Oncorhynchus gorbuscha (pink salmon): 124036065
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Entry
124036065 CDS
T07892
Name
(RefSeq) vacuolar protein sorting-associated protein 13A-like
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124036065
Membrane trafficking [BR:
ogo04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
124036065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
Fer4_11
DUF5764
Motif
Other DBs
NCBI-GeneID:
124036065
NCBI-ProteinID:
XP_046206143
LinkDB
All DBs
Position
LG05:complement(54201886..54256486)
Genome browser
AA seq
3220 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDGVYLLIVPTASIKYDAEKEEKQLQEARQRELQRIEE
TKQKAAEQENPALEKQDTFVEKLVTQVIKNLQVKISNIHVRYEDDVTNPNCPFSFGVSLQ
NLSLQTADENWMPCLLDEKAKLFFKLVQLDNLFAYWNVNSMLYSNHMPDEALRCLQDSIP
GGSTPMNHDFIFRPITADAKLRMNPWSDVDFSSPKVDLVVNLREVAVELNRPQYISILEL
LGSVDMMSRNLPYRKYRPQVHVHTNAYLWWQYVITGIMEVDVKPRLHMWSWQHIRCHRQT
VKQYRELYKAKITSKKPTEKQLRELEEPERTLDIFNITLARQQAEMEASKAGLRIFRPGV
KVEEEESQGWLGWMWSGWSGDCGAEAKDVKTGAFDELMTSAEKAKLYTAIGYSEIAVNHN
LPKNFEDMKINFHMERMSVSMKDNKDQNEILKLTVEDLKSMLTQRPGAQAIKLSAQLSLF
EVTGLASNRPAPTLLSSRKAATVTGTPLLDILFETNPLDESADQRLRVESQPLEIIYDAV
TVNSMSAFFSPPDDLQLDDLTNATLMKLEQFRDRTSTGLMYVIETQKVLDLNVNLMASYV
IVPQTGFYDSTQNLMLLDLGHFKVSSLSREGLPQLSVGRSTIEDIMSRAYDSFDVQLSSL
QFLYSKPDGDWKKARKLRQSALHILEPVDVKVVFSRAMVVTDSRMPKFKISGELPLLSLR
ISDDKVRGVLELIDSIPLPESRPAPRSTNAHSTSKALKQSYTPQLTPRKPTMAELRNSLI
WESGSEEDLFYDAPSSPIGDRPFFPDNMPSPLQRSDSVKRRGLVKKDPKKNMTEFLMTFE
ISKLSVQLCRLSGGEEVTVLHLEIEGLGTELKLRTFDMTSYMFLREICLECPEYMDSEEK
KVHLITTLDNTEDDLLTLEYTKADKNGPEFKSEYKNTEQSVKVNFSSLDIHLHTEALLNA
MNFLISLHPPTKEVVPSQEELPTIPEEDEGEGEEGEKKEGSAVAKKTSSKKSKFEDVVNL
HIRADLNCLKVFIRGQSHRIAEIRIEGLVSEVLMRKKAVEVLANLKNIVILDCDKEALYK
QCVSIADEEVFAFRMVNHTEATEGDAYLDMGKVDTSVTLTVGCIQVIFLNKFVSSILAFI
NNFQVAKEALAEVTVQAAEKAATGVMELAERSTRISLDVDFNAPVVFLPQSSSSANVIVA
DLGMVTVKNRFAMVPSQMHVKIPPVMDTMTVGLSDLKMYRTTFEEGRFQGEIQLLKPVNL
DLSIQRNLSASWYHSIPDIEITAHLKPMNLILGQDDLTVVLRTLSGNLSETSDSASPPPP
PRTVDRSDTVSTKGSQASGGNTVVTAAVVETQKSTKLKSTLKLDFKFDSMTLVLYSPNGT
EVQVLDSRDEQLKLAEFTLGTISTSVHMFSDGSMKASFKLTDCLLDDKRCRVKKITARMM
AMRPGAERNVMVEVNYKQGRDGTSLDTVVQDVYLCASMEFLLTVADIFLKASQQGFSSAT
PKNSSSTKPTAAAASKESAPVGVVAKSEINVLVKNPEIVFVADLTRADAPALVMTTECEL
VMKSDLDGQLMTAVVKDLKVVACPFLKEKRNKETTVLQPCQVFFKSTQSSTSPQAMEVCI
NALTFKVSPIIINTVITIQSVLSPAGAETPQSELESPVPPDLWERRSWRDLKLWFLEEEG
