Oncorhynchus gorbuscha (pink salmon): 124037851
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Entry
124037851 CDS
T07892
Symbol
fip1l1a
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124037851 (fip1l1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124037851 (fip1l1a)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124037851 (fip1l1a)
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GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
124037851
NCBI-ProteinID:
XP_046208959
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Position
LG06:32654450..32692841
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AA seq
561 aa
AA seq
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MSAEMDKTTDASGGDEEEWLYGDESEEKAEEEAPNSAKAQPTAEEVHENGVVKQDTGQED
EESDSDSEDDDDVCVTIGDIKTGGSSQPFNAFGSTPVNLNIKAAGRTHASVGPKAKGVDL
DALGSVNGIPVLEVDIESFEEKPWRKPGSDLSDYFNYGFNEDTWKTYCEKQRRLRMGYEG
MNHASATKIMVHQGRSAHGDRDGALSCFRSDYSSPSNHYNSGSSSRKQSGTIDVIGGQTG
TISRVEGRRRHNIEGNNIQVLSEPPSDAEPTPTKMPPFFPPNIPPPPFPPPPHNVSSAPP
LIPPPRIPINVPPPGYPPGAPPPSLIPTLDRLHYRGSRIRRDGRRQAGDNDINGDRAGEG
REHSYCPTRQTGARRTRSGRSGGYDGRSAPPYPPFPPGVYPPPPPGSAAASWAGVFDSAK
AWEYYAQRDNERERHKERDRTRERGHEKEREREREHNPSSQVVNSEEDRHRHRDYGERGY
DRHHHERSSREKEERHREKRHRDKEEGRHKSSSSSSRRRHESEEGDSHRRHKHKKVKRSR
EDKEPSQELSADQENQSEPTE
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtccgcagaaatggacaaaacaactgatgcaagcgggggcgatgaagaagaatggtta
tatggagatgagagtgaggagaaggcagaggaagaggcacctaatagtgcaaaggcccag
ccgactgctgaagaggtccatgagaatggagtagtgaagcaggatacaggccaggaagat
gaagaaagtgacagtgacagtgaggatgatgatgacgtgtgtgtaaccattggcgatata
aagaccggaggctcgtctcagcctttcaatgcttttggatccacaccagttaatctcaac
attaaggctgcagggagaacacatgcgtcagttggccccaaagccaaaggagtggacctg
gatgcactgggcagtgttaacggaatccctgtgttggaggtcgacattgagtcttttgaa
gaaaagccgtggagaaagcctggttcggacctctcagactactttaactatggctttaac
gaggacacctggaagacctactgtgagaaacagaggagactacgcatggggtatgagggc
atgaaccatgcttcagccactaaaatcatggtccaccagggacgttcagcccatggcgat
agggatggggccctttcctgctttaggtctgactattcctcccccagcaaccactacaat
tcaggctcctccagtagaaagcagagcggcaccattgatgttattgggggacaaactggt
accatcagccgggtagagggacgaagacgtcacaatatagaaggaaataacatccaggtg
ctttctgagcccccctctgacgctgagcctactcccactaagatgccccccttttttcct
cccaacatccccccgcctcctttcccgcctccaccccacaatgtcagctccgcccctcca
ctcattcctccaccacggatccccatcaatgttcctccacctggctaccctcctggcgca
ccacctccttctctgattcccaccttagacaggctgcactacaggggaagtaggatcagg
agagacggaaggagacaggctggagacaatgacataaatggagacagagcaggagaaggg
cgagaacacagctactgcccaaccagacagactggagccaggagaacacgcagtggacgc
tctggaggctatgatggtcgctcagctccaccgtacccccccttccctccaggtgtgtac
cctcctcctcccccgggtagcgcagcagcctcctgggccggggtattcgacagtgccaag
gcctgggagtactacgcgcagcgggacaacgagcgagagcgccacaaggaaagagaccga
accagagaacgtggacacgagaaagaaagagaaagggagagagagcacaacccttcctcc
caggtcgtcaacagtgaggaggatcggcaccggcacagggactatggagagagaggatat
gaccgccaccaccacgagagatccagcagggagaaagaagagagacaccgagagaagaga
cacagagacaaagaggaggggagacacaagtcctcaagcagtagcagcaggaggagacat
gagagtgaggaaggggacagtcatcgaagacacaaacacaagaaggtcaagaggagcaga
gaggacaaggagcccagccaggaactctctgctgaccaggagaaccaatcagagcccaca
gagtga
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