactacctc
aacctggacagctgcctgtcgcaggcttttgacatggccagatactaccacttgccggtg
gggaacctgccccacgacgtgtccatctttggttctgacctgttcctggccaggcacctg
aggaaacacaaccacctgctgtggctgtcccccaccgccaggcctgacctggggggcaag
gaggccgacgacagcaggctggtgatggaggctgatgaccggggctccatggagatcaac
gctcagggctgctactcaacagtgtgtgtggagctggacctgcagagtttggctgtcaac
accatcctgcagtcgcagcatgtcaacgacatggagggaggagccagcctgggcgtcagc
tttgacgtcatccagcaagcctcgctggaggaaatgatgtcggggaaccagggcgccagt
gccgtggccagctacgacgagaccgccctctgctccaacaccttcaggatcctgaagagc
atggtggttggctgggtgcgggagatcacgcggtaccacaacgtctacgccgacaaccag
gtgatgcacttctaccgctggctacgctcgcccagctcgctgctttacgacccggcgctg
caccgcaccctacacaacatgatgaagaaggtattcctccaactggtggcagagttcaag
cggctgggctccaccgtggtgtacgggaactttaaccgcatcctcctttgcactaagaag
cggaggattgacgacgccatcggctacgtggagtacatcaccaacagcattcactcgcgg
gaaatcttccactccctctccatctccttctcccgctgctgggagttccttatgtggatg
gatctggccaactatggaggcgtgaagggcaaactgccctccagcgtcctatatggagag
aacgggacagcacagaagaaggggaagaagaatggagaggaggagggcagcgaggacgag
gaggaagctgacgaggaggaggaggatggagccggagaggtggatgaggtggaggagctg
atcgagagcagctggaacatcatgcagtatctgcctcagaccgcctcctgtcagaaatac
ttcctcatgatcatctccgcctatattgctgccatctaccacagcatgcaggaggagcta
agacgcaacgccccgggagccacgcccattaagaggcggggcggaagccagacttcccag
caggcagcaggagattccacagcacttcccggtatgatctccttctctcaagagtatgtg
tccagcgagctgacccagaacttcttcaccatcacccagaagatccagaagaaggtgaca
ggcacccggagcgtgacccagccctcggaaatgttccccgtcctgcctggctcccacctg
cctctcagcaacccagcccttgaattcatcaaatacgtctgccaggtcctctccctggat
gccaacatagtgaaccaggtgaacaagctgaagagggacctgttgcgtctggtagatgtg
ggtgagttctcggaggaagcccagttccgcgacccctgcaactcttacatcctgcccgag
gtcatctgccaccactgcaacttctgccgcgacctcgacctttgcaaggacccctcggtg
gcacaggacggctctgttttgccccagtggttctgctccaactgccagacccagtatgag
actgagtccattgagatggccctggtggaggccttgcagaagaaactcatgagctacact
ctgcaggacctggcttgtgccaagtgtaaaggagtgaaggaggccaacatgcctctttac
tgcacttgtgcaggagactttgaactcaccttccccaccaagagtttctcagagcagatc
aaagtgttccggaacatcgccgcacactacaacatgaacttcctggaagagaccattgac
tggttactggtcatgagtccacaaataagctag
DBGET
integrated database retrieval system