KDEDAQSLVPLIPQGESLQLAINSICLTLEAGVGHRTVPMLLAKSSFHGDVKNWSTLINL
HSQLNLEVHYFNEVMGVWEPLLEPLEDETRDGFRPWTLGLKMKKKPVKYTGISEEVDYSI
PDYKTVISISSKDQLNITLSKCGLGMLSNLGTAFAEAAKQASDSFQKDEAPFVVKNRLGL
TVSVVHSELFSPLGREATARRVELQDGESLNMDYRRTTTHSDQFSAMTSLVAKDYYIQPT
PVGHTSTGMIPLIKVGRGMYSVMHKDSGVTRFLVCQIYSVEGSKYIKIRSPFQIINHFSI
PFRVMEGSTSLGISLPTEEFCVPLDSYRSELRLQPVTEGDNQYDCSEGFSYELVSQQPGA
RVQQTCHRHGDGAGVLMVNIVPLKDTVTSQHTGMAGEHFDEPYILHLWPSVLLRNLLPYP
ITYRLQDSEEPTPITLMDGHSAQLHTAIMDQSSLELRLLDYLGQDWQAHYGLCGDLDEIT
FIVFSSLRDEEEVSAELDIAVHVKYDAGQTEVAIHSPYWMVNKTGRLLQYKADDIHRKHA
MDYDMPLLFSFKPHNFLQNNKVRLMISDSDLSDDFSLDTVGSYGEVKCKGRLKDYVIGVK
IDASSFSLTRIVSFVPYYLLVNRTKHVIWVGEEGQDDWTEARPQQAAIPFWPERDSKKLK
VKVEGSLSTPQTMDFTKPENCLLLHLDNTLGGVIMDVNLSDHSIIIRFSDYHDGAAPFLI
INHTQEQTVEFYQSSQKEKDKLSPGKVMYYTWAEPTGSRSLAWQCGSYSGELRSEEDLRL
DVNEEGKLYLISFYEGLQRVALFTEDRRIYKLLCESEKAELAEQEIILSLQDVGVSLVNN
SSRQEVSFIGITSSDVVWESKPKKKSRWKPLSGKDAELLETHFKEYTESGPVDNAILDLE
NNFQVSLTHNGQDMRMMQPYDAPIRRSFLPGVKVEYSVSARQSAYRVQINRIQIQNQLPG
AIFPYVFYPIKLPKSVTMDSEPKPLTDISIVTRAAGHSDISRIKYFKVLIQEMDLKLDLG
FLYAILDLFTPENASVMTSEQQVELFEKDIEYLKTELNDVSATDTSPISLYEYFHISPIK
LHLSFSLSSGGEDGNKEKRETEIIPVQSLNLLLKSIGATLTDVQDVVFKLAFFELTFQFR
TRQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFFYEPYQGAIQGP
EEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAMTMDEEYQQKRREAMNKQPSG
LREGLTRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGKGLVGAVARPTGGIID
MASSTFQGIKRAAETSQDVESLRPPRFIHEDGVIRPYKEREGIGSQMLQKIENGRFAKYR
YFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFDEFTKEPMIVEGRRLRIEAKE
RVKSVFHAKEFGKIINFRSPEIAKWVLTKLEDARESLHKY
NT seq
9663 nt
NT seq
+upstream
nt +downstream
nt
atggtcttcgaaagcgtggtggtagatgtcctaaacaggtttttaggggattacgttgta
aaccttgacagctcacaactcaagctcgggatttggggaggtgatgcagtgctcagaaat
cttgaaataaaggaaaatgccttgagtcaacttgacattccttttaaagtaagagcaggg
catataggacgcttggagttgaagattccatggaagaatctgtacacccagtcagtggaa
gccacgctggatggagtctacctactcatcgtgcccacagccagtataaagtatgatgca
gagaaggaggagaaacagctccaggaggctcgtcagagggagctgcagaggatcgaagag
accaaacagaaagcagcagagcaagaaaaccctgcacttgagaagcaggacacctttgtg
gagaaacttgtgacgcaggtgatcaagaaccttcaagtgaagatctccaacatccacgtc
cgctatgaagatgatgtcaccaaccccaattgccccttttcatttggagtgtcactgcag
aacctcagccttcagacagcagatgagaattggatgccttgtctcctggatgagaaagcc
aagctgtttttcaagcttgtccagttggacaatctctttgcttactggaatgtgaactcg
