Oncorhynchus gorbuscha (pink salmon): 124036692
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Entry
124036692 CDS
T07892
Symbol
smarca2
Name
(RefSeq) probable global transcription activator SNF2L2 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124036692 (smarca2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124036692 (smarca2)
03036 Chromosome and associated proteins [BR:
ogo03036
]
124036692 (smarca2)
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124036692 (smarca2)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
124036692 (smarca2)
Chromatin remodeling factors
BAF complex
124036692 (smarca2)
PBAF complex
124036692 (smarca2)
GBAF(ncBAF) complex
124036692 (smarca2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
BRK
HSA
QLQ
ResIII
HDA2-3
DEAD
Pepco
Motif
Other DBs
NCBI-GeneID:
124036692
NCBI-ProteinID:
XP_046207494
LinkDB
All DBs
Position
LG05:complement(97575828..97699166)
Genome browser
AA seq
1615 aa
AA seq
DB search
MSTPTEHAGGMSQPHPGPSPCPGPGPSPSSGPPSGPPSLQGQGAGDYLQDTMLTMHQPME
GVDEKGMGDETNYGQMKGVGMRALHSGMGPSQSPLDQHINQGYMPPQPSPLGVPEHASSP
LSRGGPTPPMPPQMSPVPSGSMIPQMDPQSAMGPQGPLGRGCSSFSPVQLQQLRAQILAY
KILGRGQPLPENLQLAVQGKRSLPTMQQQQQQQPSTGSPYSRPPGMSSMSGPQSGPGPTI
TMPGQNQTHGPKPWPEGQGGDTPSNPQKILAPPPSGRPSPAPPQAPPPGPMSGPSITHQP
QGQQPSPVITLQQKQNRVTPIQKPQGLDPTEILQEREYRLQARIAHRIRELESLPGALPP
DLRSKATVELKALRLLNFQRQLRQDVVQCMRRDTTLETALNSKAYKRSKRQTLREARMTE
KLEKQQKMEQERKRRQKHQEYLNSILQHAKDFKDYHRSITAKMQKQNKAITTWHTNTERE
QKKETERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTDLVYEHKAA
QAANMKKKKKKQKKKTIDESGEGMSGIGPDGEPMDESSQMSELPVKVIQTETGKVLQGLD
APKSSQLEAWLEMNPGYEVAPRSDSEESGSEFEDEDEEEVPGASSRPDSQSEEKKIIDPN
SGEFPEKVTKHIIESAKQDVDDEYTVPETELTIFQQSYYGVAHAIIERVDKQSSLLINGM
LKHYQVQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLIIVPLS
TLSNWVYELDKWSPSVVKISYKGTPAMRRGLVAQLRSGKFNVLLTTYEYIIKDKQILAKI
RWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIF
KSCNTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVE
YVIKCDMSAIQRVLYRHMQGRGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFP
HIEESFAEHLGFPNGVISGHELYRASGKFELLDRILPKLHVTNHRVLLFCQMTSLMTIME
DYFAYRNFLYLRLDGTTKSEDRAALLKKFNEKGSQYFVFLLSTRAGGLGLNLQAADTVVI
FDSDWNPHQDLQAQDRAHRIGQKNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGM
FDQKSSSHERRAFLQAILETEEQNEVGHGGVGIKIKCSALQEEEKSQVAMEEDEVPDDET
LNQMIARNEDEFELFMSMDLDRRREDARNPKRKPRLMEEDELPSWIVKDDAEVERLTCAE
EEEKIFGRGSRRRGDVDYSDALTEKQWLRAVEDGNLEEMEEEIRLKKSRKRRRRGEKDGG
REEGGEKAKKRRGRPPAEKLSPNPPKLTKQMNAIIDTVINYRDRSNRQLSEVFVQLPSRK
ELPEYYELIRKPVDFKKIKERVRSHKFRSVSDLEKDVMLLCHNAQTFNLEGSQIYEDSIV
