Oncorhynchus gorbuscha (pink salmon): 124038240
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Entry
124038240 CDS
T07892
Name
(RefSeq) low-density lipoprotein receptor-related protein 5-like
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04150
mTOR signaling pathway
ogo04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
124038240
04150 mTOR signaling pathway
124038240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124038240
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
124038240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
DUF5050
Vgb_lyase
SGL
EGF_LRP2
EGF
cEGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
124038240
NCBI-ProteinID:
XP_046209810
LinkDB
All DBs
Position
LG01:44063808..44120593
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AA seq
1624 aa
AA seq
DB search
MELKPRPLAMDVLLVELLFYSSLLSLVRGSPLLLFANRRDVRLVEVGRPESAVVVSDLED
AAAVDFLYSEGLIFWTDVSEEAIKQTYYNQSTHSVKEAMGTGQTVVVSGLDSPDGLACDW
LGRKLYWTDSETNRIEVANLDGTSRKVLFWLDLDQPRAIALNPAHRYMYWTDWGEEPRIE
RAGMDGSNRKIIVEVDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGSSRETVVEGTL
THPFALTLSEETLYWTDWQTRSIHACNKHTGDKRREILSGIYSPMDIQVLGPDRQPDIQT
PCSVDNGGCSHLCLLSPMQPFYSCACPTGVKLKEDGKTCRPGAEQVLLLARRTDLRRISL
DLPDFTDIVLQVDDIRHAIAIDYDPVDGYVYWTDDEVKAIRRSRIDGTEAQTLVTTEINH
PDGIAVDWVARNLYWTDTGTDRIEVTRLNGTSRRILISENLDEPRAIVLDPVNGYMYWTD
WGEKPKIERANLDGTERIVLLNTSLGWPNGLAIDYEAGKLYWGDAKTDKIEVIDVDGSNR
VTLLEDKLPHIFGFTLLGDYIYWTDWQRRSIERVHKTNAIREIIIDQLPDLMGLKATRVT
ETSGTNGCAEDNGGCSHLCFHRPQGLRCACPMGLELLSDMRMCVVPEAFLLFTNRADIRS
ISLGTNSNDVAIPLTGVKEASALDFDVSENRIYWTDVSTKTISRAFMNGSSVEHVIEFGL
DYPEGMAVDWMGRNVYWADTGTNRIEVARLDGQYRQVLVCKDLDNPRSLALDPANGYMYW
TEWGGKPRIARAHMDGSNIVTLVDKVGRANGLTIDYIDQRLYWTDLDTCMIESTNMQGLQ
REIVADDLLHPFGLTQYRDYIYWTDWKLRSIERADKRSGLNRTMVQGHLEYVMDILVFHS
SRQDGANDCSQNNGNCAHLCLASPAGAQCRCASHYTLDSNSRNCSSPSSFLLFSQKASIS
RMVLGEQSPDIILPIHVLRTVRAISYDPLDHLVYWVDGRQNIRRARDDGTQSSVVVSTTS
THQQQPDKQPHDLSLDPYSRTVYWTCEATNTINLQRLDGDAVGVVLRDEHDKPRAIVVNA
EKGYMYFTTMQDRSAKIEGASLDGTERESLFTTGLIRPVALALDNKLGKLFWVDADLKRI
ESSDLTGANRIVLQDSNILQPMGLTVLGEHLYWIDRQQQMIERVDKLTGEKRTRIQGRIS
YLTSIHAVEDMDPAEFASHPCSRDNGGCSHICIAKGDGTPRCSCPMHLVLLPNLLVCGEP
PTCSTEQFTCATGDIDCIPMAWRCDGFAECDDNSDEERCPVCSAFQFQCDKGQCVDAQLR
CNGEADCTDNSDEQDCDTICLPNQFRCNNNQCILKKQQCDSYSDCADNSDELFCEFLTPS
SNDIHSSHTSTIGPVIGIILSVFVMGGMYFLCQRVVCRRYKGPNGAFPHEYISGTPHVPL
NFIAPSSSQNGTFTGKEGISCGKSIMSSVSLMGSSSSGTPLYDRNHVTGASSSSSSSAKG
AFYPQMLNPPPSPATDRSLYNADVFYSSNSPSTTRSYRPYLMRGVAPPTTPCSTDVCDSD
YTTSRWKSNKYYMDLNSDSDPYPPPPTPRSQYLSAEESCPPSPSTERSYFHLCPPPPSPC
TDSS
NT seq
4875 nt