atgctgtactccaatcacatgccagatgaggccctgcgatgcctccaggacagcatccca
gggggttccactcccatgaaccacgatttcatttttcgtccgataacggccgatgcgaag
ctgcgcatgaacccctggtcggatgtggacttctcctctcccaaggtggacctggtggtc
aacctaagagaggtggccgtggagctcaacagaccacagtacatcagcattctggagctc
ctgggatcagtggatatgatgtcacgcaacctgccctacaggaaataccggccgcaagtc
cacgtgcacaccaacgcctatctatggtggcagtatgtgatcacaggcatcatggaggtg
gacgtgaagccgcggctgcacatgtggtcgtggcagcacatccgctgccaccggcagaca
gtcaagcagtacagagagctctacaaggccaagatcaccagcaagaagcccactgagaag
cagctcagggagctggaggagcctgagcggactctggatatttttaacatcactctggcc
aggcagcaagctgagatggaggcaagcaaagcggggctgcgtatctttcgtccgggggtg
aaggtggaggaggaggaatctcagggctggttgggctggatgtggtctggctggtcagga
gactgtggcgccgaggccaaggatgtcaaaaccggagcttttgacgagcttatgacttct
gctgagaaggccaaactctacaccgccatcggctacagtgagatagctgtcaatcataac
ctgccaaagaactttgaggatatgaagattaatttccacatggagaggatgtctgtctca
atgaaagacaacaaggaccagaatgaaatcctcaaactcacagttgaagatctgaaatcc
atgctgacccagaggcccggagcacaagccattaagctgtcggcccagctcagtctgttt
gaggtgacaggactagccagtaaccggccggcacccacattgctgtcgtcaaggaaggct
gccacggtaacggggacacccttgttggacatcctgtttgagaccaaccctctggacgag
agcgctgatcagcggctccgcgtcgagtcccagcctctggagatcatctatgatgctgtg
acggtaaacagcatgtctgcgttcttctcaccgcctgatgacctccagctggacgatctg
accaacgccactctcatgaagctggagcagttccgagaccgcacctccacaggactgatg
tacgtgattgagacccagaaggttcttgatctgaacgtcaacctcatggcctcctacgta
atcgtcccccaaaccggcttctacgactccacccagaacctcatgctattggacctgggc
cacttcaaggtgtctagtctgagcagagaggggctgccgcagctctctgtagggagaagt
actatagaggacattatgtcccgggcctacgacagcttcgacgtccagctcagcagcctt
cagttcctctacagcaaaccagatggagactggaagaaagcccgtaagctgaggcagtcg
gccctccacatcctggagcctgtcgacgtcaaggtggtgttcagcagagccatggtggtc
acagattcccgcatgcccaagtttaaaatctccggggagctgcccctcctgtctctgagg
atctctgatgataaggtgcggggcgtgctggagctgatcgacagcatcccgctgccagag
agcaggccggccccgcgcagcaccaacgctcactcaacatccaaggctttaaagcagtcg
tacacccctcagctaacccccaggaaaccaaccatggctgaactgcgcaactccctgata
tgggaatcaggctcagaggaggacctgttctacgatgctcccagctctcctataggagac
cgtccgttcttccccgacaacatgcccagccccctgcagcgctccgactcagtcaagagg
agaggtctggtcaagaaagaccccaagaagaacatgaccgagttcctcatgacatttgag
atcagcaaactgtccgttcagctgtgtcgtctctctggaggcgaggaggtcacagtgttg
cacctggaaatcgaggggctgggcaccgagctgaagctacgtaccttcgacatgacatcc
tacatgttcctacgagagatctgcctggagtgccccgagtacatggattcagaggagaag
aaagtgcacctgatcaccactctagacaacacagaggatgacctcctcacattggagtac