LQSVFKSARQRIVKEEESEEDSDDDDDDDDDDDEEESEAESNSVRVKIMLGKDGGGSSIG
ARHHNKDKGKKRLSRSKVKPVVSDDDSDEDQDDNFRRKRISLRRAEVKMSEEEEG
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctacagagcatgcgggtggtatgtcccagccccacccgggtccctctccg
tgcccaggaccaggcccctcccctagctccggaccccccagcggaccccccagcctacag
gggcagggggctggggactaccttcaggacaccatgctcaccatgcaccagccgatggag
ggcgttgatgagaaggggatgggagatgagactaactatggccagatgaagggagttggg
atgagggcactacacagcggaatgggcccttcacagagccctctggaccagcacatcaac
caaggctacatgcccccacaaccctcccccctgggtgtcccagagcacgcttccagcccc
ctatccaggggcggccctacgcctcccatgccccctcagatgtcccctgtcccgtcgggc
tccatgataccccagatggacccccagtcagccatgggtccacaggggcctcttggtcgt
ggctgctcctccttcagccctgtccaattacagcaactccgggcccagatcttggcctat
aagattctggggcggggccaaccgcttcctgaaaacctccagctggcggtccagggcaag
aggagtctgcccaccatgcagcaacaacagcagcagcagccgagcactggcagcccctac
agcaggcctcctggtatgtcctctatgtctggccctcagtcaggccctggtcccaccatc
actatgccaggacaaaatcagacacacggacccaaaccctggcctgaaggccaaggtggt
gatactcccagcaacccccagaagattctagctccgccccccagtggtagaccttcacct
gccccaccccaggctcctcctcctggacccatgtccggcccctctattacccatcagccc
cagggacagcagccgtcgcccgtcatcacactgcaacagaaacagaaccgcgttacgccc
atccagaaaccacagggcctggaccccacagagatactgcaggagagagagtacaggctg
caggctcgtatcgctcaccggatccgggagctggagagtctacctggagctctgcctccg
gacctgaggagtaaagccacagtggaactcaaggctttgagacttctcaacttccaacga
cagctgcgtcaggatgtggtacagtgtatgcgtagagacaccaccctggagacagccctg
aactccaaggcttacaagaggagcaagcgccagacgctgagggaggctcgcatgacagag
aaactggagaaacagcagaagatggaacaggagaggaaacgcagacagaaacaccaggag
tatctgaacagcatcctgcaacatgccaaggactttaaggactaccaccgctctatcact
gccaagatgcagaagcagaacaaggccatcaccacctggcacactaacacagagagagaa
cagaagaaagagacagagaggatcgagaaggagaggatgaggagactcatggcggaggat
gaggagggctacaggaagctgattgaccagaagaaggacaaacgtctggcgtatctgctg
cagcagactgacgagtacgtagctaacctcactgacctagtctacgaacacaaggctgca
caggcagccaacatgaagaagaagaagaagaagcagaagaagaagactattgatgagagc
ggggaagggatgagtggcatcgggcctgacggggagcccatggatgagagcagtcagatg
agtgagctgccagtcaaagtgatccagacagaaacagggaaggttctgcaggggctcgac
gcccccaagtcctcacagttggaggcctggctagagatgaaccctggatatgaagtagcc
ccaaggtcagacagtgaggagagcggttcagagtttgaggatgaggatgaagaggaggtc
ccaggagcgtccagccggccagactctcagtctgaggagaagaagatcatcgatcccaac
agtggcgagttcccagagaaagtaaccaagcacatcatcgagtctgcaaagcaggatgtt
gatgatgagtacacggtgccagagactgaactgaccatcttccagcagtcctactacggt
gtggctcacgccatcattgagagggtcgacaaacagtcttcgctgctcatcaacggcatg
ctcaaacactaccaggtgcagggtctggagtggatggtgtctctgtacaacaataatctg
aatggtatcctggctgatgagatggggctaggcaagaccatccagaccatcgccctcatt
acatacctcatggaacacaagagactcaacggaccctacctcatcatcgttccactatcg
actctgtccaactgggtctatgagctggataaatggtctccgtccgttgtgaagatttcc
