Oncorhynchus gorbuscha (pink salmon): 124036402
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Entry
124036402 CDS
T07892
Name
(RefSeq) THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124036402
09122 Translation
03013 Nucleocytoplasmic transport
124036402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124036402
03041 Spliceosome [BR:
ogo03041
]
124036402
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124036402
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124036402
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
124036402
NCBI-ProteinID:
XP_046206915
LinkDB
All DBs
Position
LG05:68865089..68893391
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AA seq
683 aa
AA seq
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MSDALKKRKSKVLRSEMGTPEVKRGRGEGDQDVRVYSEEVELDGRDPEEDYQQYKLTCEA
LAQLMNDIQELKANRAKDGCAEVEQKRMQSCIHFMSLKKLNRLAHMRLKRGRDQTHEGKQ
RVDVLHLQLQNLLYEVMHLQKEISKCLEFKSKHEEIDLVSVDEFYQEAPPEVSRTPLTKD
DTHQLTLARLDWELEQRKRLAEQYKESLSSKEKIQKGIEVKKEHLSSLQPGLNAIMQASL
PVQEYLSMPFEQTQSQTEIARHLPTSLYVLLVQASAYGQACDKSLSVSISGDVDEAKALS
KPPEDSQDDDSGDSDAEEEQEKTKRRRPTTGGQLDDKRCEILKRHPLSLCLDLRCKDGSV
LHLFFYYLMNLNIMTVKAKVSSATDLTGAISAGELLNSGTLLNCLYANDQGCGTPNPSNR
YQFDKVGISSFGDYVAELGHPYLWVQSLGGLKFPSDTPEGLHAGSSLSASHMESTMKLLR
GRVLSRLALHKQFSSLEHSIVPVSSDCKHLFPAKVLSRLARWTTITHQEYTNLVFTQHVS
EAGLARETDLFFMAVLERGTARLQAAVVLNPRYPVISPLFAVSISWKGERSGRTDDNLRA
MESEVNVFKSELQGPRPGHQLLTNQVARLGVCLDVYLETDGQDDSVEGPREFPREKMCLR
TVRGPNRLKPFKYNHPQGFFSHR
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgccctgaagaagcgcaagtcgaaggttctccgcagcgagatgggcacaccg
gaggtgaaacgtggccgtggagagggggaccaggatgtacgtgtgtatagtgaggaggtg
gagctggatggcagggacccagaggaggactaccagcaatataaactaacctgtgaagct
ctggcccaactgatgaacgatatccaggagctgaaagccaacagagccaaggatgggtgt
gctgaggtagaacagaagaggatgcagagctgtatccactttatgagtctgaagaaactc
aaccgcctggctcacatgagactgaagagggggagagaccagacgcatgagggcaagcag
agagtagatgtgttgcacctgcagctccagaacctgctctatgaggtcatgcacctgcag
aaggagattagcaagtgtctggagttcaagtcaaagcatgaggagatagatcttgtgagt
gtagatgagttctaccaggaggccccccctgaggtatcccgcacccccctcaccaaggac
gacacccaccaactcacgctggccaggctggactgggaactggagcaaaggaagaggctg
gctgagcagtacaaggagtctctctccagtaaggagaagatccagaaaggcattgaggtg
aagaaggaacacctgagttctctacagcctggactcaacgctatcatgcaggcatccctt
ccagtccaggagtatctctccatgccgtttgaacagacccagagtcagacggagatcgcc
cgccaccttcccacctctctctatgtcctactggtacaggccagtgcttacggacaggcc
tgcgataagagcctgagtgtgtccatcagtggagatgtggacgaggccaaagctctgtct
aaacctccagaggactcccaggatgatgattctggggattctgatgcagaggaggaacag
gagaaaacgaagaggaggagacctactacaggtggacagctggatgataagagatgtgaa
atactgaagagacaccctctctccctctgcctagacctcagatgcaaagacggcagtgtg
ctgcatctgttcttctactacctgatgaacctgaacatcatgactgtcaaggccaaagtc
tccagcgccacagatctcactggagccatcagcgccggggagctgttgaactctggcacg
ctgctcaactgcctgtatgccaacgaccaggggtgcggaacgcccaacccctctaatcgc
taccagtttgataaagtggggatcagttcatttggagactacgtggcagaactgggtcat
ccctacctgtgggtgcagagtctgggaggactgaagttccccagtgacaccccggagggt
ttgcatgcaggcagttctctgagtgccagtcacatggaaagcaccatgaagctgctgaga
ggacgagtcctgtcacgcctggccctgcacaaacagttctcctcactagagcacagtatt
gttccagtgtccagtgactgcaagcacctgttccctgctaaggttctctctcgcctggct
cgctggactaccatcacacaccaggagtacacgaatctggtgttcacgcagcatgtgtca
gaagcaggtctggctcgggaaactgacctcttcttcatggccgtgttggagagaggaaca
gctcgtcttcaggctgcggtggtgttgaacccccgttacccagtcatttctcctctcttt
gctgtctcaatcagctggaagggggagcgcagtggacgtactgatgacaaccttcgagcc
atggagagtgaggtgaacgttttcaaatcagagctccaggggccccgcccaggccaccag
ctgctgaccaatcaggtagctcgtctgggtgtctgtctggatgtgtacctggaaactgat
ggacaggacgacagcgtggagggaccaagggagttccccagagagaagatgtgtctacgc
actgtcaggggtccgaaccgtctgaagccattcaagtacaaccacccccagggcttcttt
agtcaccggtga
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integrated database retrieval system