actaaggctgataagaatgggccagaattcaagtctgagtacaagaacactgaacaatca
gttaaggtgaacttctcgtctctggacatacacctgcacacggaggctctgctcaatgcc
atgaacttcctgatcagtctccaccccccgaccaaggaggtggtgcccagccaggaggag
ctgcccaccatccccgaggaggacgagggagagggggaggaaggcgagaagaaagaggga
tcggctgtggcaaaaaaaacctcttctaagaagtcaaagtttgaggatgtggtgaatttg
cacatcagagccgatctcaactgtctgaaggttttcatccgaggccagagccacaggata
gcggagatccgcatcgagggcctggtgtcggaggtgctgatgaggaaaaaagcggtagag
gttctggccaacctgaagaacatagtcatcctggactgtgataaggaggcgttgtacaag
cagtgtgtgtccatagccgatgaggaggtgtttgctttccgcatggtgaaccacactgaa
gccacggagggcgacgcctatctagacatgggtaaagtggacaccagcgtcaccctgacg
gtgggctgcatccaggtcatcttcctcaacaagtttgtctcctccatcctggccttcatc
aacaacttccaggtggccaaggaggccctggctgaggtgacggtgcaggcagcggagaag
gcggccacgggggtgatggagctggctgagcgcagcacccgcatctccctggacgtggac
ttcaacgctcccgtcgtcttcctgccgcagtcgtcgtcctccgccaacgtcatcgtggct
gacctcggtatggtcacggtcaagaaccgcttcgccatggtcccctcccaaatgcacgtc
aagatccctcccgtcatggacaccatgaccgtgggcctcagcgacctcaagatgtacaga
accacctttgaggaggggaggtttcagggggaaatccagcttctgaagccggtcaacctg
gacctgtccatccagaggaacctgtcagcctcctggtaccacagcatccccgacatagag
atcactgctcacctcaaaccaatgaatctgatcctgggtcaggatgatttgacggtggtg
ttgaggactctgagtgggaacctgtcagagacgtcagactctgcttccccccctcctcct
ccgcgtacagtggaccgctccgacacggtctctaccaaaggctcacaggcgtcaggaggc
aacacggtggtaactgctgcagtggtggagacccagaagagcaccaagctgaagagcaca
ctcaaactggacttcaagtttgactccatgaccctggtcctgtacagccccaatgggact
gaggtgcaggtgttggactcgagggatgagcagctgaagctggctgagttcaccctggga
actatctctacatctgtccacatgttctcagacggatctatgaaggcctccttcaaactc
acagactgcctgctcgacgacaaaagatgcagggtcaagaagatcactgccaggatgatg
gcgatgcgtccgggcgctgagaggaatgtgatggtggaggtgaactacaagcagggccgc
gacggcacctctttggacacggtggtgcaggacgtgtacctctgtgccagcatggagttc
ctgctcactgtggccgacatcttcctcaaagccagccagcagggcttctcctccgccacc
cccaagaacagcagtagcactaaacccactgcagccgcagcctccaaggaatctgctcca
gtgggggtggtggcaaagtcagagattaatgttctggtgaagaaccccgagattgtgttt
gtggccgacctgacacgtgccgacgccccggccctggtcatgaccactgagtgcgagctg
gtgatgaagagtgacctggacggtcagctgatgactgcggtggtcaaggacctgaaggtg
gtggcctgccccttcctgaaggagaagaggaacaaggagaccactgtgctgcagccctgc
caagtgttcttcaagagcacacagtcctccacatccccgcaggccatggaggtctgcatc
aacgcactcacatttaaggtgtcgcccatcattatcaacaccgtgattaccattcagtcg
gtgctgagcccggccggtgccgagacaccccagtctgagctggagagccccgtgccccca
