Oncorhynchus gorbuscha (pink salmon): 124040197
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Entry
124040197 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: mismatch repair endonuclease PMS2-like
KO
K10858
DNA mismatch repair protein PMS2
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03430
Mismatch repair
ogo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124040197
03460 Fanconi anemia pathway
124040197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124040197
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
124040197
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
124040197
NCBI-ProteinID:
XP_046213092
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Position
LG07:complement(62875023..62886567)
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AA seq
882 aa
AA seq
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MTDASSEPAGIIKAIDRHSVHQICSGQVVLTLATAVKELVENSIDAGATNVDIKLKDSGT
ELVEVSDNGKGVEEANFEGLTLKHHTSKLKDFSDLIHVETFGFRGEALSSLCALSDLSVV
TCHEDAQVGTKLVFDHNGHLTQQSPHPRQQGTTVSLSQLFYTLPVRHKEFQRNIKKEYTK
MIHILQSYCIVSTGVRITCTNQTGQGKRTPVLCTSGRQSMRDNIGAIFGPKQLQSLLLFQ
QLSPTDNIKEDYGLSNADLPKDLFAISGFVSRGDHGVGRSATDRQFFYINKRPCDPSKVS
KVVNEVYHTFNRHQYPFVALNITVASECVDVNVTPDKRQIFLQEEKLLLAIMKSSLIAMY
ETGVNKISLNHMSFSTTSKHTLQDSYRPAEPPSDMEGCQVPSSETAPEAGDDSESVIPSP
QSSLNLAGLKAAFSVHNSPGSRSKLSTAKAANTGPTQKKLQSFFGGSDKSQNTHGPSLQS
PLKISRGAVKCSPVGRSVLEGFRYGMTPDSDIDSGRESVLSEHSSPTATPESLCATTGSD
FNSPDNIVDDEPIIKSEALNEPFNEEHTVAKHFDRPIEPRISEMSEEMSFSPNAKKVKLE
DGQFSLEYKTTHSAGSEGSSGSNVDAPVCVQKRTVPLQFSVQELFGRVRRLQEQRREKAE
DRLRYRRFRAKISPGENQSAEDELKKEICKDSFKDMEIIGQFNLGFIITKLNSDIFMIDQ
HATDEKYNFEMLQQHTALQGQRLIVPQNLHLTAVSENVLMENLEIFRKNGFDFLIDEEAQ
VMERVKLVSLPTSKNWTFGPGDIEELIFMLSDSPGVMCRPSRVRQMFASRACRKSVMIGT
ALSTSEMKKLVVHXGEIEQPWNCPHGRPTMRHLANLNIISED
NT seq
2649 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgcaagctctgaaccagctggaatcatcaaggccattgacaggcactctgtt
catcagatctgctctggacaagttgtgttgaccctggctacagctgtcaaggaactggtt
gaaaacagtattgatgcaggggccaccaatgttgacattaaattgaaggacagtggaaca
gagcttgtagaagtgtctgacaacggcaaaggagtggaagaggctaattttgaaggacta
accttgaagcaccacacatcgaagctgaaggatttctctgaccttatccacgtggaaaca
tttggcttccgaggggaagccctcagctctctttgtgccctcagtgacctcagtgttgtg
acctgtcatgaggatgcacaggtgggcaccaagctggtgtttgaccacaacggtcacctg
acccaacagtcgccccaccccaggcagcagggcaccacggtcagcctgtcgcagctcttc
tacaccctgcccgtcagacacaaggagttccaacgcaacatcaaaaaggaatacaccaag
atgattcacatcctccagtcctactgcatcgtctcaacaggggttcgtatcacctgcacc
aaccagacgggacagggcaaacgcaccccggtcctctgcaccagcggcaggcagagcatg
agagacaacattggagccatatttggccccaaacagttgcagagtctgcttctattccag
cagctctcgccaacagacaacatcaaggaggattatggactgagtaatgcagacctaccc
aaagacctcttcgcaatctctggttttgtgtcgcgaggggatcatggtgtcgggagaagt
gccacagacagacagttcttttacatcaacaaacgcccgtgtgatccttctaaggtctcc
aaggttgtgaatgaagtgtatcacacctttaacagacatcagtatccgtttgttgcattg
aacatcactgttgcctcagagtgtgtggatgtgaacgtcactccagacaagcgtcagatc
ttcctccaggaggagaaactcctgctagccatcatgaagagctctctcatcgccatgtac
gagactggagtcaacaagatcagcctcaaccacatgtccttctccaccaccagtaaacac
actttacaagattcctacagaccagcagagcctccatctgatatggaaggatgccaggtt
ccatcatctgaaacggctcctgaagctggagatgattcagaatctgttataccaagcccc
cagtcttctctcaacttggctggattgaaggctgctttctccgtgcacaacagcccaggc
agtaggtccaagttgagcactgctaaagctgctaacactggtccaacccagaagaaactg
cagtctttcttcggaggctctgacaagagtcagaacacacatgggccaagtttacaatct
cctttgaaaatcagtcgaggtgcagtgaaatgttcccctgtggggaggtctgtgctggag
gggttcaggtatggaatgacgccggacagcgacatagactctggcagagagagcgtcctg
tcggagcacagctcccccacagccaccccagagagtctctgtgctactacagggtcagac
ttcaactcaccagacaacatagtagatgacgagcccattataaaaagcgaggcactcaat
gaacctttcaacgaggaacacacagttgctaagcacttcgaccggccgattgaaccacgt
atttcagagatgtctgaggaaatgagcttcagtcccaacgccaagaaggtcaaactagag
gatggtcagttctccttagagtacaagaccacacattcagccggttctgaaggatcctct
gggtctaatgtggacgcaccagtctgtgtacagaagaggacagtgccactgcagttctct
gtacaggagctgtttgggagggtgagaaggcttcaggaacagcgtagagagaaggctgaa
gacaggctgcgctacagacgcttcagagccaaaatcagccctggagagaatcagagtgct
gaggatgagctgaagaaagagatatgcaaagacagttttaaggacatggagataatcggc
cagtttaacctgggcttcatcataactaagctcaactctgacatcttcatgatagaccag
cacgccaccgacgagaagtacaactttgagatgcttcaacaacacactgcactacaagga
cagagactcattgttccacagaatctccacctcacagcagtcagcgagaacgttctcatg
gagaaccttgagatcttcagaaagaatggctttgatttcctcatagatgaggaggcccag
gtgatggagcgagtgaagctggtgtccctgccaaccagtaagaactggacatttggtccg
ggggacatcgaggagctcatctttatgttgagtgacagcccaggggtcatgtgtcggccg
tctcgtgtcaggcagatgttcgcctccagggcctgcaggaagtcggtgatgatcgggact
gctctgagcaccagtgaaatgaagaagcttgtggttcatnatggggagatagagcagcct
tggaactgtccacatggcagacccactatgagacaccttgcaaacttgaatatcatctca
gaagactga
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