KEGG   Oncorhynchus gorbuscha (pink salmon): 124036968
Entry
124036968         CDS       T07892                                 
Symbol
ddb2
Name
(RefSeq) DNA damage-binding protein 2
  KO
K10140  DNA damage-binding protein 2
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03420  Nucleotide excision repair
ogo04115  p53 signaling pathway
ogo04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124036968 (ddb2)
  09124 Replication and repair
   03420 Nucleotide excision repair
    124036968 (ddb2)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    124036968 (ddb2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ogo04121]
    124036968 (ddb2)
   03400 DNA repair and recombination proteins [BR:ogo03400]
    124036968 (ddb2)
Ubiquitin system [BR:ogo04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     124036968 (ddb2)
DNA repair and recombination proteins [BR:ogo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      124036968 (ddb2)
SSDB
Motif
Pfam: WD40_CDC20-Fz WD40_Prp19 WD40_WDHD1_1st WD40 Beta-prop_EML_2 WDR55 Beta-prop_RIG_2nd Beta-prop_IFT140_1st Beta-prop_EIPR1 WD40_RFWD3 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_Vps41 WD40_MABP1-WDR62_2nd
Other DBs
NCBI-GeneID: 124036968
NCBI-ProteinID: XP_046207537
LinkDB
Position
LG06:complement(3691685..3715348)
AA seq 503 aa
MARAKKGPSEASESKQKSRRQNGETSGAAGQTISTKLRQKKDGTNTLKTGPVFPTTMIRT
SVGKRSGPGSILHYIYQSTLGQSLHSQMRQCLQEPFVRSLSSYKLHRTASPFDRRVTCLE
WHPSHPTTLAVGSKGGDVVLWDYNVLNKTSFIQGKGAGDFIGGMTFSLTDPSKVYLASGD
GTLTEQSFQGGPGTVLSRVQDCGHDHHNVCLWYCCVDVSLSRQMLVTGDNIGRVLLLGMD
GHQVFNGKLHKAKVTHAEFNPRCDWLMATASVDHTVKLWDLRNIKDKDTYLHEMVHDKAV
NSAYFNPVDCSKLLTTDQYDQIRVYSSSDWSTPQQIIQHPHRQFQHLTPIKATWHPLYDL
MVVGRYPDERVCPGALRTIDIYDANTGELACQLLDPNAPGIISVNKFNPMGDVLGSGMGV
NILVWNREETLAGKQQRGELQQEAGVQVGRGRGQWRRRGETRRGGGTGGRGGEDEDDIGK
LKKKLSSSLGTRTRTARDTEGSK
NT seq 1512 nt   +upstreamnt  +downstreamnt
atggcacgggcaaagaagggtccttcagaagcatctgaatcgaagcagaagtcgaggagg
cagaatggagaaacgtctggggctgcaggacaaaccatctccacgaagcttcggcagaag
aaggacgggacgaacacattgaaaacagggcctgttttcccaaccaccatgatcaggact
tcagttgggaagagaagtggaccaggaagcatcctgcactacatttaccagagtacactg
gggcagagccttcattctcagatgagacagtgtctccaggagccgtttgtacgttccctg
tcctcctataagctccaccgtacagccagtccgtttgaccggcgggttacctgtctggag
tggcacccctcgcaccccaccacgctggcggtcggctccaagggaggagacgtggtcctc
tgggactacaacgtgctcaacaagaccagcttcatacaagggaaaggagccggggatttt
attggtgggatgacgtttagcctgacggacccgtccaaggtctacctggcgtctggcgac
ggtacgctgaccgagcagagctttcagggcggtccaggaacggttctgtccagagtccag
gactgtggacacgatcaccacaatgtctgtctgtggtactgctgtgtagatgtgtcgttg
agcagacagatgttggtgacaggagacaacattggacgagtcttattgctgggcatggat
ggacaccaggtcttcaacgggaagctgcacaaagcaaaagtgacccatgctgaattcaac
cctcgctgcgattggttaatggcgacagcgtccgttgaccacacggtgaagctatgggat
ctgaggaacatcaaggacaaggacacttacctccacgagatggttcatgacaaagctgtt
aactcagcctactttaatccagtggactgctccaagctcctgaccacggaccagtatgac
cagatcagggtgtactcctcttctgattggtcaactcctcagcagattatccagcaccca
cacagacagtttcagcacctcacaccaatcaaggccacgtggcaccctctgtacgacctg
atggtggttggacggtaccctgacgagagggtgtgtccaggtgccctgaggaccatcgat
atctatgatgccaacacaggagagctggcatgccaactactggaccccaacgcccctggc
atcatatctgtcaacaagttcaatccaatgggagatgttttaggatctgggatgggtgtg
aacatcctagtgtggaacagagaggagacattggctggtaagcagcagagaggagagcta
caacaggaagcaggagtccaggttggcagaggtcgaggccagtggaggagaagaggggag
actcggagggggggagggacggggggacgggggggagaggatgaggacgacattgggaag
ctgaagaagaagctgtcttcgtccttgggtaccagaaccagaacagccagggacacagaa
gggtccaaataa

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