gacctgtgggagcgccggtcctggagggacctcaagctgtggttcctggaggaggagggt
aaagacgaggatgcccagtccctggtcccgctgattccccagggcgagtccctgcagttg
gccatcaactccatctgccttacactggaggcaggggtgggccaccgcaccgtccccatg
ctcctggccaagtcctccttccacggtgacgtcaagaactggagcaccctcatcaacctg
catagccagctcaacctggaggttcactacttcaacgaggtgatgggggtgtgggagcca
ctgctagagcccctagaagacgagacccgagatggattcagaccctggaccctgggatta
aagatgaagaagaagccagtgaagtacacaggtatatcagaagaagtggactacagcatc
cctgactacaagaccgtcatcagcatcagcagcaaggaccaacttaacatcaccctctcc
aagtgtggactgggcatgctcagtaacctgggcacggcctttgcggaggcggccaagcag
gcatcggatagtttccagaaggacgaggctccgttcgtcgtgaagaaccgtctaggtctg
actgtgtcggtggtgcacagtgagctgttcagcccactgggtcgcgaggccacggcgcgc
cgggtagagctgcaggacggagagagcctcaacatggactaccgtcgcaccaccacccac
tcagaccagttctctgccatgacttcgttggtggccaaggactactacatacagcccact
ccggtgggccacacttcaacaggcatgatcccgttgatcaaagtggggcgtggcatgtac
agtgtcatgcacaaagactctggggtcacgcgtttcctggtctgtcagatctactctgtg
gagggaagcaagtacatcaagatccgctctcccttccagatcataaaccacttctccatc
ccattcagagtgatggagggctctaccagtctggggatatcactgcctacagaggagttc
tgtgtgcctctggactcctacaggtcagagctaagactgcagccggtaaccgagggagac
aatcagtacgactgctccgagggtttcagctacgagttggtgagccagcagcccggtgca
cgtgtgcagcagacctgtcatcgccatggtgacggtgctggcgtcctcatggtcaacatt
gtccctctgaaagacacggtgacatcacaacacacaggaatggccggggagcactttgac
gagccctacatcctgcacctgtggccctccgtcctgctccggaaccttctgccttacccc
atcacctatcgcctacaggacagtgaagagcccacccccatcaccctgatggacggccac
tcggcccagctgcacaccgccatcatggaccagtccagcctggaactccgcctcctcgac
tacctgggtcaggattggcaggcccactacggtctctgtggcgacctggatgagatcacc
ttcattgtgttcagctctctgcgcgatgaagaggaggtgagcgcggagctcgatattgca
gtgcatgtgaagtacgacgcgggccagactgaggtggctatccattctccctactggatg
gtgaacaagacgggccgcctgctgcaatacaaggcagacgacatccaccgcaaacacgcc
atggactacgatatgcctctgctcttctccttcaagccacacaactttctgcagaacaac
aaggtgcggctgatgatctcggacagcgacctgtcagatgatttctccctggataccgtg
ggtagttatggtgaagtgaagtgtaaagggaggcttaaagattacgtgatcggagtgaag
atcgacgccagcagtttcagcctgacccgtatcgtaagctttgtgccatactacctgtta
gtgaacaggaccaaacatgtgatctgggtgggagaggagggccaggacgactggaccgag
gccagaccacaacaggcagccatcccgttttggcctgagagggactccaagaagctcaaa
gtcaaagtagaaggcagtctgtcaactcctcaaaccatggacttcaccaaaccggaaaac
tgcctgctgctgcatctggacaacactctgggcggggtcattatggatgtgaacctatcg
gaccactcgattatcatccgtttctctgactaccacgacggggccgcccccttcctcatc
atcaaccacacccaggagcagacggtggagttctaccagagtagtcagaaggagaaggac