tacaaggggacccctgctatgagacgaggcctggtggctcagctccgcagcgggaagttc
aatgtcctcctcaccacctacgagtacataattaaggacaaacagatcctggccaagatc
cgttggaagtacatgattgttgatgagggtcaccgtatgaagaaccaccattgtaagctg
acccaggtgttgaatacccattacgtagccccacggcgcctcctcctgacgggcacacca
ctgcagaacaagctccctgagctctgggccctgctcaacttcctgctgccgaccatcttc
aagtcatgcaacactttcgagcagtggttcaatgccccctttgccatgaccggggagagg
gtggacttgaatgaggaagagacaatcctgattatccgccgtctccacaaggtgctccgc
cccttcctgctcagacgactcaagaaggaggtggagtcccagcttccagagaaggtggag
tatgtcatcaagtgtgatatgtcggccatccagagggttctgtaccgtcacatgcagggc
agaggaatcctcctcaccgatggatcagagaaagacaagaagggtaaaggaggagcaaag
accctgatgaacaccatcatgcagctgaagaagatctgcaaccacccctacatgttccca
cacattgaggagtcctttgctgagcacttaggcttcccaaacggtgttataagcggacac
gagctgtaccgtgcatccgggaagtttgagctgctggaccggatccttcccaagctgcat
gtcaccaaccacagagttctgctgttctgtcagatgacatcactcatgaccatcatggag
gactactttgcttaccgcaatttcctgtacttgcgcctcgacggcaccaccaagtctgag
gaccgtgcggcgctgctgaagaagttcaatgagaaaggttcccagtactttgtgttccta
ctgagcaccagagccgggggactgggcctcaacctgcaggctgcggacactgtggtcatc
tttgactctgactggaaccctcaccaggacctccaagcccaggacagggctcatcgtatt
ggtcagaagaacgaggtgcgtgttttgcgtctgtgtacggtcaacagtgtggaggagaag
atcctagcggctgctaagtacaaactgaacgtggaccagaaggtcattcaagccgggatg
tttgaccagaagtcctccagccacgagaggagagcctttttacaggccatactggaaaca
gaagagcagaatgaggttggtcacggtggcgtgggaataaagattaaatgcagtgccttg
caggaggaagagaaaagtcaggtggctatggaggaagacgaggtgcctgatgatgagact
ctgaaccagatgatcgcccgtaatgaggatgagtttgagctgttcatgagtatggacctg
gaccggcggcgggaggacgccaggaaccctaaaaggaagccacgtctgatggaggaggat
gagctgccatcttggatcgtcaaggatgacgcagaggtggagcggctcacttgcgcggaa
gaggaggagaagatcttcggccgaggatcacgcaggagaggcgacgttgactacagcgac
gccctgacagagaaacagtggctcagggcagtagaggatggtaacctggaggaaatggag
gaagagatccgtctgaagaagtcgaggaagaggaggagacgaggggagaaggacggaggg
agggaagagggaggagagaaggcaaagaagaggcgtggacgtccccctgccgagaagctg
tcccccaaccccccaaaactcaccaaacagatgaacgccatcatcgacaccgtcatcaac
tacagagacaggtctaacagacagctgtcagaggtgtttgtccagctgccgtccaggaaa
gagctgccagagtactacgagctgatcagaaaacctgttgacttcaagaagatcaaggag
cgtgtgcggagccacaagttcaggagtgtgtctgacctggagaaggatgtgatgctgctc
tgtcacaacgctcagacttttaacctggaggggtcacagatctatgaggactccatcgtg
ctccagtctgtgtttaagagtgccagacagagaatcgtaaaggaggaggagagtgaagag
gacagcgatgatgacgatgatgatgatgatgatgatgatgaggaagagtcagaggcagag
tctaattcagtgagggtgaagataatgctaggtaaggacggtggcggtagcagcatcgga
gcccgtcaccataacaaggacaaaggcaagaagagactgagtcgctccaaggtcaaaccc
gtcgtcagtgacgatgacagcgacgaagatcaggatgacaacttcaggaggaaaagaatc
agtctgaggagagcagaagtgaagatgagtgaagaagaggaaggctga
DBGET
integrated database retrieval system
