Oncorhynchus gorbuscha (pink salmon): 124037029
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Entry
124037029 CDS
T07892
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124037029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124037029
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124037029
mRNA degradation factors
5'-3' decay
Decapping complex
124037029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
Pdc1_Ge1
WDR55
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
124037029
NCBI-ProteinID:
XP_046207609
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All DBs
Position
LG01:complement(37803379..37833989)
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AA seq
1424 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNNVDASPSENQSRTSFNGELNGLLGADLIGAGDR
STMAESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKILDQVIVHVRRPEDTPLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNGTWPVDATDLKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGKPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRL
CHTEVLPPDEESESMTADGNQGTMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLF
LPHSNSNNGFGFSDHLTDMSVEGLSSDKESGCGSENDLCKIPALADFLSPSGTAAMPKLM
TPDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSGASDGNVCRGGEELTQSPKISVESN
SILIAGLGDNMPMYHLPQETTPHTLMFPLTYPFRPLQGLPSPNPPLSLDPQVIEPMLIQQ
ASPTRARSPDVISSASTAMSQDIPEIASETLQRGLGGMSGAESRETLPALHTDSMASAAS
ALHLLSPRNRNSSDHGHLPLELGAVVGAVEAEQRLSNTPSLLENALSQENAAAAASCSDN
NVSHPWPAAPDITRETRNSLRDNGLGDCSREEIKDRHMSSPYHRRTYHLTQNDSQDASAE
QSDHDDEVASLESSSGNCGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQ
PEQHHQQMNPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVEHVM
VSQQEHEQRRMERILAEGHTRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTVPPT
ITKSLEPVTAQMSNTIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAY
KDAFQGIVLPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMIGQL
QQMIDTFQNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAMKEQ
QAAVNSSIMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVL
YVCETIDSQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVT
RDHMSAVLSQVRQKLFQFLQSDPHSPLSKRARRLVMMLQGLVNH
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggaccgacccggaaacaatgttgatgcttctccaagtgagaaccaaagcagaaca
tctttcaatggtgaattgaatggacttctgggagcagaccttataggagcaggcgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacacccaagagtgtcag
atcatctgcctctctggggatgatggctccacttgcattcccatcacatctaacaatgtt
gaaattgtggccagtcgagactcgagcattgacagcaaggcacgtggcagcaacaaggta
aaaatccagcctgtcgccaagtacgactgggagcacaagtattactacggcaacctcatt
gcggtctctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcaccctgctgaagggcttcactggtgcagtc
acagacctggccttcgcacacctggactccaccctgctgggatgtgttgacgaggctggt
aacctggtcatctggcagctcacctgccatagcagcaagatcctcgatcaagtcattgtc
cacgtccggaggcctgaggacacacctctgaactccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccccgaggatgccagccagaccctggccctactg
catgaagacagagctgaagtgtgggatctggagatcctccgcagcaacaatggcacctgg
ccagtagatgccactgacctgaaggatggagttataaccataaaaggacatacagatcgc
atcagtgaaggtgccctgtctccggatggcacagttttggccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctacacgagtggcagccccacaacgggaagcccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccattctggcgctttctgatt
actggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctctccagacccgttcaactcctcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagag
tttctgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctg
tgccacacggaggtcctcccgccagacgaggagagcgagagtatgactgcagatggcaac
cagggcacaatggaatccaaagctgggatccaaatcaagctatattgtgttcacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggctctggctcatccttgttc
ctgcctcactcgaactcaaataatggctttggtttttcagatcacttgacagacatgagt
gtggaaggtttgagctctgataaggagtctggatgcggctccgaaaatgatctctgcaag
attcccgctcttgctgacttcctgtccccctccggcactgctgctatgcccaagctcatg
acccctgacgccttcatgacccccagtgcttcggtcccagcctccccaggcagcagtgcc
agcagcctgaccatagtgacagccatgagcagcaactctgacagtggcgccagtgatggt
aatgtctgcaggggaggagaggagctgacccagagccctaagatatctgtggagagcaac
tccatcctcatcgcaggcttaggggacaacatgccgatgtaccatcttccacaagagacc
actcctcatacgctcatgttccccctcacctaccccttccgccctctacaggggcttccc
tctccaaacccgcccctctcgctggacccgcaggtcattgagcctatgctgattcagcag
gcctctcctacccgggcccgctctccggacgtcatctcgtctgcctccacggccatgtct
caggacatacctgagatcgcctctgagacactgcagcgaggcctgggggggatgtctgga
gctgaatctcgagaaactctcccagccctccacacagacagcatggcttctgcagcctca
gctcttcacctcctctctccacgaaaccggaacagctctgaccatggccatctgcccctg
gagctgggtgctgtagtaggagcagtggaggcggaacagaggctgagtaacaccccctca
ctactggagaacgccctgtcacaggagaatgctgctgccgctgcctcctgctcagacaac
aatgtgagccacccgtggcctgcagctcctgacatcacacgggaaacacgcaacagcctg
cgagacaatggcctgggagactgttcgagggaggaaattaaggacagacacatgtcctct
ccataccacagacgcacctaccacttaacccagaatgacagtcaggacgccagtgcagaa
cagagtgaccatgacgatgaggtggccagtctagagtcgtcttcagggaactgtggagcc
aggtcgtctcaaagactgccagtgaaggagtggaagagttctcccagaggctcccctaaa
cttaagaggaagagtaaaaaagatgacggggatgcatctcatgcctctcaatccaggcag
cctgagcagcatcatcaacagatgaacccagaggtgctggaagaactcctcattttgctc
cgtaaccagcagagggagatagcggagctccatcagagtcagctggagctgcttcagaga
gtgacgggccacatggacgccgtgcagagctctgtcatagcccacgtagagcacgtcatg
gtcagccagcaggagcacgaacagaggaggatggagagaatcctagcagagggacacacc
cgtaaccagcagctccaggagcatctctcgcagcagctaggtcaaactctcagtaacacc
ctttgtaatcggctggacaagactctccgagaggagatgaagaagactgttcctcccact
atcaccaagagcctggagcctgtcactgcccaaatgagtaacaccattgctgctaagctg
actgctgtggaggcagcactgaaggagaacgttagcaaagtcgtgaagtcaaagaacacc
acagatgctattggccgagcagctgccgaggcaatgcaggggcctatccaggctgcctac
aaggatgctttccagggcattgtgctgcctgtgtttgagagaggctgccagtctatgttc
cagcagatcaatgagagcttcaagcagggcacccatgagtatatccagcaactggagacc
catgtgaagaacaagaagcagcatgagcaggaagcacgggatcctatgattggccagctg
caacagatgattgacacgttccagaactcaacggatcagctggccaccaccatcacagca
agtgtccgctctgaggtccagcatcagctccacatgacggtgggaaatttgcaggactcg
atcctgacccaggtgcagcgcattgtgaagggtgaggtgagtatggccatgaaggagcag
caggcagctgtgaactccagcatcatgcaggccatgcgctctgctgcaggcacgcctgtc
cccaccgcacacctagactaccaggcccagcaagccagcatcctgcagctgctgcagcag
ggacagctcaaccaggccttccaacaggccctgtcagcctctgacctgaacctggttctg
tatgtgtgcgagaccatcgactcccagcaggtgtttggccagcatccctgccccctcatc
cagccagtgctgctgtccctaatacagcagctgtccactaacctggccacacgctctgag
ctcaagatcagttacttggaggatgctgtgatgaacctggaccatggtgatccggtgacg
agggaccacatgagtgcggtgctgtcccaggtccgacagaagctgttccagttcctgcag
tcagacccacacagtcctctcagcaagagagcccggcgcctggtgatgatgcttcagggc
ctggtcaatcactag
DBGET
integrated database retrieval system