NT seq
+upstream
nt +downstream
nt
atggaattaaagccacgaccactagcaatggacgttctccttgtggaattactgttttat
agcagcttgctctctctggttcgtggatctcccttgctgctgtttgccaaccggcgggat
gtgaggctggtggaggtggggaggccggagtcggcggtggtggtcagtgatctggaggat
gctgctgccgtggacttcctctactctgaaggactcatcttctggaccgacgtcagcgag
gaagccatcaagcaaacctactataatcagtccacccactctgtgaaagaggccatgggg
acagggcagactgttgtcgtgtcgggcctcgactcccccgacggactggcttgtgattgg
ttgggccgtaaactatactggactgactcggagaccaaccgcattgaagtggccaatctg
gatggcacctctcggaaagtgctcttctggttagacctggaccagccccgggccatcgcc
ctgaacccagcccaccgctatatgtactggacagactggggggaggagcctcgcatcgag
agggcggggatggacggcagcaacaggaagatcatcgtggaggtggacatctattggccg
aacggtctcaccattgacctggacgaacagaaactgtactgggccgacgctaagctgagc
ttcatccacagagctaacttggatggctcctcacgggagactgtggtggagggcaccctc
acccacccatttgccctcaccctgtcagaggagactctgtactggacagactggcagacc
cgctccatccacgcctgcaacaaacacactggagacaagaggagggagatcctcagtgga
atctactcccccatggacatccaagtgctgggtccagatagacagccagacatccaaact
ccctgcagtgtggacaacggaggctgctcccacctgtgcctgctgtcccccatgcagcct
ttctacagctgtgcctgccccactggagttaagctcaaggaggatgggaagacctgccgc
ccaggtgcagagcaggttctgctgctggcccggaggactgacttgaggaggatctctctg
gacctcccagacttcaccgacatcgtccttcaggtggatgacatccgccatgccatcgcc
attgactacgaccctgtggatggatacgtgtactggactgatgatgaggtcaaagccatc
cgccgctcccgtatcgacggcactgaggcccagaccctggtcaccacggagatcaaccac
ccagatggcatcgcggtggactgggtggcccggaacctgtactggacagatactggcact
gaccgtattgaggttaccaggttgaacggaacctcccggcgtattctgatctcagagaac
ttggatgaaccaagggccattgtgctggaccctgtcaatggttacatgtactggacagac
tggggggagaagcccaagatagagcgagctaacctggatggaactgagcgtatcgtgctg
ctcaatacctcgctgggttggccaaacggtttagccatcgactatgaagcaggaaagctg
tactggggcgatgccaagacggacaaaattgaggtgattgacgtggacggctccaacagg
gtgaccctgctggaggacaagcttccccacatctttggcttcacgctgctgggcgactac
atctactggacggactggcagagacggagcatcgagagggtccacaagaccaacgctatc
cgagagatcatcatcgatcagctgcctgaccttatgggtctcaaggccaccagagtcaca
gagacctccggcacgaacggctgtgcggaagacaacggcggctgcagccacctgtgtttc
caccggccccagggcctgcgctgtgcctgtcccatgggcctggagctgctcagtgacatg
aggatgtgtgtggtgcccgaggctttcctgctcttcaccaaccgggctgacatccgctcc
atctctctcggcacaaactctaacgacgtggccatccccctcaccggggtcaaggaggcc
tccgcccttgactttgacgtctccgagaacaggatctactggactgacgttagcaccaag
accatcagcagggccttcatgaacggcagctctgtggagcatgtgatagagtttggcctg
gactacccagagggcatggcagtggactggatgggcaggaacgtgtactgggccgacacc
gggaccaaccgcatcgaggtggcccggctggacggacagtaccggcaggtcctggtgtgt
aaggacctggacaaccctcgctccctggccctcgaccccgccaacggttacatgtactgg
actgagtggggaggcaagcccaggatcgccagggcccacatggacggcagcaacatagtg
accctagtggacaaagtgggcagagcaaatggcctcaccatcgactacattgaccagaga
