KEGG   Oncorhynchus gorbuscha (pink salmon): 124040246
Entry
124040246         CDS       T07892                                 
Symbol
hltf
Name
(RefSeq) helicase-like transcription factor isoform X1
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ogo04121]
    124040246 (hltf)
   03400 DNA repair and recombination proteins [BR:ogo03400]
    124040246 (hltf)
Enzymes [BR:ogo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124040246 (hltf)
Ubiquitin system [BR:ogo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124040246 (hltf)
DNA repair and recombination proteins [BR:ogo03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    124040246 (hltf)
SSDB
Motif
Pfam: SNF2-rel_dom HIRAN Helicase_C zf-C3HC4_3 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-RING_5 zf-C3HC4_4 zf-ANAPC11 DEAD RING_XB3-XBAT31 ResIII zf-rbx1 zf-Nse Prok-RING_4 zf-RING_6 WBS_methylT zf-RING_4
Other DBs
NCBI-GeneID: 124040246
NCBI-ProteinID: XP_046213198
LinkDB
Position
LG07:complement(66645440..66657180)
AA seq 974 aa
MQSRRWFGGSGFSFADDPVTETLSQAIRGTGEELDREPDTGVLFGSLRGSVVGLRYYTGV
VNKGEMVSLVRQPQNPYDRNAVMVANVYGSQVGHIKRELAVLLANIMDNNLARVEGVVPF
GVTNQFTMSVVLSFWGREENRDAVVRQITSHSFKLQSGPTGFMCADGSRDLPRKSVLLTP
EELKNAFDNLFENLMEDKIGEREAVEAVCTPLLPHQKQALSWMCVCENNAALPHFWEVKG
ELFYNTLTHSSVRERPQRVRGGILADDMGLGKTLTTIALILSNFHHGKPLCEPEKSSPEP
KASTTARKNPEGKSGDGDQAEVSVAPAGHFPCMRANQAETQVVCVESVEVVQEDVVEDGD
KDWVSEKKAKRRPQGGKAKATTTKKAAKTKGKAVSTSRKGGAVLEDLDFAAALSGLTQGA
PQKKSVCKSVVSPAEAASSQSTDDPAARATLIICPLSVLSNWLDQLDQHVRADVKLNVYL
YYGSERNRDTHFLSSQHMVLTTYNVLSADYSGSASPLHTVSWLRVVLDEGHIIRNPNTKQ
SKAVLKLNTQRRWILTGTPIQNNLRDLWMLVAFLRLKPFDVREWWNRVIQRPVTQGEKTG
LQNLQALVKCVTLRRTKTSRVCGRPLVSLPERSVRIEEVELTQKEREEYELARTEGRTTI
SRYVAEGTVLRNYADVLAILVRLRQFCCHPGLLGKTTTHTGVVAVTPAELRERLIMKLRL
VLGTGSDEECAVCLDSVRLPVITHCAHVYCRPCIAEVIRSEQEQARCPLCRGQIKASELV
EFPLEEEEESNLLENWRSSSKVEALMSSLLRLRSEDDSIRSLVVSQFTRFLTILEIPLRE
EGFKFVRLDGTMSQKRRAQVIQEFQSDAPGSPLIMLLSLKAGGVGINLSAASRVFLMDPA
WNPAAEDQCVDRCHRLGQKRDVVITKFIVKGSVEENMVKIQRQKQDLVEKAFGTKNPIER
KTSRVDEIRALMEL
NT seq 2925 nt   +upstreamnt  +downstreamnt
atgcagtccaggcgatggtttggtgggtctgggtttagctttgcagatgacccggtcaca
gagacgttgtcccaggccatccgaggcacaggagaagagctggaccgagagccagacact
ggggtgctgtttggcagcctacgtgggagcgtggtaggcctccggtattatactggcgtg
gtgaacaaaggggagatggtgtctctggtgcgtcagcctcagaacccctacgaccgtaat
gcggtgatggtggctaacgtctatggcagtcaggtggggcacatcaaacgagagctagcc
gtgttgttggctaacataatggacaacaacttggccagggtggaaggggtggtgccgttc
ggggtgacaaaccagttcaccatgtctgtagttctgtccttctgggggcgagaggagaac
agagatgcagtggtgaggcagataacttcccacagcttcaaactgcagagtgggcctaca