aagctaagccccgggaaggtaatgtactacacctgggctgaacccactggatcgcgctct
ctggcctggcagtgtggcagctacagcggcgagctgaggagcgaagaggacctgcggttg
gacgtgaacgaggagggtaagctgtacctcatctcgttctacgagggcctccagcgggtg
gcgctgttcaccgaggaccgacgcatatacaagctgctgtgtgagagtgagaaggccgag
ctggccgaacaggagataatcctctccctgcaagacgtgggcgtctccctggtcaacaac
agcagccgccaggaggtgtccttcatcggtattaccagttcagacgtggtgtgggagtcc
aagccaaagaagaagtctcgctggaaacccctgagtggaaaagatgccgagctgctggag
acccacttcaaagagtacacagagagtggaccagtggacaacgccatcttagacctggag
aacaacttccaggtgtctttgacccataatgggcaagacatgaggatgatgcagccatat
gacgctccaatcaggaggagcttcctgccaggggtgaaggtggagtacagcgtatcggcc
cgccagagtgcctaccgtgtccagatcaaccgcatacagatccagaatcagctacctgga
gcaattttcccatatgtcttctaccctataaaactacctaagtctgtcaccatggactca
gagcccaaacctttgaccgacatcagcattgttaccagggcagcagggcactctgatatc
tcacgcatcaagtatttcaaggtgctaatccaggagatggatctgaagttggacctgggc
ttcctttatgccatcttggatctgttcactccggagaacgccagcgtgatgacgtcagag
cagcaggtggagttgtttgagaaggacatagagtatctgaagacggagctcaacgacgtc
tcggccactgacacatcccctatcagtctctatgagtacttccacatctctcctatcaag
ctgcacctcagtttctctctgagttctggaggagaggatggtaacaaggagaagagggag
accgagatcatccctgtccagtccctcaatctgctgctgaaaagcatcggagcaaccctc
actgacgtgcaggatgtcgtcttcaaattggccttcttcgagctgaccttccagtttcgc
actcgccagcaactacaatgggaggtcatcagacactactcgaaacaggcgataaagcag
atgtatgtgctggtgttgggcttggacgtgctgggaaacccctttggactgatccgaggt
ctgtcggagggagtggaggctttcttctacgagccctatcagggagctatccaggggcca
gaggagtttgtggagggtatggcgctgggggtgaaagcgctggttggaggagcagtaggt
ggcattgcgggcgctgcctccaggatcacaggcgccatggcgaagggtgtggctgccatg
acgatggacgaggagtaccagcagaagagacgggaggctatgaacaagcagcctagcggc
ctgagagagggcctgacccgcggagggaaaggactggtgtctggctttgtcagtgggatc
acagggattgtcaccaagcctattaaaggtgctcagaaggagggcgcggcgggcttcttt
aagggtgtgggcaaggggctagtgggtgctgtggccagacccactggaggcatcattgac
atggccagcagcaccttccagggcatcaagagggcagctgagacatcccaggatgtggag
agtctgcgtccgcctcgcttcatccatgaggacggggtcatccgaccatacaaggaaaga
gagggcatcggcagccagatgctacagaaaattgaaaacggaaggttcgccaagtacaga
tactttgcgcacgccaaagtgaacgagtccgatttcctgatgatcaccaaaaggggaatc
tttttcgtgaccaaaggtacatttgggcagctgacctgcgagtggcagtatctgttcgac
gagttcaccaaggagcccatgatcgtggaggggaggcggcttcggatcgaggccaaggag
agagtgaagtctgtgtttcatgccaaagagtttgggaagataataaacttcagaagtcca
gaaatagccaagtgggttcttaccaagcttgaagacgccagggagagtctacacaaatac
tga
DBGET
integrated database retrieval system