ctgtactggaccgacctggacacctgcatgatagagtcaaccaacatgcaaggtctgcag
agggagatagtggctgacgacctcctccacccgtttggtctgacccagtaccgggattat
atctactggacagactggaaactgcgcagcatcgagcgggccgacaagcgcagcggcctc
aaccgcaccatggtccagggacaccttgagtacgtcatggacatcctggtcttccactcc
tcccgccaggatggtgccaacgactgctcccagaacaacggcaactgtgcccacctgtgc
ctggcgtcgcccgccggcgcccagtgccgctgtgcctcccactacactctggattccaac
agcaggaactgcagctccccctccagcttcctcctgttcagccagaaggcctccatcagc
cgcatggttctgggggagcagagccccgacatcatcctgcccatccacgtcctccgcacc
gtccgggccatcagctatgaccccctggaccacctggtctactgggtggacggacggcag
aacatcaggagggcccgcgatgacggcacacagtcatcagtggtggtgtccaccacttcc
acccaccagcagcagcctgacaaacagccccacgacctgagcctggacccctacagccgt
actgtctactggacttgtgaggccaccaacaccatcaacctccagcgcctagacggagat
gctgtgggcgtggtgctgagggacgaacacgacaaacccagagccatcgttgtcaatgca
gagaaagggtacatgtatttcaccaccatgcaggatcgctctgctaagatcgagggagcg
tctctggacgggacggagcgggagtctctgttcaccacaggtctgatccggcctgtagcc
ctggccctggacaacaagctggggaaactcttctgggtggacgctgacctgaaacgcatc
gagagcagtgacctcactggagccaatcggatcgtcctccaggactctaacatcctgcag
cccatgggtctgacggtgctgggagagcacctgtactggatcgacagacagcagcagatg
atcgagcgtgtggacaagctcacgggggagaagaggacccgcatccagggtcgcatctcc
tacctcaccagcatccacgctgtggaagacatggaccctgccgagtttgcttctcatccc
tgttcccgtgacaacggaggctgctcacacatctgcatcgccaaaggagatgggacacct
cgctgctcctgtcccatgcacctggtcctgctgcccaacctgctcgtctgtggagagccg
cccacctgttccacagagcagttcacctgtgccacaggcgacatcgactgcatccccatg
gcgtggcgctgtgacggcttcgccgagtgtgatgataacagtgacgaggagaggtgccca
gtgtgctcggccttccagttccagtgtgacaagggccagtgtgtggatgctcagctacgc
tgtaacggagaggcagactgcacagacaactccgatgaacaggactgtgacactatctgc
ctgcccaaccagttccgctgtaacaacaaccagtgcatcctgaagaaacagcagtgtgac
tcctacagcgactgtgctgacaactctgacgagctcttctgtgaattcctcaccccctcg
tcaaacgacattcactcatctcacaccagcaccataggccctgtgattggcatcatcctg
tcagtgtttgtgatgggagggatgtactttttgtgccagcgggttgtgtgccgccgttac
aaaggtcccaacggagcctttccccacgagtacatcagtggcactccccacgtacccctc
aacttcatcgcccctagcagctcacagaacggaaccttcaccggtaaagaaggtatctcg
tgtgggaagtctatcatgagttctgtcagtctgatggggagcagcagtagtggaactccg
ctctacgacaggaaccatgtgacaggggcctcctccagcagctcatccagcgccaaggga
gccttctatccacagatgctcaaccctcctccctctccagccacggatcgttccctgtat
aacgcagacgtcttctactcctctaacagtccctccaccaccaggtcttacaggccttat
cttatgcgaggcgtggcaccccccaccaccccctgcagcactgatgtctgtgacagcgac
tacaccacaagtcgctggaagagcaacaagtactacatggaccttaactcagactctgac
ccctaccctcctccccccaccccccggagccagtacctatcagcagaggagagctgcccc
ccttctccatccacagagcgcagttactttcacctctgtcctcctcccccctcaccctgc
actgactcttcatga
DBGET
integrated database retrieval system