ggattcatgtgtgcagatggttctagagatctgcccaggaagagtgtcctactgactcca
gaagagttgaagaatgcatttgacaatttatttgaaaacctgatggaggataagattgga
gagagagaggcagtggaggcagtgtgtactccgctgctgccccaccagaagcaggctctg
agctggatgtgtgtgtgtgaaaacaatgctgcgctgccccacttctgggaggttaagggg
gaactgttctataacacactcacacactcctctgttagagagagaccgcagagggtccgg
ggcggcatactggctgacgacatgggactggggaaaacgttgaccaccatcgctctgatc
ctgtccaacttccaccacgggaaacctctgtgtgaaccggagaagtcttcccctgaacct
aaggcctctaccaccgcaaggaaaaaccctgaagggaagagtggcgacggggatcaggca
gaagtgtctgtggctcccgctggtcacttcccttgtatgagagccaatcaggctgaaacc
caggtggtgtgtgtggagtcagtggaggtggtgcaagaggatgtagtggaggatggagac
aaggactgggtgtctgaaaagaaagcgaagcgaaggccacagggaggcaaagccaaggcc
accacaacaaagaaagctgctaagaccaaagggaaagcagtcagcacctcaagaaaaggg
ggtgctgtgttggaggatctggattttgcagcagcactgagtgggttaacacagggagct
cctcagaaaaagagtgtctgtaaaagtgtagtttcgccggcggaagctgcctcttcccag
agcacagacgacccagcagccagagccactctcatcatctgccccttatcggtactcagc
aactggctggaccagttggatcaacatgtgcgagcggacgtcaagctgaatgtgtatctg
tactatggctcggaacgcaacagggacacacacttcctgtcctcgcagcacatggtcctc
accacctacaacgtgctttctgctgactactcgggcagtgctagtcccctccatacagtg
agctggttgagagtggtcttggacgagggccatattatcagaaacccaaacactaagcag
agcaaggctgtactcaaattaaacacacagagacgctggatactcacaggcactcccatc
cagaacaacctgagagatctgtggatgctggtggcttttctgcgtcttaagccgttcgac
gtgagagagtggtggaacagagtcatacagagacctgtcacacagggggaaaagaccggc
ctgcagaatctgcaggctctggtgaagtgtgtcacgctgcgtcgtacgaagaccagccgt
gtgtgtggtcggcctctggtctctctgccagagaggagtgtcagaatagaggaagtggag
ctgacacagaaggagagggaggaatacgagctggcacgcacagagggacgcaccaccatc
agcaggtacgttgcagaggggactgtcctcaggaactacgcagatgttctggctatccta
gtcaggctgagacagttctgctgccaccctggcctactgggaaagacgactacacacaca
ggtgtggtagctgtgactcctgcagagttgagagagcgtctgataatgaaactgaggctg
gtgctgggcactggctctgatgaagagtgtgctgtatgtctggactctgttcgtctgccc
gtcatcacacactgtgcacacgtctactgcagaccatgcatcgcagaggtcatacgcagt
gagcaggagcaggcgcggtgccctctgtgcagaggccagatcaaggccagtgaactagtg
gagttccctttggaggaggaggaggagagtaacctcttggagaactggaggagcagctcc
aaggtggaggctctaatgtctagcctgctcagactgcgcagtgaggacgacagcatcagg
agtcttgttgtctctcagttcacacgcttcctcactattctggagattccactcagggag
gagggtttcaagtttgtacgtctggacggcactatgagccagaaaaggcgggctcaggtc
attcaggagttccagagcgacgcccctggcagcccattgatcatgctgctgtcactcaaa
gccggaggtgtggggataaacctcagcgctgcatcccgcgtcttcctcatggacccagca
tggaacccagcagcagaggaccagtgtgtggaccggtgtcaccgcctcggccagaagaga
gatgttgtcatcactaagttcatagtgaagggctccgtggaggagaacatggtgaagatt
cagaggcagaagcaggatctggtggagaaggcttttggcaccaagaaccccattgagagg
aagacgtcacgtgttgatgaaatccgagccctgatggagctgtag

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